Experiment set6H37 for Shewanella oneidensis MR-1

Compare to:

L-Histidine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
SO2406 aspC-2 +8.6 72.4 aspartate aminotransferase (NCBI ptt file) compare
SO0603 hfq +8.4 3.5 host factor-I protein (NCBI ptt file) compare
SO0770 mdh +7.8 39.5 malate dehydrogenase (NCBI ptt file) compare
SO0577 +3.8 27.4 sensory box histidine kinase/response regulator (NCBI ptt file) compare
SO3988 arcA +3.6 13.4 aerobic respiration control protein ArcA (NCBI ptt file) compare
SO1327 +3.4 12.3 sensor histidine kinase-related protein (NCBI ptt file) compare
SO0943 +3.4 29.1 sensory box protein, putative (NCBI ptt file) compare
SO3228 fliF +2.9 10.4 flagellar M-ring protein FliF (NCBI ptt file) compare
SO3269 +2.6 12.0 cytidylyltransferase domain protein (NCBI ptt file) compare
SO3227 fliG +2.5 9.6 flagellar motor switch protein FliG (NCBI ptt file) compare
SO0393 fis +2.4 4.5 DNA-binding protein Fis (NCBI ptt file) compare
SO3218 fliP +2.3 4.9 flagellar biosynthetic protein FliP (NCBI ptt file) compare
SO3217 fliQ +2.3 3.8 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO0363 +2.1 2.1 hypothetical protein (NCBI ptt file) compare
SO3219 fliO +2.1 4.2 flagellar protein FliO (NCBI ptt file) compare
SO3202 cheW-3 +2.0 5.5 purine-binding chemotaxis protein CheW (NCBI ptt file) compare
SO4228 +2.0 5.3 conserved hypothetical protein TIGR00242 (NCBI ptt file) compare
SO1383 +1.9 8.6 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO4227 +1.8 3.6 conserved hypothetical protein TIGR00006 (NCBI ptt file) compare
SO3261 +1.8 6.7 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO3251 cheR-2 +1.7 6.5 chemotaxis protein methyltransferase CheR (NCBI ptt file) compare
SO3207 +1.7 7.4 chemotaxis protein (NCBI ptt file) compare
SO0216 +1.7 2.8 hypothetical protein (NCBI ptt file) compare
SO1818 +1.7 8.7 conserved hypothetical protein (NCBI ptt file) compare
SO3268 +1.7 8.9 alpha amylase domain protein (NCBI ptt file) compare
SO3213 flhA +1.6 5.2 flagellar biosynthesis protein FlhA (NCBI ptt file) compare
SO3249 flgC +1.6 1.8 flagellar basal-body rod protein FlgC (NCBI ptt file) compare
SO4626 bioH +1.6 7.9 bioH protein (NCBI ptt file) compare
SO3252 cheV-3 +1.6 6.3 chemotaxis protein CheV (NCBI ptt file) compare
SO3221 fliM +1.6 5.1 flagellar motor switch protein FliM (NCBI ptt file) compare
SO3216 fliR +1.5 3.4 flagellar biosynthetic protein FliR (NCBI ptt file) compare
SO4686 +1.5 5.2 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO2489 zwf +1.5 3.9 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
SO4687 ugd +1.5 6.2 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO1784 feoB +1.5 2.9 ferrous iron transport protein B (NCBI ptt file) compare
SO_t078 tRNA-Arg-9 +1.4 4.7 tRNA-Arg (RefSeq) compare
SO3220 fliN +1.4 2.4 flagellar motor switch protein FliN (NCBI ptt file) compare
SO3126 ogt +1.4 2.7 methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) compare
SO3253 +1.4 4.9 flagellar basal-body P-ring formation protein FlgA, putative (NCBI ptt file) compare
SO_2937 +1.4 7.7 no description compare
SO3242 flgI +1.4 3.4 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO3265 +1.3 5.9 conserved hypothetical protein (NCBI ptt file) compare
SO3270 +1.3 2.1 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3171 +1.3 9.1 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3262 ilvB +1.3 7.2 acetolactate synthase isozyme I, large subunit (NCBI ptt file) compare
SO2785 rne +1.3 2.7 ribonuclease E (NCBI ptt file) compare
SO3229 fliE +1.3 2.8 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO1203 nusA +1.3 0.9 N utilization substance protein A (NCBI ptt file) compare
SO2668 +1.2 7.7 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) compare
SO3224 fliJ +1.2 3.0 flagellar protein FliJ (NCBI ptt file) compare
SO2675 +1.2 6.0 conserved hypothetical protein (NCBI ptt file) compare
SO4728 +1.2 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO3263 +1.2 4.8 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) compare
SO3233 fliS +1.2 4.3 flagellar protein FliS (NCBI ptt file) compare
SO3186 rfbA +1.2 6.1 glucose-1-phosphate-thymidylyltransferase (NCBI ptt file) compare
SO0298 gmhA +1.2 2.2 phosphoheptose isomerase (NCBI ptt file) compare
SO2638 ldh +1.2 6.2 leucine dehydrogenase (NCBI ptt file) compare
SO3208 cheZ +1.1 1.6 chemotaxis protein CheZ (NCBI ptt file) compare
SO2336 pgm +1.1 1.7 phosphoglucomutase, alpha-D-glucose phosphate-specific (NCBI ptt file) compare
SO2739 bioF +1.1 5.4 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
SO1107 nqrE-2 +1.1 3.2 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) compare
SO2248 sdaA +1.1 5.7 L-serine dehydratase 1 (NCBI ptt file) compare
SO3243 flgH +1.1 3.3 flagellar L-ring protein FlgH (NCBI ptt file) compare
SO1840 +1.1 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2738 bioC +1.1 2.7 biotin synthesis protein BioC (NCBI ptt file) compare
SOA0014 +1.1 2.7 hypothetical protein (NCBI ptt file) compare
SO2879 uraA +1.1 1.7 uracil permease (NCBI ptt file) compare
SO0136 +1.1 3.0 hypothetical protein (NCBI ptt file) compare
SO1152 +1.1 2.1 hypothetical protein (NCBI ptt file) compare
SO1123 +1.1 3.1 hypothetical protein (NCBI ptt file) compare
SO2483 +1.0 4.0 aspartate aminotransferase, putative (NCBI ptt file) compare
SOA0011 +1.0 6.3 conserved hypothetical protein (NCBI ptt file) compare
SO3247 flgE +1.0 4.6 flagellar hook protein FlgE (NCBI ptt file) compare
SO2491 pykA +1.0 2.2 pyruvate kinase II (NCBI ptt file) compare
SO2682 +1.0 1.6 hypothetical protein (NCBI ptt file) compare
SO1803 sapC +1.0 2.2 peptide ABC transporter, permease protein (NCBI ptt file) compare
SO1703 +1.0 1.3 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3174 +1.0 6.0 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO1804 sapB +1.0 1.9 peptide ABC transporter, permease protein (NCBI ptt file) compare
SO3169 +1.0 1.9 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO2851 +1.0 3.2 histidinol phosphatase domain protein (NCBI ptt file) compare
SO4758 gidA +1.0 3.5 glucose-inhibited division protein A (NCBI ptt file) compare
SO1648 +0.9 1.9 cold shock domain family protein (NCBI ptt file) compare
SO_A0007 +0.9 5.9 hypothetical protein (NCBI) compare
SO2340 +0.9 6.4 alpha keto acid dehydrogenase complex, E1 component, beta subunit (NCBI ptt file) compare
SO1738 +0.9 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO0045 +0.9 1.8 Rrf2 family protein (NCBI ptt file) compare
SO_A0006 +0.9 6.2 ParA family protein (NCBI) compare
SO2305 lrp +0.9 2.2 leucine-responsive regulatory protein (NCBI ptt file) compare
SOA0002 +0.9 9.0 type II restriction-modification system activator, putative (NCBI ptt file) compare
SO0947 srmB +0.9 5.8 ATP-dependent RNA helicase SrmB (NCBI ptt file) compare
SO1819 dinG +0.9 6.4 ATP-dependent helicase DinG (NCBI ptt file) compare
SO1182 +0.9 2.0 hypothetical protein (NCBI ptt file) compare
SO4546 +0.9 3.0 hypothetical protein (NCBI ptt file) compare
SO4094 cafA +0.9 3.2 ribonuclease G (NCBI ptt file) compare
SO3813 +0.9 1.7 hypothetical protein (NCBI ptt file) compare
SO3239.2 +0.9 2.0 hypothetical flagellar protein (NCBI ptt file) compare
SO3192 +0.9 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO2921 folX +0.9 1.9 D-erythro-7,8-dihydroneopterin triphosphate epimerase (NCBI ptt file) compare
SO3066 +0.9 5.0 conserved hypothetical protein (NCBI ptt file) compare
SO2474 +0.9 1.9 carbonic anhydrase family protein (NCBI ptt file) compare
SO0394 +0.9 3.2 conserved hypothetical protein (NCBI ptt file) compare
SO0400 +0.9 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO_3820 +0.9 2.7 no description compare
SO3182 +0.9 5.7 acetyltransferase, GNAT family (NCBI ptt file) compare
SO3161 +0.9 1.5 glucose-1-phosphate thymidylyltransferase-related protein (NCBI ptt file) compare
SO1050 +0.9 1.4 hypothetical protein (NCBI ptt file) compare
SO1090 +0.9 1.3 ApbE family protein, putative (NCBI ptt file) compare
SOA0004 +0.8 4.9 type II DNA modification methyltransferase (NCBI ptt file) compare
SOA0003 +0.8 8.2 type II restriction endonuclease, putative (NCBI ptt file) compare
SO_A0174 +0.8 2.3 hypothetical protein (NCBI) compare
SO3483 +0.8 4.2 HlyD family secretion protein (NCBI ptt file) compare
SO3184 +0.8 7.3 conserved hypothetical protein (NCBI ptt file) compare
SO_A0009 +0.8 3.0 hypothetical protein (NCBI) compare
SO2351 +0.8 4.0 conserved hypothetical protein (NCBI ptt file) compare
SO3587 +0.8 1.3 hypothetical protein (NCBI ptt file) compare
SOA0172 +0.8 6.0 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO4034 deaD +0.8 3.2 ATP-dependent RNA helicase DeaD (NCBI ptt file) compare
SO4587 +0.8 3.9 conserved hypothetical protein TIGR00095 (NCBI ptt file) compare
SO1665 galU +0.8 1.9 UTP-glucose-1-phosphate uridylyltransferase (NCBI ptt file) compare
SO3431 mutS +0.8 2.5 DNA mismatch repair protein MutS (NCBI ptt file) compare
SO3188 rfbB +0.8 5.5 dTDP-glucose 4,6-dehydratase (NCBI ptt file) compare
SO1940 +0.8 3.0 hypothetical protein (NCBI ptt file) compare
SO_1211 +0.8 3.7 no description compare
SO0624 crp +0.8 1.6 catabolite gene activator (NCBI ptt file) compare
SO2623 aat +0.8 2.3 leucyl/phenylalanyl-tRNA--protein transferase (NCBI ptt file) compare
SOA0005 +0.8 5.5 hypothetical protein (NCBI ptt file) compare
SOA0012 umuC +0.8 5.7 umuC protein (NCBI ptt file) compare
SO2414 +0.8 3.7 phosphoglycolate phosphatase, putative (NCBI ptt file) compare
SO2427 +0.8 4.7 TonB-dependent receptor, putative (NCBI ptt file) compare
SO3250 flgB +0.8 2.8 flagellar basal-body rod protein FlgB (NCBI ptt file) compare
SO_3452 +0.8 1.9 no description compare
SO3225 fliI +0.8 3.1 flagellum-specific ATP synthase FliI (NCBI ptt file) compare
SO0775 +0.8 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2341 +0.7 3.3 alpha keto acid dehydrogenase complex, E2 component (NCBI ptt file) compare
SO3921 hydB +0.7 1.5 periplasmic Fe hydrogenase, small subunit (NCBI ptt file) compare
SO0551 +0.7 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO3550 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
SO1103 nqrA-2 +0.7 2.3 NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file) compare
SO3179 +0.7 5.9 lipopolysaccharide biosynthesis polymerase, putative (NCBI ptt file) compare
SO3805 mpl +0.7 1.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) compare
SO4322 +0.7 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO3484 +0.7 5.8 AcrB/AcrD/AcrF family protein (NCBI ptt file) compare
SOA0008 +0.7 4.8 hypothetical protein (NCBI ptt file) compare
SOA0085 +0.7 1.2 ISSod8, transposase (NCBI ptt file) compare
SO2673 +0.7 2.9 hypothetical protein (NCBI ptt file) compare
SO2849 +0.7 1.6 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2604.1 +0.7 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3050 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
SOA0010 +0.7 2.5 conserved hypothetical protein (NCBI ptt file) compare
SOA0072 +0.7 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3248 flgD +0.7 1.8 basal-body rod modification protein FlgD (NCBI ptt file) compare
SO3035 ispZ +0.7 2.0 intracellular septation protein A (NCBI ptt file) compare
SO3175 asnB-2 +0.7 5.9 asparagine synthetase, glutamine-hydrolyzing (NCBI ptt file) compare
SO3014 +0.7 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO3419 trpR +0.7 3.0 trp operon repressor (NCBI ptt file) compare
SO2200 +0.6 2.5 ribosomal protein S6 modification protein, putative (NCBI ptt file) compare
SO3983 +0.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO3215 flhB +0.6 3.9 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SO0229 tufA +0.6 0.9 translation elongation factor Tu (NCBI ptt file) compare
SO3223 fliK +0.6 2.4 flagellar hook-length control protein FliK (NCBI ptt file) compare
SO3617 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
SO0030 sun +0.6 3.6 sun protein (NCBI ptt file) compare
SO1076 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
SO2339 +0.6 2.8 alpha keto acid dehydrogenase complex, E1 component, alpha subunit (NCBI ptt file) compare
SO3393 +0.6 1.3 transcriptional regulator, TetR family (NCBI ptt file) compare
SO0389 +0.6 2.8 hypothetical protein (NCBI ptt file) compare
SO4248 radC +0.6 3.1 DNA repair protein RadC (NCBI ptt file) compare
SO4196 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO4639 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO_1054 +0.6 1.6 no description compare
SO3634 +0.6 3.5 nucleotidyltransferase family protein (NCBI ptt file) compare
SOA0171 +0.6 3.0 hypothetical protein (NCBI ptt file) compare
SO3180 +0.6 5.1 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO2181 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
SO2208 +0.6 0.9 phosphotyrosine protein phosphatase (NCBI ptt file) compare
SO_4657 +0.6 4.3 no description compare
SO2913 pflA +0.6 1.3 pyruvate formate-lyase 1 activating enzyme (NCBI ptt file) compare
SO2888 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
SO3226 fliH +0.6 2.3 flagellar assembly protein FliH (NCBI ptt file) compare
SO3819.4 +0.6 1.5 hypothetical ammonia permease (NCBI ptt file) compare
SO0697 cutA +0.6 0.9 periplasmic divalent cation tolerance protein CutA (NCBI ptt file) compare
SO3562 +0.6 3.3 proton/glutamate symporter, putative (NCBI ptt file) compare
SO3648 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2853 +0.6 2.8 3-oxoacyl-(acyl-carrier-protein) synthase III, putative (NCBI ptt file) compare
SO2774 fabF-1 +0.6 2.0 3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI ptt file) compare
SO2852 +0.6 1.4 transcriptional regulator, GntR family (NCBI ptt file) compare
SO2352 +0.6 1.8 bax protein, putative (NCBI ptt file) compare
SO4484 +0.6 1.6 cytochrome c-type protein Shp (NCBI ptt file) compare
SO2207 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO1529 pomA +0.6 1.5 chemotaxis motA protein (NCBI ptt file) compare
SO0808 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2739.1 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
SO1015 nuoH +0.6 2.7 NADH dehydrogenase I, H subunit (NCBI ptt file) compare
SO3176 +0.6 4.4 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO3896 +0.6 3.1 outer membrane porin, putative (NCBI ptt file) compare
SO3185 +0.6 4.6 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO0664 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
SO_t037 tRNA-Pro-4 +0.6 1.6 tRNA-Pro (RefSeq) compare
SO1796 lon +0.6 2.3 ATP-dependent protease La (NCBI ptt file) compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Histidine in Shewanella oneidensis MR-1

For nitrogen source L-Histidine across organisms