Experiment set6IT003 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Malonic acid carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_04974 -5.4 -6.2 aromatic-amino-acid transaminase compare
H281DRAFT_05801 -5.3 -6.4 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_04831 -5.2 -3.6 hypothetical protein compare
H281DRAFT_05712 -4.8 -6.2 indole-3-glycerol phosphate synthase compare
H281DRAFT_06067 -4.7 -15.6 tryptophan synthase, beta chain compare
H281DRAFT_00115 -4.5 -3.0 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_00120 -4.5 -5.7 sirohydrochlorin cobaltochelatase compare
H281DRAFT_05279 -4.5 -2.7 malonate decarboxylase beta subunit compare
H281DRAFT_02065 -4.4 -4.3 rfaE bifunctional protein, domain II compare
H281DRAFT_06065 -4.2 -7.1 tryptophan synthase, alpha chain compare
H281DRAFT_00116 -4.1 -2.5 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_04835 -4.1 -2.8 hypothetical protein compare
H281DRAFT_02926 -4.1 -12.0 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_00909 -4.1 -5.2 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_06060 -4.0 -6.9 amidophosphoribosyltransferase compare
H281DRAFT_04120 -3.9 -7.5 argininosuccinate synthase compare
H281DRAFT_02004 -3.9 -5.7 phosphoglycerate mutase compare
H281DRAFT_04119 -3.9 -6.0 ornithine carbamoyltransferase compare
H281DRAFT_05714 -3.8 -3.8 anthranilate synthase, component II compare
H281DRAFT_02214 -3.7 -14.0 homoserine O-acetyltransferase compare
H281DRAFT_06072 -3.6 -7.3 3-isopropylmalate dehydrogenase compare
H281DRAFT_05713 -3.6 -7.1 anthranilate phosphoribosyltransferase compare
H281DRAFT_04610 -3.6 -14.8 Fe-S oxidoreductase compare
H281DRAFT_05620 -3.5 -16.7 glutamate synthase (NADH) large subunit compare
H281DRAFT_04679 -3.5 -5.0 pyrroline-5-carboxylate reductase compare
H281DRAFT_05281 -3.5 -2.1 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_04953 -3.4 -12.3 acetyl-coenzyme A synthetase compare
H281DRAFT_03925 -3.3 -9.9 chorismate mutase compare
H281DRAFT_00471 -3.3 -10.2 transcriptional regulator, IclR family compare
H281DRAFT_06059 -3.3 -9.3 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_00118 -3.3 -6.1 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_05715 -3.3 -16.6 anthranilate synthase, component I compare
H281DRAFT_06264 -3.3 -4.2 glutamate 5-kinase compare
H281DRAFT_04553 -3.2 -4.8 ketol-acid reductoisomerase compare
H281DRAFT_02000 -3.2 -7.3 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_00114 -3.2 -4.4 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_03926 -3.1 -10.5 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_04082 -3.1 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_00117 -3.1 -6.5 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_06068 -3.0 -6.7 phosphoribosylanthranilate isomerase compare
H281DRAFT_04710 -3.0 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00580 -2.9 -8.7 isocitrate lyase compare
H281DRAFT_06075 -2.8 -5.6 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_04826 -2.8 -3.9 rhamnosyltransferase compare
H281DRAFT_05621 -2.8 -4.1 glutamate synthase (NADH) small subunit compare
H281DRAFT_06315 -2.7 -2.2 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_04201 -2.6 -3.0 O-antigen ligase compare
H281DRAFT_04721 -2.6 -2.6 Cell division and transport-associated protein TolR compare
H281DRAFT_05282 -2.5 -8.5 malonate decarboxylase alpha subunit conserved
H281DRAFT_00194 -2.4 -2.4 argininosuccinate lyase compare
H281DRAFT_02215 -2.4 -4.3 methionine biosynthesis protein MetW compare
H281DRAFT_00860 -2.4 -3.0 phosphoserine phosphatase compare
H281DRAFT_02137 -2.3 -4.7 type I restriction enzyme M protein compare
H281DRAFT_00627 -2.2 -7.6 phosphoenolpyruvate synthase compare
H281DRAFT_06073 -2.2 -5.3 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_04848 -2.1 -2.3 hypothetical protein compare
H281DRAFT_04844 -2.1 -10.2 Glycosyltransferase, GT2 family compare
H281DRAFT_06272 -2.1 -1.7 uncharacterized protein compare
H281DRAFT_02205 -2.0 -2.5 transcriptional regulator, TraR/DksA family compare
H281DRAFT_00113 -2.0 -4.3 transcriptional regulator, LysR family compare
H281DRAFT_00395 -2.0 -5.5 hydroxymethylpyrimidine synthase compare
H281DRAFT_02036 -1.9 -6.7 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_05278 -1.9 -6.4 malonate decarboxylase gamma subunit conserved
H281DRAFT_05276 -1.9 -6.9 malonate decarboxylase epsilon subunit conserved
H281DRAFT_04850 -1.8 -2.5 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_05351 -1.8 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00317 -1.8 -4.6 O-antigen ligase compare
H281DRAFT_00529 -1.8 -3.7 KUP system potassium uptake protein compare
H281DRAFT_01889 -1.8 -3.6 7-cyano-7-deazaguanine reductase compare
H281DRAFT_04851 -1.7 -4.1 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_00608 -1.7 -7.2 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_04210 -1.7 -10.9 two-component system, OmpR family, sensor histidine kinase TctE compare
H281DRAFT_01993 -1.7 -7.9 cytochrome c oxidase subunit 1 compare
H281DRAFT_00315 -1.7 -4.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01986 -1.7 -6.4 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_01002 -1.6 -2.0 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04209 -1.6 -8.6 two component transcriptional regulator, winged helix family compare
H281DRAFT_04687 -1.5 -8.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_04951 -1.5 -8.3 cation/acetate symporter compare
H281DRAFT_04707 -1.5 -5.5 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_01985 -1.5 -7.2 protoheme IX farnesyltransferase compare
H281DRAFT_03909 -1.5 -7.5 Acetoin utilization deacetylase AcuC compare
H281DRAFT_06546 -1.4 -3.7 hypothetical protein compare
H281DRAFT_05815 -1.4 -5.1 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_05618 -1.4 -8.6 outer membrane protein compare
H281DRAFT_05717 -1.4 -5.3 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_05283 -1.4 -5.1 transcriptional regulator, GntR family compare
H281DRAFT_04849 -1.3 -1.2 UDP-glucose 4-epimerase compare
H281DRAFT_01322 -1.3 -1.6 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_04719 -1.3 -4.0 TolB protein compare
H281DRAFT_06286 -1.3 -3.4 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00576 -1.3 -7.4 malate synthase compare
H281DRAFT_04356 -1.3 -1.5 anti sigma-E protein, RseA compare
H281DRAFT_01990 -1.3 -6.8 cytochrome c oxidase subunit 3 compare
H281DRAFT_00316 -1.3 -5.7 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_02136 -1.2 -1.8 hypothetical protein compare
H281DRAFT_06163 -1.2 -1.3 hypothetical protein compare
H281DRAFT_00290 -1.2 -2.3 Cytochrome c553 compare
H281DRAFT_06127 -1.2 -2.9 hypothetical protein compare
H281DRAFT_01749 -1.2 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_06562 -1.2 -1.5 hypothetical protein compare
H281DRAFT_03781 -1.2 -1.7 Parvulin-like peptidyl-prolyl isomerase compare
H281DRAFT_00465 -1.2 -3.2 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_06480 -1.2 -1.7 arginine succinyltransferase compare
H281DRAFT_06168 -1.1 -1.9 hypothetical protein compare
H281DRAFT_03006 -1.1 -4.4 transcriptional regulator, GntR family compare
H281DRAFT_04952 -1.1 -2.7 putative solute:sodium symporter small subunit compare
H281DRAFT_06498 -1.1 -1.8 Regulator of RNase E activity RraA compare
H281DRAFT_01222 -1.1 -1.5 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_04195 -1.1 -1.4 heptosyltransferase-2 compare
H281DRAFT_04087 -1.1 -1.4 hypothetical protein compare
H281DRAFT_04419 -1.1 -4.5 Ppx/GppA phosphatase compare
H281DRAFT_02201 -1.1 -2.0 hypothetical protein compare
H281DRAFT_01994 -1.0 -6.6 cytochrome c oxidase subunit 2 compare
H281DRAFT_01614 -1.0 -1.5 hypothetical protein compare
H281DRAFT_02855 -1.0 -2.2 carbonic anhydrase compare
H281DRAFT_00933 -1.0 -4.1 hypothetical protein compare
H281DRAFT_05087 -1.0 -1.7 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_01018 -1.0 -2.0 transcriptional regulator, AraC family compare
H281DRAFT_05134 -1.0 -2.9 transcriptional regulator, TetR family compare
H281DRAFT_05601 -1.0 -1.5 hypothetical protein compare
H281DRAFT_00152 -1.0 -1.2 Protein of unknown function (DUF3460) compare
H281DRAFT_03775 -0.9 -1.8 protein of unknown function (DUF4399) compare
H281DRAFT_02581 -0.9 -1.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_01144 -0.9 -1.7 transcriptional regulator, LysR family compare
H281DRAFT_05827 -0.9 -1.6 hypothetical protein compare
H281DRAFT_04220 -0.9 -4.5 Cytochrome c, mono- and diheme variants compare
H281DRAFT_03159 -0.9 -1.2 hypothetical protein compare
H281DRAFT_05183 -0.9 -1.4 putrescine transport system permease protein compare
H281DRAFT_06037 -0.9 -1.8 molybdate transport system substrate-binding protein compare
H281DRAFT_02369 -0.9 -1.6 Protein of unknown function (DUF3717) compare
H281DRAFT_01075 -0.9 -2.6 benzoate 1,2-dioxygenase, alpha subunit compare
H281DRAFT_05297 -0.9 -1.5 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_06273 -0.9 -1.3 AmpD protein compare
H281DRAFT_02114 -0.9 -2.3 solute carrier family 10 (sodium/bile acid cotransporter), member 7 compare
H281DRAFT_06347 -0.9 -1.4 hypothetical protein compare
H281DRAFT_01239 -0.9 -1.5 hypothetical protein compare
H281DRAFT_03873 -0.9 -2.0 protein of unknown function (DUF4148) compare
H281DRAFT_05494 -0.9 -1.0 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_05445 -0.9 -1.6 protein of unknown function (DUF4440) compare
H281DRAFT_06031 -0.9 -3.2 transcriptional regulator, MarR family compare
H281DRAFT_03252 -0.9 -2.1 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-) compare
H281DRAFT_04075 -0.8 -3.5 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_06074 -0.8 -1.2 entericidin A compare
H281DRAFT_04219 -0.8 -3.8 Cytochrome c553 compare
H281DRAFT_03221 -0.8 -1.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01289 -0.8 -1.1 mxaA protein compare
H281DRAFT_00046 -0.8 -1.5 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_05092 -0.8 -2.3 hypothetical protein compare
H281DRAFT_05086 -0.8 -1.1 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_03751 -0.8 -1.3 transcriptional regulator, IclR family compare
H281DRAFT_03585 -0.8 -1.2 Polyisoprenoid-binding protein YceI compare
H281DRAFT_04302 -0.8 -2.0 molybdopterin adenylyltransferase compare
H281DRAFT_03588 -0.8 -3.2 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_00886 -0.8 -2.7 two component transcriptional regulator, winged helix family compare
H281DRAFT_05116 -0.8 -3.1 cell division protein ZapE compare
H281DRAFT_00842 -0.8 -4.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_02411 -0.8 -2.8 aminomethyltransferase compare
H281DRAFT_00235 -0.8 -2.1 hypothetical protein compare
H281DRAFT_00091 -0.8 -1.9 urea transport system ATP-binding protein compare
H281DRAFT_04071 -0.8 -4.2 quinolinate synthetase compare
H281DRAFT_00601 -0.8 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06044 -0.8 -2.8 Protein of unknown function (DUF2384) compare
H281DRAFT_05469 -0.7 -2.2 transcriptional regulator, IclR family compare
H281DRAFT_01053 -0.7 -1.4 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_04552 -0.7 -1.7 acetolactate synthase, small subunit compare
H281DRAFT_02410 -0.7 -3.3 glycine cleavage system H protein compare
H281DRAFT_00408 -0.7 -2.2 Protein of unknown function (DUF1328) compare
H281DRAFT_03497 -0.7 -2.0 transcriptional regulator, DeoR family compare
H281DRAFT_04070 -0.7 -3.7 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_04362 -0.7 -1.3 RNAse III (EC 3.1.26.3) compare
H281DRAFT_06509 -0.7 -1.4 hypothetical protein compare
H281DRAFT_01684 -0.7 -2.1 transcriptional regulator, TetR family compare
H281DRAFT_03702 -0.7 -1.8 transcriptional regulator, MarR family compare
H281DRAFT_03931 -0.7 -2.7 phosphoglycolate phosphatase compare
H281DRAFT_06514 -0.7 -2.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01412 -0.7 -1.3 Superinfection immunity protein compare
H281DRAFT_03154 -0.7 -1.3 two-component system, NarL family, sensor kinase compare
H281DRAFT_02170 -0.7 -1.4 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_05214 -0.7 -1.1 transcriptional regulator, LacI family compare
H281DRAFT_00579 -0.7 -2.8 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_05986 -0.7 -2.0 transcriptional regulator, TetR family compare
H281DRAFT_01587 -0.7 -2.0 amino acid/amide ABC transporter membrane protein 1, HAAT family /amino acid/amide ABC transporter membrane protein 2, HAAT family compare
H281DRAFT_04148 -0.7 -1.1 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_03069 -0.7 -1.0 Uncharacterized conserved protein compare
H281DRAFT_02425 -0.7 -4.6 NAD-dependent aldehyde dehydrogenases compare
H281DRAFT_06573 -0.7 -1.6 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_03749 -0.7 -1.1 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_00855 -0.7 -1.6 SSU ribosomal protein S12P methylthiotransferase compare
H281DRAFT_01878 -0.7 -2.4 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01224 -0.6 -1.1 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_03138 -0.6 -3.2 Outer membrane protein (porin) compare
H281DRAFT_02183 -0.6 -1.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_04172 -0.6 -1.6 transcriptional regulator, TetR family compare
H281DRAFT_06170 -0.6 -1.3 hypothetical protein compare
H281DRAFT_03632 -0.6 -3.6 transcriptional regulator, IclR family compare
H281DRAFT_01450 -0.6 -2.9 transcriptional regulator, LacI family compare
H281DRAFT_05855 -0.6 -1.5 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
H281DRAFT_00140 -0.6 -3.0 cobalamin-5'-phosphate synthase compare
H281DRAFT_04635 -0.6 -0.6 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Malonic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Malonic acid across organisms