Experiment set6IT004 for Bifidobacterium breve UCC2003

Compare to:

reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

200 most important genes:

  gene name fitness t score description  
BBR_RS11210 -5.6 -18.8 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS12235 -5.1 -2.9 hypothetical protein compare
BBR_RS10625 -4.3 -4.2 FHA domain-containing protein compare
BBR_RS11205 -4.2 -4.7 HPr family phosphocarrier protein compare
BBR_RS10255 -4.0 -4.8 chromosomal replication initiator protein DnaA compare
BBR_RS18955 -3.8 -19.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS13040 -3.7 -2.5 CHAP domain-containing protein compare
BBR_RS11540 -3.5 -4.9 DUF1727 domain-containing protein compare
BBR_RS14210 -3.3 -2.3 hypothetical protein compare
BBR_RS10620 -3.3 -6.7 phosphoprotein phosphatase compare
BBR_RS15080 -3.3 -4.5 chorismate synthase compare
BBR_RS18565 -3.2 -3.0 CHAP domain-containing protein compare
BBR_RS10565 -3.0 -25.3 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS19120 -3.0 -13.1 helicase compare
BBR_RS18700 -2.8 -5.5 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS18745 -2.7 -3.2 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS20465 -2.7 -8.8 chromosome partitioning protein compare
BBR_RS16750 -2.7 -3.6 ParA family protein compare
BBR_RS18695 -2.6 -8.7 PRD domain-containing protein compare
BBR_RS14205 -2.6 -4.3 hypothetical protein compare
BBR_RS14540 -2.6 -5.4 Na+/H+ antiporter NhaA compare
BBR_RS12545 -2.5 -5.5 DUF4012 domain-containing protein compare
BBR_RS16965 -2.5 -1.7 ATP-dependent DNA helicase compare
BBR_RS20480 -2.4 -1.3 membrane protein compare
BBR_RS13805 -2.4 -2.5 hypothetical protein compare
BBR_RS19125 -2.4 -9.8 hypothetical protein compare
BBR_RS17640 -2.3 -3.5 DNA-directed RNA polymerase subunit omega compare
BBR_RS10580 -2.3 -4.3 septation inhibitor protein compare
BBR_RS13035 -2.2 -1.5 ABC transporter permease compare
BBR_RS18735 -2.2 -12.4 hypothetical protein compare
BBR_RS20460 -2.2 -5.6 chromosome partitioning protein ParB compare
BBR_RS13070 -2.2 -1.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS14230 -2.1 -7.0 HAMP domain-containing histidine kinase compare
BBR_RS15085 -2.0 -2.3 3-dehydroquinate synthase compare
BBR_RS15520 -2.0 -3.7 shikimate 5-dehydrogenase compare
BBR_RS19160 -2.0 -2.3 phosphate ABC transporter permease subunit PstC compare
BBR_RS11720 -1.9 -5.6 DUF2469 domain-containing protein compare
BBR_RS14265 -1.9 -5.2 Solute-binding protein of ABC transporter system for metals compare
BBR_RS16675 -1.9 -4.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS19540 -1.9 -1.8 homoserine dehydrogenase compare
BBR_RS12045 -1.9 -5.4 hypothetical protein compare
BBR_RS11590 -1.8 -1.5 30S ribosomal protein S18 compare
BBR_RS13830 -1.8 -1.8 DUF4191 domain-containing protein compare
BBR_RS16425 -1.8 -2.4 DUF3071 domain-containing protein compare
BBR_RS19190 -1.7 -7.2 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS18220 -1.7 -10.9 glycosyltransferase family 2 protein compare
BBR_RS18180 -1.7 -9.0 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS17510 -1.6 -8.3 VWA domain-containing protein compare
BBR_RS14625 -1.6 -8.3 pyrroline-5-carboxylate reductase compare
BBR_RS20135 -1.6 -14.2 alpha-glucosidase compare
BBR_RS18050 -1.5 -3.2 threonylcarbamoyl-AMP synthase compare
BBR_RS13030 -1.5 -1.5 cell division ATP-binding protein FtsE compare
BBR_RS19905 -1.5 -1.5 methionine--tRNA ligase compare
BBR_RS21170 -1.5 -7.3 membrane protein insertion efficiency factor YidD compare
BBR_RS13515 -1.5 -6.6 putative sulfate exporter family transporter compare
BBR_RS10940 -1.5 -9.5 DedA family protein compare
BBR_RS12500 -1.4 -1.4 sugar ABC transporter permease compare
BBR_RS14190 -1.4 -9.1 transcriptional regulator compare
BBR_RS13490 -1.4 -2.1 30S ribosomal protein S7 compare
BBR_RS11510 -1.4 -2.0 signal recognition particle-docking protein FtsY compare
BBR_RS16610 -1.4 -5.3 hypothetical protein compare
BBR_RS13890 -1.4 -9.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
BBR_RS19815 -1.3 -11.3 ABC transporter permease compare
BBR_RS17505 -1.3 -8.9 VWA domain-containing protein compare
BBR_RS17500 -1.3 -6.9 hypothetical protein compare
BBR_RS16940 -1.3 -3.6 hypothetical protein compare
BBR_RS17490 -1.3 -8.9 MoxR family ATPase compare
BBR_RS17495 -1.3 -8.0 DUF58 domain-containing protein compare
BBR_RS15860 -1.2 -1.6 DUF2316 domain-containing protein compare
BBR_RS19535 -1.2 -9.6 homoserine kinase compare
BBR_RS14215 -1.2 -2.5 peptidase compare
BBR_RS16555 -1.2 -1.2 DNA translocase FtsK compare
BBR_RS16605 -1.2 -7.5 hypothetical protein compare
BBR_RS19390 -1.2 -1.8 hypothetical protein compare
BBR_RS20435 -1.2 -0.9 CCA tRNA nucleotidyltransferase compare
BBR_RS19070 -1.2 -1.4 50S ribosomal protein L33 compare
BBR_RS19755 -1.2 -8.2 glycosyl transferase compare
BBR_RS19760 -1.2 -1.2 polysaccharide ABC transporter ATPase compare
BBR_RS18690 -1.2 -5.6 diacylglycerol kinase compare
BBR_RS11675 -1.2 -1.7 hypothetical protein compare
BBR_RS16640 -1.2 -2.4 ABC transporter permease compare
BBR_RS12900 -1.2 -2.8 DeoR/GlpR transcriptional regulator compare
BBR_RS14075 -1.2 -5.9 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS15805 -1.1 -4.9 prolipoprotein diacylglyceryl transferase compare
BBR_RS10720 -1.1 -9.3 PDZ domain-containing protein compare
BBR_RS15070 -1.1 -3.3 endolytic transglycosylase MltG compare
BBR_RS12905 -1.1 -1.8 galactose-1-phosphate uridylyltransferase compare
BBR_RS14330 -1.1 -1.4 glycogen debranching enzyme GlgX compare
BBR_RS11770 -1.1 -3.8 chorismate mutase compare
BBR_RS14070 -1.1 -4.9 threonine synthase compare
BBR_RS19820 -1.1 -9.2 ATP-binding protein of ABC transporter system compare
BBR_RS19450 -1.1 -1.4 GTPase ObgE compare
BBR_RS16635 -1.1 -1.4 ABC transporter ATP-binding protein compare
BBR_RS15090 -1.1 -1.4 type II 3-dehydroquinate dehydratase compare
BBR_RS18635 -1.1 -3.6 PspC domain-containing protein compare
BBR_RS20850 -1.0 -1.3 resolvase compare
BBR_RS13300 -1.0 -1.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS18215 -1.0 -5.3 AI-2E family transporter compare
BBR_RS16950 -1.0 -1.7 hypothetical protein compare
BBR_RS20920 -1.0 -3.6 hypothetical protein compare
BBR_RS18575 -1.0 -3.7 hypothetical protein compare
BBR_RS19445 -1.0 -8.8 glutamate 5-kinase compare
BBR_RS18725 -1.0 -2.3 ribonuclease HI compare
BBR_RS12370 -1.0 -1.1 cell division protein compare
BBR_RS18035 -1.0 -3.1 oligoribonuclease compare
BBR_RS16520 -1.0 -6.6 ribosome-associated translation inhibitor RaiA compare
BBR_RS12295 -1.0 -1.3 RNA-binding protein compare
BBR_RS14475 -1.0 -5.8 formate C-acetyltransferase compare
BBR_RS15055 -1.0 -2.7 hypothetical protein compare
BBR_RS14280 -1.0 -1.9 dephospho-CoA kinase compare
BBR_RS17515 -0.9 -5.6 hypothetical protein compare
BBR_RS18990 -0.9 -2.0 AbrB family transcriptional regulator compare
BBR_RS19465 -0.9 -2.9 ribonuclease E/G compare
BBR_RS13910 -0.9 -1.3 arginine repressor compare
BBR_RS16170 -0.9 -3.0 hypothetical protein compare
BBR_RS16975 -0.9 -3.1 transcriptional repressor NrdR compare
BBR_RS12820 -0.9 -6.6 hypothetical protein compare
BBR_RS14370 -0.9 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16955 -0.9 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS13640 -0.9 -3.5 orotidine-5'-phosphate decarboxylase compare
BBR_RS11175 -0.9 -6.5 penicillin-binding protein compare
BBR_RS16430 -0.9 -1.9 nucleotide pyrophosphatase compare
BBR_RS15425 -0.9 -1.5 aspartate carbamoyltransferase compare
BBR_RS20415 -0.9 -7.5 G5 domain-containing protein compare
BBR_RS13820 -0.8 -1.8 ATP-binding protein compare
BBR_RS13630 -0.8 -3.1 carbamoyl-phosphate synthase small subunit compare
BBR_RS20825 -0.8 -2.1 hypothetical protein compare
BBR_RS15760 -0.8 -3.3 MerR family transcriptional regulator compare
BBR_RS14240 -0.8 -3.9 1,4-alpha-glucan branching protein GlgB compare
BBR_RS19795 -0.8 -7.2 hypothetical protein compare
BBR_RS13720 -0.8 -4.0 hypothetical protein compare
BBR_RS10660 -0.8 -7.3 esterase compare
BBR_RS19165 -0.8 -1.8 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12605 -0.8 -2.6 glycosyltransferase family 2 protein compare
BBR_RS16625 -0.8 -3.1 DUF3710 domain-containing protein compare
BBR_RS10900 -0.8 -1.1 molecular chaperone DnaK compare
BBR_RS10265 -0.8 -5.7 DNA replication and repair protein RecF compare
BBR_RS20720 -0.8 -3.7 DUF4422 domain-containing protein compare
BBR_RS15670 -0.8 -1.9 adenine phosphoribosyltransferase compare
BBR_RS13125 -0.8 -1.3 ABC transporter permease compare
BBR_RS10570 -0.8 -2.4 hypothetical protein compare
BBR_RS17455 -0.8 -5.1 DNA-binding response regulator compare
BBR_RS10665 -0.8 -7.3 DUF2156 domain-containing protein compare
BBR_RS15455 -0.8 -1.4 orotate phosphoribosyltransferase compare
BBR_RS20440 -0.8 -2.8 NUDIX hydrolase compare
BBR_RS12300 -0.8 -3.2 30S ribosomal protein S16 compare
BBR_RS11805 -0.8 -4.0 hypothetical protein compare
BBR_RS10615 -0.8 -3.2 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS20475 -0.7 -6.7 KH domain-containing protein compare
BBR_RS13305 -0.7 -3.2 transcriptional repressor compare
BBR_RS11470 -0.7 -1.1 6-phosphogluconolactonase compare
BBR_RS10755 -0.7 -3.4 adenylosuccinate synthase compare
BBR_RS19435 -0.7 -1.4 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS15050 -0.7 -2.6 DUF948 domain-containing protein compare
BBR_RS20775 -0.7 -1.7 DUF4230 domain-containing protein compare
BBR_RS10835 -0.7 -6.4 DUF3459 domain-containing protein compare
BBR_RS15785 -0.7 -1.8 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS12985 -0.7 -4.3 MFS transporter compare
BBR_RS18045 -0.7 -1.2 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS12590 -0.7 -1.8 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS14480 -0.7 -3.8 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS16620 -0.7 -3.5 DUF3159 domain-containing protein compare
BBR_RS20430 -0.7 -0.8 hypothetical protein compare
BBR_RS20450 -0.6 -5.7 murein biosynthesis integral membrane protein MurJ compare
BBR_RS13635 -0.6 -3.1 carbamoyl-phosphate synthase large subunit compare
BBR_RS16220 -0.6 -0.8 DNA cytosine methyltransferase compare
BBR_RS11135 -0.6 -5.4 dihydrodipicolinate synthase family protein compare
BBR_RS12555 -0.6 -3.7 protein-tyrosine-phosphatase compare
BBR_RS16515 -0.6 -1.4 preprotein translocase subunit SecA compare
BBR_RS12975 -0.6 -4.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19395 -0.6 -1.7 hypothetical protein compare
BBR_RS11180 -0.6 -5.5 phosphatase PAP2 family protein compare
BBR_RS18120 -0.6 -1.5 hypothetical protein compare
BBR_RS19645 -0.6 -3.8 RNA degradosome polyphosphate kinase compare
BBR_RS17290 -0.6 -3.7 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS14700 -0.6 -1.5 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS12980 -0.6 -4.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12610 -0.6 -2.6 capsular polysaccharide biosynthesis protein compare
BBR_RS16615 -0.6 -3.4 class I SAM-dependent RNA methyltransferase compare
BBR_RS19170 -0.6 -4.9 DNA-binding response regulator compare
BBR_RS11240 -0.6 -1.3 GtrA family protein compare
BBR_RS15665 -0.6 -1.4 preprotein translocase subunit YajC compare
BBR_RS19095 -0.6 -4.4 magnesium transporter compare
BBR_RS19750 -0.6 -5.1 LTA synthase family protein compare
BBR_RS16905 -0.6 -2.2 hypothetical protein compare
BBR_RS10905 -0.5 -2.5 nucleotide exchange factor GrpE compare
BBR_RS17555 -0.5 -1.9 ubiquitin-like protein Pup compare
BBR_RS10555 -0.5 -0.7 DUF3073 domain-containing protein compare
BBR_RS12305 -0.5 -3.0 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS15440 -0.5 -1.5 orotidine-5'-phosphate decarboxylase compare
BBR_RS20400 -0.5 -5.0 serine/threonine protein kinase compare
BBR_RS18170 -0.5 -1.2 dihydropteroate synthase compare
BBR_RS16670 -0.5 -3.1 hypothetical protein compare
BBR_RS16985 -0.5 -1.6 transcriptional repressor LexA compare
BBR_RS12770 -0.5 -2.3 hypothetical protein compare
BBR_RS19155 -0.5 -3.1 phosphate ABC transporter, permease protein PstA compare
BBR_RS20195 -0.5 -4.6 ROK family transcriptional regulator compare
BBR_RS18795 -0.5 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS16020 -0.5 -1.6 hypothetical protein compare
BBR_RS20455 -0.5 -3.1 thioredoxin-disulfide reductase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in carbon source experiments

For carbon source Bioecolians-prebiotic across organisms