Experiment set6H9 for Shewanella oneidensis MR-1

Compare to:

LB with Cholin acetate 20 mM

200 most detrimental genes:

  gene name fitness t score description  
SO1703 +1.2 3.5 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3229 fliE +0.8 2.5 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SOA0014 +0.8 3.3 hypothetical protein (NCBI ptt file) compare
SO3648 +0.8 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2159 +0.8 2.1 TonB domain protein (NCBI ptt file) compare
SO0208.1 +0.8 1.9 putative transposase (NCBI ptt file) compare
SO2991 +0.7 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO0701 +0.7 4.3 transcriptional regulator, LysR family (NCBI ptt file) compare
SO3219 fliO +0.7 1.4 flagellar protein FliO (NCBI ptt file) compare
SO3085 +0.7 2.7 conserved domain protein (NCBI ptt file) compare
SO4566 +0.7 0.7 hypothetical protein (NCBI ptt file) compare
SO0290 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
SO2829 +0.7 0.7 conserved domain protein (NCBI ptt file) compare
SO4209 +0.6 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO2753.2 +0.6 2.9 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO2830 +0.6 2.7 hypothetical protein (NCBI ptt file) compare
SO3105 pspE-1 +0.6 1.2 phage shock protein E (NCBI ptt file) compare
SO1817 +0.6 2.0 primosomal replication protein n'', putative (NCBI ptt file) compare
SO2381 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
SO3831 +0.6 3.1 acetyltransferase, GNAT family (NCBI ptt file) compare
SO0844 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO1050 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
SO2298 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
SO3887 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2656 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
SO2888 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
SO1886 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
SO2727 +0.5 1.4 cytochrome c3 (NCBI ptt file) compare
SO2999 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
SO3723 cysC +0.5 1.6 adenylylsulfate kinase (NCBI ptt file) compare
SO3819.3 +0.5 1.9 hypothetical ammonia permease (NCBI ptt file) compare
SO_2754 +0.5 1.8 no description compare
SO1295 +0.5 2.0 major outer membrane lipoprotein, putative (NCBI ptt file) compare
SO2584 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
SO2634 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO_3457 +0.5 4.4 hybrid sensory histidine kinase BarA (RefSeq) compare
SO3470 +0.5 1.2 conserved hypothetical protein TIGR00244 (NCBI ptt file) compare
SOA0171 +0.5 2.6 hypothetical protein (NCBI ptt file) compare
SO3033 +0.5 1.8 ferric alcaligin siderophore receptor (NCBI ptt file) compare
SO1832 ppiC-2 +0.5 1.4 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) compare
SO3169 +0.5 0.7 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SOA0130 +0.5 0.8 ISSod4, transposase (NCBI ptt file) compare
SO2291 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO1549 xni +0.5 1.6 exodeoxyribonuclease IX (NCBI ptt file) compare
SO1112 bfr1 +0.5 1.4 bacterioferritin subunit 1 (NCBI ptt file) compare
SO2514 nth +0.5 1.8 endonuclease III (NCBI ptt file) compare
SO4689 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO0428 +0.5 4.2 conserved hypothetical protein (NCBI ptt file) compare
SO3900 +0.5 1.8 yqiA-like hydrolase, affects the cell envelope (from data) compare
SO2203 dgkA +0.5 1.1 diacylglycerol kinase (NCBI ptt file) compare
SO0972 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO1860 +0.4 2.6 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2219 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO1277 +0.4 1.9 proton-dependent oligopeptide transporter (POT) family protein (NCBI ptt file) compare
SO1570 +0.4 3.6 GGDEF domain protein (NCBI ptt file) compare
SO2319 +0.4 0.8 anti-anti-sigma factor, putative (NCBI ptt file) compare
SO2988 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO0637 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO3112 yajC +0.4 1.0 preprotein translocase, YajC subunit (NCBI ptt file) compare
SO2736 +0.4 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO2614 +0.4 1.4 conserved hypothetical protein TIGR00247 (NCBI ptt file) compare
SO4058 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO0298 gmhA +0.4 1.9 phosphoheptose isomerase (NCBI ptt file) compare
SO0448 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO2838 +0.4 0.4 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO4687 ugd +0.4 3.3 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO4481 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO2423 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO2311 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO1166 +0.4 1.6 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO2470 +0.4 0.4 conserved hypothetical protein (NCBI ptt file) compare
SO2983 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO1662 +0.4 1.7 hypothetical Ccm2-related protein (NCBI ptt file) compare
SO0883 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO2841 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO1224 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3215 flhB +0.4 2.6 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SOA0004 +0.4 2.8 type II DNA modification methyltransferase (NCBI ptt file) compare
SO2281 +0.4 2.0 alkaline phosphatase (NCBI ptt file) compare
SO0142 ribB +0.4 2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase (NCBI ptt file) compare
SO4188 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO1400 +0.4 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO0527 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO0881 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2179 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO1848 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO2417 +0.4 1.5 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO2426 +0.4 1.4 DNA-binding response regulator (NCBI ptt file) compare
SO2703 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO4250 dut +0.4 2.3 deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI ptt file) compare
SO4686 +0.4 2.5 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO2253 +0.4 1.8 acylphosphatase (NCBI ptt file) compare
SO2290 +0.4 1.7 rhodanese domain protein (NCBI ptt file) compare
SO1182 +0.4 0.8 hypothetical protein (NCBI ptt file) compare
SO2263 +0.4 1.1 Rrf2 family protein (NCBI ptt file) compare
SO2833 nrdG +0.4 1.9 anaerobic ribonucleoside-triphosphate reductase activating protein (NCBI ptt file) compare
SO2809 +0.4 1.1 RepA domain protein (NCBI ptt file) compare
SO4126 +0.4 0.8 hypothetical protein (NCBI ptt file) compare
SO3239.2 +0.4 1.5 hypothetical flagellar protein (NCBI ptt file) compare
SO_0589 +0.4 1.4 no description compare
SO3677 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO2722 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
SOA0005 +0.4 2.6 hypothetical protein (NCBI ptt file) compare
SO2797 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0340 ilvE +0.4 1.7 branched-chain amino acid aminotransferase (NCBI ptt file) compare
SOA0172 +0.4 2.2 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO_A0007 +0.4 2.5 hypothetical protein (NCBI) compare
SO4409 +0.4 0.8 hypothetical protein (NCBI ptt file) compare
SO_3240 +0.4 1.5 no description compare
SO2914 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2201 +0.3 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2673 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO1535 +0.3 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO0558 smtA +0.3 2.1 smtA protein (NCBI ptt file) compare
SO3064 purF +0.3 1.4 amidophosphoribosyltransferase (NCBI ptt file) compare
SO0981 +0.3 2.1 sensor histidine kinase (NCBI ptt file) compare
SO2989 +0.3 1.1 prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO2424 +0.3 1.7 zinc carboxypeptidase domain protein (NCBI ptt file) compare
SO1503 +0.3 1.5 ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) compare
SO1866 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO2037 +0.3 1.9 site-specific recombinase, phage integrase family (NCBI ptt file) compare
SO3242 flgI +0.3 2.2 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO3217 fliQ +0.3 1.2 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO3261 +0.3 2.3 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO1537 +0.3 1.1 hypothetical protein (NCBI ptt file) compare
SO1123 +0.3 1.1 hypothetical protein (NCBI ptt file) compare
SO1843 +0.3 1.1 hypothetical protein (NCBI ptt file) compare
SO3895 +0.3 1.5 HesA/MoeB/ThiF family protein (NCBI ptt file) compare
SO4185 +0.3 0.6 hypothetical protein (NCBI ptt file) compare
SO1434.2 +0.3 1.6 hypothetical integrase (NCBI ptt file) compare
SO0417 +0.3 1.8 pilin, putative (NCBI ptt file) compare
SOA0121 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO2193 +0.3 1.1 DNA-binding response regulator (NCBI ptt file) compare
SO0464 +0.3 1.1 MutT/nudix family protein (NCBI ptt file) compare
SO3226 fliH +0.3 1.9 flagellar assembly protein FliH (NCBI ptt file) compare
SO2762 +0.3 1.1 nagD protein (NCBI ptt file) compare
SO0924 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO0734 +0.3 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2595 +0.3 1.4 BNR repeat protein (NCBI ptt file) compare
SO_2818 +0.3 1.7 no description compare
SO1691 blc +0.3 0.9 lipoprotein Blc (NCBI ptt file) compare
SO3057 +0.3 2.1 Pal/histidase family protein (NCBI ptt file) compare
SO1775 +0.3 1.8 phage SPO1 DNA polymerase domain protein (NCBI ptt file) compare
SO2113 +0.3 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO3097.2 +0.3 1.3 hypothetical sodium/proline symporter (NCBI ptt file) compare
SOA0011 +0.3 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2398 pyrF +0.3 1.3 orotidine 5`-phosphate decarboxylase (NCBI ptt file) compare
SO4688 +0.3 2.4 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO0955 +0.3 1.3 hypothetical protein (NCBI ptt file) compare
SO1303 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO1707 +0.3 2.1 ABC transporter, permease protein, putative (NCBI ptt file) compare
SO4641 +0.3 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO4251 +0.3 1.4 transcriptional regulator, TetR family (NCBI ptt file) compare
SO4562 +0.3 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO1963 +0.3 1.8 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
SO4320 aggA +0.3 1.9 agglutination protein (NCBI ptt file) compare
SO3741 pntB +0.3 1.7 NAD(P) transhydrogenase, beta subunit (NCBI ptt file) compare
SO2497 +0.3 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO1846 +0.3 1.5 hypothetical protein (NCBI ptt file) compare
SO4228 +0.3 0.6 conserved hypothetical protein TIGR00242 (NCBI ptt file) compare
SO1733 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO3987 +0.3 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3258 +0.3 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO3708 +0.3 0.7 membrane protein, putative (NCBI ptt file) compare
SO3192 +0.3 0.6 conserved hypothetical protein (NCBI ptt file) compare
SO1529 pomA +0.3 1.1 chemotaxis motA protein (NCBI ptt file) compare
SO3244 flgG +0.3 2.0 flagellar basal-body rod protein FlgG (NCBI ptt file) compare
SO3936 motX +0.3 1.7 sodium-type flagellar protein MotX (NCBI ptt file) compare
SO0766.1 +0.3 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2189 +0.3 1.8 hypothetical heat shock protein (NCBI ptt file) compare
SO0187 +0.3 1.9 serine protease, subtilase family (NCBI ptt file) compare
SO0258.1 +0.3 1.0 putative transposase (NCBI ptt file) compare
SOA0077 +0.3 2.1 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO2498 +0.3 2.2 sensory box protein (NCBI ptt file) compare
SO4484 +0.3 0.7 cytochrome c-type protein Shp (NCBI ptt file) compare
SO2455 +0.3 1.4 transcriptional regulator, LysR family (NCBI ptt file) compare
SO2623 aat +0.3 1.1 leucyl/phenylalanyl-tRNA--protein transferase (NCBI ptt file) compare
SO3255 flgN +0.3 1.2 flagellar biosynthetic protein FlgN (NCBI ptt file) compare
SO3191 +0.3 1.6 chain length determinant protein (NCBI ptt file) compare
SO3056 +0.3 1.4 tetraheme cytochrome c (NCBI ptt file) compare
SOA0003 +0.3 2.7 type II restriction endonuclease, putative (NCBI ptt file) compare
SO2565 +0.3 1.4 intracellular proteinase inhibitor domain protein (NCBI ptt file) compare
SO3210 fliA +0.3 1.5 RNA polymerase sigma-27 factor (NCBI ptt file) compare
SO_3141 +0.3 0.6 no description compare
SO2773 +0.3 0.7 hypothetical protein (NCBI ptt file) compare
SO1728 +0.3 1.0 hypothetical protein (NCBI ptt file) compare
SO2987 +0.3 1.3 hypothetical protein (NCBI ptt file) compare
SO3740 pntA +0.3 1.5 NAD(P) transhydrogenase, alpha subunit (NCBI ptt file) compare
SO2984 +0.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2500 +0.3 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO4011 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO1142 carB +0.3 2.2 carbamoyl-phosphate synthase, large subunit (NCBI ptt file) compare
SO3449.1 +0.3 1.7 hypothetical protein (NCBI ptt file) compare
SO2846 +0.3 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO4402 +0.3 0.8 hypothetical protein (NCBI ptt file) compare
SO2980 +0.3 1.5 hypothetical protein (NCBI ptt file) compare
SO2947 +0.3 0.9 hypothetical protein (NCBI ptt file) compare
SO3223 fliK +0.3 1.9 flagellar hook-length control protein FliK (NCBI ptt file) compare
SOA0059 +0.3 0.4 conserved hypothetical protein (NCBI ptt file) compare
SO3270 +0.3 1.1 polysaccharide biosynthesis protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in stress experiments

For stress Cholin acetate across organisms