Experiment set6H41 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Sodium Chlorate 40 mM

200 most important genes:

  gene name fitness t score description  
Psest_2088 -5.5 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0953 -4.9 -11.9 iron-sulfur cluster-binding protein compare
Psest_0508 -4.8 -4.6 gamma-glutamyl phosphate reductase compare
Psest_3226 -4.3 -1.8 Predicted membrane protein compare
Psest_4085 -4.2 -12.2 Biotin carboxylase compare
Psest_0279 -4.2 -4.1 methionine biosynthesis protein MetW compare
Psest_2584 -4.2 -6.9 Phosphoribosylanthranilate isomerase compare
Psest_0153 -4.1 -9.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2000 -4.1 -7.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3648 -4.1 -7.3 anthranilate phosphoribosyltransferase compare
Psest_3649 -4.1 -6.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0954 -4.0 -9.3 Fe-S oxidoreductase compare
Psest_3647 -4.0 -6.6 Indole-3-glycerol phosphate synthase compare
Psest_3650 -4.0 -10.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1640 -3.9 -11.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0325 -3.9 -15.5 Putative threonine efflux protein compare
Psest_4274 -3.9 -2.7 hypothetical protein compare
Psest_0152 -3.8 -4.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_3031 -3.8 -1.6 hypothetical protein compare
Psest_0952 -3.8 -4.5 Uncharacterized conserved protein compare
Psest_0155 -3.8 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3866 -3.7 -12.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3384 -3.7 -7.0 glutamate 5-kinase compare
Psest_0280 -3.6 -12.0 homoserine O-acetyltransferase compare
Psest_2579 -3.6 -6.9 amidophosphoribosyltransferase compare
Psest_3864 -3.6 -10.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4084 -3.5 -12.8 oxaloacetate decarboxylase alpha subunit compare
Psest_2527 -3.5 -7.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1509 -3.5 -10.1 quinolinate synthetase complex, A subunit compare
Psest_3298 -3.5 -8.5 histidinol dehydrogenase compare
Psest_2531 -3.5 -16.0 cytochrome c oxidase accessory protein FixG compare
Psest_2578 -3.4 -13.0 O-succinylhomoserine sulfhydrylase compare
Psest_2590 -3.4 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_2229 -3.4 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_2532 -3.4 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_0413 -3.4 -6.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3299 -3.4 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1473 -3.3 -9.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0687 -3.3 -8.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -3.2 -12.7 3-isopropylmalate dehydrogenase compare
Psest_1496 -3.2 -3.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_1238 -3.2 -8.9 Predicted membrane protein/domain compare
Psest_2591 -3.2 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psest_4086 -3.2 -9.9 Transcriptional regulator compare
Psest_0414 -3.0 -4.6 biotin biosynthesis protein BioC compare
Psest_0411 -3.0 -8.8 biotin synthetase compare
Psest_3944 -3.0 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1280 -3.0 -15.2 TonB-dependent copper receptor compare
Psest_3456 -2.9 -2.0 RNA polymerase sigma factor, sigma-70 family compare
Psest_0062 -2.9 -7.7 tryptophan synthase, alpha subunit compare
Psest_2708 -2.9 -11.4 transaldolase compare
Psest_1082 -2.9 -1.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2316 -2.9 -15.5 phosphoenolpyruvate synthase compare
Psest_4335 -2.9 -2.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1656 -2.8 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0718 -2.8 -4.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_3030 -2.8 -8.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1655 -2.7 -4.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0306 -2.7 -14.6 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2090 -2.7 -4.3 Protein of unknown function (DUF2970). compare
Psest_3732 -2.7 -8.0 polyphosphate kinase 1 compare
Psest_1661 -2.7 -2.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0063 -2.7 -3.7 tryptophan synthase, beta subunit compare
Psest_2530 -2.7 -5.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0722 -2.7 -6.1 Predicted ATPase compare
Psest_2565 -2.6 -2.5 Transcriptional regulator compare
Psest_0412 -2.6 -8.6 8-amino-7-oxononanoate synthase compare
Psest_1484 -2.6 -13.2 Thiol-disulfide isomerase and thioredoxins compare
Psest_1452 -2.5 -4.2 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3790 -2.5 -2.9 Cytochrome c5 compare
Psest_3988 -2.5 -7.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2331 -2.5 -11.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0719 -2.5 -7.7 Uncharacterized protein conserved in bacteria compare
Psest_1037 -2.5 -2.8 acetolactate synthase, small subunit compare
Psest_0415 -2.5 -4.9 dethiobiotin synthase compare
Psest_1295 -2.5 -7.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3123 -2.4 -3.7 dihydroorotase, homodimeric type compare
Psest_3159 -2.4 -8.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1013 -2.4 -2.8 phosphoribosylamine--glycine ligase compare
Psest_3862 -2.4 -11.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0958 -2.4 -9.7 Oligoketide cyclase/lipid transport protein compare
Psest_1474 -2.3 -3.9 phosphoribosylaminoimidazole synthetase compare
Psest_3100 -2.3 -6.6 RNA polymerase sigma factor RpoE compare
Psest_1772 -2.3 -5.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3047 -2.3 -1.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2027 -2.2 -10.9 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_0326 -2.2 -9.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1659 -2.2 -3.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1660 -2.2 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1920 -2.2 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1725 -2.2 -11.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0186 -2.1 -2.5 Protein-disulfide isomerase compare
Psest_0191 -2.1 -1.2 PAS domain S-box compare
Psest_1657 -2.1 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3338 -2.1 -2.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2525 -2.1 -3.3 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1958 -2.1 -4.3 Glutaredoxin-like domain (DUF836). compare
Psest_1022 -2.1 -5.1 Thiol:disulfide interchange protein compare
Psest_3943 -2.0 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0313 -2.0 -2.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3202 -2.0 -4.9 Flavodoxins compare
Psest_3963 -2.0 -9.8 PAS domain S-box compare
Psest_0192 -1.9 -6.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2862 -1.9 -8.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0697 -1.9 -4.7 ribosomal protein L9 compare
Psest_0511 -1.9 -2.5 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1804 -1.9 -1.8 Superfamily II DNA and RNA helicases compare
Psest_1322 -1.8 -2.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1947 -1.8 -1.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0477 -1.7 -9.9 thiamine biosynthesis protein ThiC compare
Psest_3908 -1.7 -1.2 Cytochrome c553 compare
Psest_0951 -1.7 -9.6 FAD/FMN-containing dehydrogenases compare
Psest_0067 -1.7 -2.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_2561 -1.7 -1.6 hypothetical protein compare
Psest_3297 -1.6 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4209 -1.6 -2.1 Uncharacterized conserved small protein compare
Psest_2714 -1.6 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_3721 -1.6 -5.8 Malic enzyme compare
Psest_0266 -1.6 -5.6 thiamine biosynthesis protein ThiS compare
Psest_2329 -1.5 -10.9 Transcriptional regulator compare
Psest_0516 -1.5 -8.5 D-alanyl-D-alanine carboxypeptidase compare
Psest_4406 -1.5 -1.7 hypothetical protein compare
Psest_2880 -1.5 -6.0 Glycosyltransferase compare
Psest_0174 -1.5 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_0489 -1.5 -1.7 phosphoserine phosphatase SerB compare
Psest_2526 -1.5 -4.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3322 -1.5 -11.1 TIGR02099 family protein compare
Psest_3377 -1.5 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3296 -1.5 -2.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4298 -1.5 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2864 -1.5 -2.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1235 -1.5 -6.5 Leucyl aminopeptidase compare
Psest_3810 -1.5 -1.7 orotate phosphoribosyltransferase compare
Psest_3843 -1.5 -6.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0538 -1.4 -12.2 Signal transduction histidine kinase compare
Psest_3565 -1.4 -1.6 hypothetical protein compare
Psest_1527 -1.4 -7.1 Na+/proline symporter compare
Psest_0021 -1.4 -3.1 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_0267 -1.4 -7.5 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_3745 -1.4 -2.1 Uncharacterized enzyme of heme biosynthesis compare
Psest_1801 -1.4 -5.5 3-deoxy-7-phosphoheptulonate synthase, class II compare
Psest_3270 -1.4 -2.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3351 -1.4 -4.1 peptide chain release factor 3 compare
Psest_0257 -1.4 -3.7 Predicted Zn-dependent peptidases compare
Psest_0060 -1.4 -2.3 Predicted Fe-S protein compare
Psest_3317 -1.4 -3.8 Phosphotransferase System HPr (HPr) Family compare
Psest_4310 -1.3 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0955 -1.3 -4.1 D,L-lactate:H+ symporter (from data) compare
Psest_1031 -1.3 -5.7 Uncharacterized protein conserved in bacteria compare
Psest_1999 -1.3 -1.8 pseudouridine synthase compare
Psest_2863 -1.3 -5.3 Transcriptional regulator compare
Psest_4197 -1.3 -1.5 general secretion pathway protein J compare
Psest_2923 -1.3 -1.7 hypothetical protein compare
Psest_1012 -1.3 -4.0 Signal transduction histidine kinase compare
Psest_0449 -1.3 -8.9 Glutamine synthetase adenylyltransferase compare
Psest_2667 -1.3 -1.9 Uncharacterized protein involved in propionate catabolism compare
Psest_0175 -1.3 -3.6 Xaa-Pro aminopeptidase compare
Psest_1388 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1132 -1.3 -4.4 mutator mutT protein compare
Psest_4078 -1.2 -1.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3212 -1.2 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0529 -1.2 -6.4 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3840 -1.2 -3.1 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3550 -1.2 -1.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_3204 -1.2 -6.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3872 -1.2 -5.5 FAD/FMN-containing dehydrogenases compare
Psest_1762 -1.2 -2.6 cytochrome c-type biogenesis protein CcmI compare
Psest_2234 -1.2 -6.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0442 -1.2 -4.5 ATPases of the AAA+ class compare
Psest_0334 -1.1 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1478 -1.1 -5.2 Predicted membrane protein compare
Psest_2083 -1.1 -4.4 Putative sterol carrier protein compare
Psest_2339 -1.1 -4.5 transcription elongation factor GreB compare
Psest_4403 -1.1 -3.6 hypothetical protein compare
Psest_0165 -1.1 -2.2 protein-export chaperone SecB compare
Psest_1631 -1.1 -1.4 Uncharacterized conserved small protein compare
Psest_3818 -1.1 -3.7 endoribonuclease L-PSP, putative compare
Psest_3339 -1.1 -2.7 Signal transduction histidine kinase compare
Psest_3860 -1.1 -1.6 Predicted permeases compare
Psest_3214 -1.1 -4.9 phosphate acetyltransferase compare
Psest_0484 -1.0 -3.1 hypothetical protein compare
Psest_2901 -1.0 -1.1 hypothetical protein compare
Psest_0050 -1.0 -2.7 Predicted acetyltransferase compare
Psest_0734 -1.0 -1.5 RND family efflux transporter, MFP subunit compare
Psest_3128 -1.0 -2.6 Protein-disulfide isomerase compare
Psest_3178 -1.0 -2.3 formyltetrahydrofolate deformylase compare
Psest_0737 -1.0 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_1597 -1.0 -2.2 Protein of unknown function (DUF2933). compare
Psest_0533 -1.0 -2.6 Sel1 repeat. compare
Psest_2504 -1.0 -3.3 flagellar biosynthetic protein FliS compare
Psest_1417 -1.0 -1.0 hypothetical protein compare
Psest_3543 -1.0 -2.2 hypothetical protein compare
Psest_0537 -1.0 -0.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0114 -1.0 -2.0 RNA polymerase sigma factor, sigma-70 family compare
Psest_1488 -1.0 -7.7 outer membrane porin, OprD family. compare
Psest_3857 -1.0 -4.0 ATPases involved in chromosome partitioning compare
Psest_2308 -1.0 -1.4 Predicted Fe-S protein compare
Psest_3693 -1.0 -1.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3973 -1.0 -1.2 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1639 -1.0 -3.8 23S rRNA (uracil-5-)-methyltransferase RumA compare


Specific Phenotypes

For 12 genes in this experiment

For stress Sodium Chlorate in Pseudomonas stutzeri RCH2

For stress Sodium Chlorate across organisms