Experiment set6IT004 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05259 +2.1 16.7 transcriptional regulator, LysR family compare
H281DRAFT_06077 +1.4 8.9 transcriptional regulator, LysR family conserved
H281DRAFT_01462 +1.3 3.7 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_06220 +1.2 1.7 hypothetical protein compare
H281DRAFT_05774 +1.1 5.6 flagellar biosynthetic protein FliR compare
H281DRAFT_02008 +1.1 7.0 phosphocarrier protein compare
H281DRAFT_02577 +1.0 2.1 Sugar phosphate isomerase/epimerase compare
H281DRAFT_04549 +1.0 3.4 Protein of unknown function (DUF3619) compare
H281DRAFT_00074 +0.9 2.9 UDP-galactose 4-epimerase compare
H281DRAFT_03258 +0.9 2.2 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit (EC 4.1.1.68) compare
H281DRAFT_05752 +0.9 6.6 flagellar biosynthetic protein FlhB compare
H281DRAFT_00366 +0.9 2.3 phospholipase C compare
H281DRAFT_01028 +0.8 1.6 peptide/nickel transport system permease protein compare
H281DRAFT_02579 +0.8 1.5 maleylacetate reductase compare
H281DRAFT_05756 +0.8 3.4 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_02732 +0.8 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04544 +0.8 2.2 diacylglycerol kinase (ATP) compare
H281DRAFT_01125 +0.8 2.0 protein of unknown function (DUF2760) compare
H281DRAFT_01727 +0.8 2.6 Short-chain dehydrogenase compare
H281DRAFT_05737 +0.8 2.8 flagellar transcriptional activator FlhD compare
H281DRAFT_04246 +0.8 2.3 glutathione S-transferase compare
H281DRAFT_06296 +0.8 1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05770 +0.8 3.8 flagellar protein FlgJ compare
H281DRAFT_05753 +0.8 4.4 flagellar biosynthesis protein FlhA compare
H281DRAFT_02352 +0.7 4.9 general secretion pathway protein G compare
H281DRAFT_05561 +0.7 4.6 transcriptional regulator, TetR family compare
H281DRAFT_03419 +0.7 1.6 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_00716 +0.7 2.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00687 +0.7 2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_02349 +0.7 3.0 general secretion pathway protein J compare
H281DRAFT_03974 +0.7 2.4 3-oxoacyl-[acyl-carrier-protein] synthase-1 compare
H281DRAFT_05776 +0.7 2.3 flagellar biosynthetic protein FliP compare
H281DRAFT_01689 +0.7 2.7 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05762 +0.7 2.4 flagellar basal-body rod protein FlgB compare
H281DRAFT_00819 +0.7 1.4 competence protein ComEA compare
H281DRAFT_02007 +0.7 6.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_05784 +0.7 3.1 flagellar assembly protein FliH compare
H281DRAFT_06003 +0.7 2.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05763 +0.7 4.9 flagellar basal-body rod protein FlgC compare
H281DRAFT_02350 +0.7 3.4 general secretion pathway protein I compare
H281DRAFT_01914 +0.7 3.4 Predicted PurR-regulated permease PerM compare
H281DRAFT_04391 +0.7 6.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01222 +0.7 1.5 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_00409 +0.7 1.0 bacterioferritin compare
H281DRAFT_00286 +0.7 1.8 transaldolase compare
H281DRAFT_01021 +0.7 2.4 Nitroreductase compare
H281DRAFT_02735 +0.7 2.6 AraC family transcriptional regulator, activator of mtrCDE compare
H281DRAFT_05260 +0.7 3.4 Uncharacterized membrane protein YccC compare
H281DRAFT_02803 +0.7 2.0 thioredoxin 1 compare
H281DRAFT_03399 +0.7 1.9 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05769 +0.7 3.7 flagellar P-ring protein precursor FlgI compare
H281DRAFT_05754 +0.7 3.5 flagellar biosynthesis protein FlhF compare
H281DRAFT_01522 +0.7 1.9 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05765 +0.7 4.9 flagellar hook protein FlgE compare
H281DRAFT_05962 +0.7 1.4 RraA famliy compare
H281DRAFT_03296 +0.7 1.8 hypothetical protein compare
H281DRAFT_05764 +0.6 1.9 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_02354 +0.6 4.2 general secretion pathway protein F compare
H281DRAFT_02356 +0.6 5.9 general secretion pathway protein D compare
H281DRAFT_05225 +0.6 2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_02355 +0.6 4.9 type II secretion system protein E (GspE) compare
H281DRAFT_06197 +0.6 1.8 hypothetical protein compare
H281DRAFT_03351 +0.6 1.1 transcriptional regulator, IclR family compare
H281DRAFT_05767 +0.6 2.0 flagellar basal-body rod protein FlgG compare
H281DRAFT_04941 +0.6 2.3 Uncharacterized conserved protein, Ntn-hydrolase superfamily compare
H281DRAFT_05755 +0.6 2.2 flagellar biosynthesis protein FlhG compare
H281DRAFT_02910 +0.6 1.1 conserved hypothetical protein compare
H281DRAFT_06511 +0.6 1.4 reactive intermediate/imine deaminase compare
H281DRAFT_00966 +0.6 1.3 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_01287 +0.6 1.1 mxaK protein compare
H281DRAFT_03738 +0.6 2.2 hypothetical protein compare
H281DRAFT_06341 +0.6 3.2 glyoxylate/hydroxypyruvate reductase A compare
H281DRAFT_03153 +0.6 2.2 two component transcriptional regulator, LuxR family compare
H281DRAFT_00998 +0.6 2.1 outer membrane protein, multidrug efflux system compare
H281DRAFT_05778 +0.6 1.7 flagellar motor switch protein FliN/FliY compare
H281DRAFT_01612 +0.6 3.7 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_06573 +0.6 2.5 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_05281 +0.6 1.1 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_02556 +0.6 2.1 Outer membrane protein (porin) compare
H281DRAFT_02348 +0.6 4.4 general secretion pathway protein K compare
H281DRAFT_01377 +0.6 1.3 hypothetical protein compare
H281DRAFT_01305 +0.6 3.0 hypothetical protein compare
H281DRAFT_02638 +0.6 2.3 Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) compare
H281DRAFT_06567 +0.6 0.9 hypothetical protein compare
H281DRAFT_06375 +0.6 1.2 hypothetical protein compare
H281DRAFT_03461 +0.6 2.7 Predicted membrane protein compare
H281DRAFT_06070 +0.6 2.3 FimV C-terminal domain-containing protein compare
H281DRAFT_04531 +0.6 2.8 K+-transporting ATPase ATPase C chain compare
H281DRAFT_04877 +0.6 2.9 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_04954 +0.6 2.7 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_03320 +0.6 2.2 Uncharacterized conserved protein compare
H281DRAFT_05075 +0.6 1.8 hypothetical protein compare
H281DRAFT_02262 +0.6 2.5 hypothetical protein compare
H281DRAFT_00282 +0.6 1.9 Protein of unknown function (DUF3311) compare
H281DRAFT_02179 +0.6 4.4 two component transcriptional regulator, LuxR family compare
H281DRAFT_03047 +0.6 1.3 protein of unknown function (DUF4148) compare
H281DRAFT_05097 +0.6 2.8 putative transposase compare
H281DRAFT_05882 +0.6 1.7 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_03824 +0.6 2.3 zinc transporter compare
H281DRAFT_03490 +0.5 1.9 fatty-acyl-CoA synthase compare
H281DRAFT_04896 +0.5 1.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03732 +0.5 1.8 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_04346 +0.5 1.3 uncharacterized protein compare
H281DRAFT_05786 +0.5 3.9 flagellar M-ring protein FliF compare
H281DRAFT_05781 +0.5 2.5 flagellar hook-length control protein FliK compare
H281DRAFT_00523 +0.5 1.7 protease FtsH subunit HflK compare
H281DRAFT_05777 +0.5 3.0 flagellar protein FliO/FliZ compare
H281DRAFT_05013 +0.5 1.7 type III secretion protein D compare
H281DRAFT_05060 +0.5 1.6 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_04433 +0.5 1.8 Undecaprenyl-diphosphatase compare
H281DRAFT_01514 +0.5 1.6 ribose 1,5-bisphosphokinase compare
H281DRAFT_02345 +0.5 3.1 type II secretion system protein N (GspN) compare
H281DRAFT_05785 +0.5 3.9 flagellar motor switch protein FliG compare
H281DRAFT_02948 +0.5 2.0 metabolite-proton symporter compare
H281DRAFT_03389 +0.5 2.0 transcriptional regulator, LysR family compare
H281DRAFT_03377 +0.5 1.9 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_02347 +0.5 4.4 general secretion pathway protein L compare
H281DRAFT_00055 +0.5 2.2 amidase compare
H281DRAFT_03449 +0.5 3.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_02610 +0.5 1.4 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_05775 +0.5 3.4 flagellar biosynthetic protein FliQ compare
H281DRAFT_04755 +0.5 1.3 transcriptional regulator, LysR family compare
H281DRAFT_03159 +0.5 1.0 hypothetical protein compare
H281DRAFT_04714 +0.5 2.2 small conductance mechanosensitive channel compare
H281DRAFT_00152 +0.5 1.0 Protein of unknown function (DUF3460) compare
H281DRAFT_01878 +0.5 1.7 membrane fusion protein, multidrug efflux system compare
H281DRAFT_04905 +0.5 2.4 outer membrane transport energization protein ExbB compare
H281DRAFT_00940 +0.5 1.9 psiF repeat-containing protein compare
H281DRAFT_04390 +0.5 4.3 ATP-binding cassette, subfamily B compare
H281DRAFT_01040 +0.5 2.4 putative flavoprotein involved in K+ transport compare
H281DRAFT_01717 +0.5 0.7 L-alanine-DL-glutamate epimerase compare
H281DRAFT_01207 +0.5 1.8 SPFH domain, Band 7 family protein compare
H281DRAFT_02156 +0.5 2.9 transcriptional regulator, AsnC family compare
H281DRAFT_04359 +0.5 0.7 Glutaredoxin and related proteins compare
H281DRAFT_03820 +0.5 1.0 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_02351 +0.5 3.4 general secretion pathway protein H compare
H281DRAFT_01709 +0.5 1.3 hypothetical protein compare
H281DRAFT_06560 +0.5 1.6 hypothetical protein compare
H281DRAFT_01668 +0.5 1.5 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_05625 +0.5 1.3 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05315 +0.5 0.8 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_00875 +0.5 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02443 +0.5 1.0 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_03678 +0.5 2.1 hypothetical protein compare
H281DRAFT_05779 +0.5 3.1 flagellar motor switch protein FliM compare
H281DRAFT_06564 +0.5 1.7 hypothetical protein compare
H281DRAFT_06334 +0.5 1.3 peptide/nickel transport system permease protein compare
H281DRAFT_01883 +0.5 0.8 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_01182 +0.5 2.1 SnoaL-like domain-containing protein compare
H281DRAFT_00279 +0.5 3.3 chorismate lyase compare
H281DRAFT_03304 +0.5 1.1 amidohydrolase, PncC family compare
H281DRAFT_01628 +0.5 2.7 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_04931 +0.5 1.9 Surfactin synthase thioesterase subunit compare
H281DRAFT_03289 +0.5 1.9 Glycosyltransferase, GT2 family compare
H281DRAFT_05465 +0.5 1.9 hypothetical protein compare
H281DRAFT_00728 +0.5 1.3 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_03293 +0.5 1.7 Ferritin-like metal-binding protein YciE compare
H281DRAFT_04400 +0.5 3.9 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_00664 +0.5 1.6 assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1) compare
H281DRAFT_05768 +0.5 2.1 flagellar L-ring protein precursor FlgH compare
H281DRAFT_03128 +0.5 2.2 oligopeptide transport system permease protein compare
H281DRAFT_03234 +0.5 1.3 chemotaxis protein MotA compare
H281DRAFT_00555 +0.5 2.8 HEAT repeat compare
H281DRAFT_03771 +0.5 1.2 hypothetical protein compare
H281DRAFT_04943 +0.5 2.1 putative flavoprotein involved in K+ transport compare
H281DRAFT_00575 +0.5 1.9 Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family compare
H281DRAFT_01111 +0.5 0.7 transcriptional regulator, DeoR family compare
H281DRAFT_05952 +0.5 0.8 transcriptional regulator, LysR family compare
H281DRAFT_01464 +0.5 2.2 Anti-sigma-K factor RskA compare
H281DRAFT_01546 +0.5 2.5 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_04735 +0.5 0.8 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_02971 +0.5 1.5 Protein of unknown function (DUF3225) compare
H281DRAFT_05476 +0.5 0.7 Short-chain dehydrogenase compare
H281DRAFT_02010 +0.5 3.3 glutathione synthase compare
H281DRAFT_01236 +0.5 2.6 Protein-tyrosine-phosphatase compare
H281DRAFT_03742 +0.5 2.0 Sugar phosphate permease compare
H281DRAFT_05302 +0.5 1.0 FAD/FMN-containing dehydrogenase compare
H281DRAFT_03860 +0.5 1.9 hypothetical protein compare
H281DRAFT_02750 +0.5 1.4 hypothetical protein compare
H281DRAFT_03835 +0.5 1.5 NitT/TauT family transport system permease protein compare
H281DRAFT_01479 +0.4 1.9 Membrane proteins related to metalloendopeptidases compare
H281DRAFT_00281 +0.4 2.1 Spermidine synthase compare
H281DRAFT_03646 +0.4 1.6 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit compare
H281DRAFT_03348 +0.4 1.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_05883 +0.4 1.6 ornithine cyclodeaminase (EC 4.3.1.12) compare
H281DRAFT_02801 +0.4 2.6 MFS transporter, SET family, sugar efflux transporter compare
H281DRAFT_00954 +0.4 2.1 GDPmannose 4,6-dehydratase compare
H281DRAFT_00885 +0.4 2.2 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05174 +0.4 2.8 nitronate monooxygenase compare
H281DRAFT_04051 +0.4 1.2 transcriptional regulator, RpiR family compare
H281DRAFT_02568 +0.4 2.2 Methyl-accepting chemotaxis protein compare
H281DRAFT_00326 +0.4 1.0 pyrroloquinoline quinone biosynthesis protein D compare
H281DRAFT_00503 +0.4 2.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05870 +0.4 2.3 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_01225 +0.4 2.1 L-rhamnose mutarotase compare
H281DRAFT_03985 +0.4 2.2 Beta-ketoacyl synthase, N-terminal domain compare
H281DRAFT_06134 +0.4 1.0 hypothetical protein compare
H281DRAFT_05761 +0.4 2.9 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_02931 +0.4 2.0 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_03480 +0.4 1.8 4-hydroxybenzoate polyprenyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium propionate across organisms