Experiment set6H25 for Shewanella oneidensis MR-1

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
SO2181 +0.8 1.6 hypothetical protein (NCBI ptt file) compare
SO3476 +0.8 2.2 hypothetical protein (NCBI ptt file) compare
SO1152 +0.7 1.3 hypothetical protein (NCBI ptt file) compare
SO1529 pomA +0.7 3.1 chemotaxis motA protein (NCBI ptt file) compare
SO2838 +0.7 2.0 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO2584 +0.7 3.4 hypothetical protein (NCBI ptt file) compare
SO1378 +0.7 1.8 ThiJ/PfpI family protein (NCBI ptt file) compare
SO2849 +0.6 1.7 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2727 +0.6 1.5 cytochrome c3 (NCBI ptt file) compare
SO1329 +0.6 4.1 adenylate cyclase-related protein (NCBI ptt file) compare
SO0844 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
SO2153.1 +0.6 2.4 hypothetical transposase (NCBI ptt file) compare
SO1487 +0.5 2.6 hypothetical protein (NCBI ptt file) compare
SO2396 +0.5 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO2557 +0.5 3.4 conserved hypothetical protein (NCBI ptt file) compare
SO3851 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
SO3819.1 +0.5 2.4 hypothetical ammonia permease (NCBI ptt file) compare
SO2398 pyrF +0.5 1.9 orotidine 5`-phosphate decarboxylase (NCBI ptt file) compare
SO1292 folK-2 +0.5 1.4 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file) compare
SO2061 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO4689 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO1832 ppiC-2 +0.5 1.5 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) compare
SO4490 +0.5 0.6 hypothetical protein (NCBI ptt file) compare
SO2983 +0.5 2.4 hypothetical protein (NCBI ptt file) compare
SO2381 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
SO4686 +0.5 3.1 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO2115 +0.5 2.6 asparaginase family protein (NCBI ptt file) compare
SO1234 torE +0.5 1.3 WARNINIG torE protein (NCBI ptt file) compare
SO3169 +0.5 1.2 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO1587 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO0094 +0.4 2.1 hypothetical protein (NCBI ptt file) compare
SO2595 +0.4 2.1 BNR repeat protein (NCBI ptt file) compare
SOA0010 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO3770 +0.4 1.0 conserved hypothetical protein TIGR00153 (NCBI ptt file) compare
SO0701 +0.4 2.0 transcriptional regulator, LysR family (NCBI ptt file) compare
SO2998 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO3097.4 +0.4 1.8 hypothetical sodium/proline symporter (NCBI ptt file) compare
SO3720 +0.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO1624 purU +0.4 1.4 formyltetrahydrofolate deformylase (NCBI ptt file) compare
SO4687 ugd +0.4 3.3 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO3239 flgL +0.4 2.4 flagellar hook-associated protein FlgL (NCBI ptt file) compare
SO3237 +0.4 1.6 flagellin (NCBI ptt file) compare
SO0428 +0.4 3.6 conserved hypothetical protein (NCBI ptt file) compare
SO2101 +0.4 1.0 lipoprotein, putative (NCBI ptt file) compare
SO0551 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO0299 +0.4 1.7 conserved hypothetical protein TIGR00252 (NCBI ptt file) compare
SO2627 +0.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4428 +0.4 2.5 DNA-binding response regulator (NCBI ptt file) compare
SO1975 +0.4 1.6 Zinc carboxypeptidase-related protein (NCBI ptt file) compare
SO2753.2 +0.4 2.1 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO0689 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO2860 +0.4 1.8 thiol:disulfide interchange protein, DsbA family (NCBI ptt file) compare
SO_A0009 +0.4 2.7 hypothetical protein (NCBI) compare
SO3648 +0.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2736 +0.4 3.1 conserved hypothetical protein (NCBI ptt file) compare
SO0734 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3225 fliI +0.4 2.6 flagellum-specific ATP synthase FliI (NCBI ptt file) compare
SO1947 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO3140 +0.4 1.8 thymidine kinase (NCBI ptt file) compare
SO2370 +0.4 2.4 site-specific recombinase, phage integrase family (NCBI ptt file) compare
SO2397 +0.4 2.1 oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) compare
SO4303 +0.4 2.3 hypothetical protein (NCBI ptt file) compare
SO2604 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO3972 +0.4 1.8 hypothetical transposase (NCBI ptt file) compare
SOA0172 +0.4 2.8 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO3229 fliE +0.4 0.8 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO1170 +0.4 0.9 iojap domain protein (NCBI ptt file) compare
SO3245 flgF +0.4 2.8 flagellar basal-body rod protein FlgF (NCBI ptt file) compare
SO2665 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO4185 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO1187 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO2562 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO3101 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO_2304 +0.4 1.7 no description compare
SO2438 +0.4 1.7 transcriptional regulator, LysR family (NCBI ptt file) compare
SO3109 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3517 ndh +0.4 2.6 NADH dehydrogenase (NCBI ptt file) compare
SO3261 +0.3 2.5 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO4210 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO2725 +0.3 1.4 transcriptional regulator, LuxR family (NCBI ptt file) compare
SO2180 +0.3 2.3 peptidase, M23/M37 family (NCBI ptt file) compare
SO1581 phnA +0.3 2.0 phnA protein (NCBI ptt file) compare
SO4035 +0.3 1.7 hypothetical protein (NCBI ptt file) compare
SO3475 +0.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3114 queA +0.3 1.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) compare
SO3698 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO0849 napD +0.3 0.9 napD protein (NCBI ptt file) compare
SO2634 +0.3 0.9 conserved hypothetical protein (NCBI ptt file) compare
SOA0171 +0.3 1.0 hypothetical protein (NCBI ptt file) compare
SO3265 +0.3 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO1166 +0.3 1.5 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO1759 +0.3 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO1444 +0.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2639 +0.3 0.6 hypothetical protein (NCBI ptt file) compare
SO4427 +0.3 2.1 sensor histidine kinase (NCBI ptt file) compare
SO0142 ribB +0.3 1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase (NCBI ptt file) compare
SO3168 +0.3 2.2 DnaJ domain protein (NCBI ptt file) compare
SO3152 +0.3 2.3 acetyltransferase, CysE/LacA/LpxA/NodL family (NCBI ptt file) compare
SO2082 +0.3 1.7 rod shape-determining-related protein (NCBI ptt file) compare
SO0936 +0.3 1.9 transcriptional regulator (NCBI ptt file) compare
SO1582 +0.3 1.0 transcriptional regulator, MarR family (NCBI ptt file) compare
SO3223 fliK +0.3 2.2 flagellar hook-length control protein FliK (NCBI ptt file) compare
SO2367 +0.3 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO0556 +0.3 1.1 hypothetical protein (NCBI ptt file) compare
SO3410 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO1756 +0.3 1.1 glyoxalase family protein (NCBI ptt file) compare
SO2761 purN +0.3 1.6 phosphoribosylglycinamide formyltransferase (NCBI ptt file) compare
SO4411 +0.3 2.2 hypothetical protein (NCBI ptt file) compare
SO1533 +0.3 1.6 glycine cleavage system transcriptional activator, putative (NCBI ptt file) compare
SO_1467 +0.3 1.4 no description compare
SO2988 +0.3 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3328 +0.3 1.1 acetyltransferase, GNAT family (NCBI ptt file) compare
SO4037 +0.3 1.9 hypothetical protein (NCBI ptt file) compare
SO2795 +0.3 1.7 glyoxalase family protein (NCBI ptt file) compare
SO3089 +0.3 1.5 fatty oxidation complex, beta subunit (NCBI ptt file) compare
SO3491 +0.3 2.1 HDIG domain protein (NCBI ptt file) compare
SO3219 fliO +0.3 1.1 flagellar protein FliO (NCBI ptt file) compare
SO_A0021 +0.3 1.0 no description compare
SO4547 +0.3 0.8 hypothetical protein (NCBI ptt file) compare
SO1124 +0.3 0.9 conserved hypothetical protein TIGR00011 (NCBI ptt file) compare
SO2989 +0.3 1.0 prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO3764 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0123 +0.3 2.0 acyltransferase family protein (NCBI ptt file) compare
SO3819 +0.3 1.2 nitrogen regulatory protein P-II (NCBI ptt file) compare
SO1892 atoD +0.3 0.8 acetate CoA-transferase, subunit A (NCBI ptt file) compare
SO4323 +0.3 1.9 GGDEF domain protein (NCBI ptt file) compare
SO1067 +0.3 1.0 hypothetical protein (NCBI ptt file) compare
SO2500 +0.3 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2311 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO0291 +0.3 1.3 hypothetical protein (NCBI ptt file) compare
SO2846 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3215 flhB +0.3 2.0 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SO2995 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO2268 hscA +0.3 0.8 chaperone protein HscA (NCBI ptt file) compare
SO4107 +0.3 1.7 hypothetical protein (NCBI ptt file) compare
SO3075 +0.3 1.2 RNA methyltransferase, TrmH family, putative (NCBI ptt file) compare
SO3059 +0.3 1.9 formate hydrogenlyase transcriptional activator, putative (NCBI ptt file) compare
SO2648 +0.3 2.2 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2769 +0.3 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO1663 napF +0.3 0.9 ferredoxin-type protein NapF (NCBI ptt file) compare
SO3217 fliQ +0.3 1.0 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO1774 +0.3 1.6 hypothetical Sugar diacid utilization regulator (NCBI ptt file) compare
SO0464 +0.3 1.1 MutT/nudix family protein (NCBI ptt file) compare
SO1763 sat +0.3 1.3 streptogramin A acetyl transferase (NCBI ptt file) compare
SO2510 +0.3 0.5 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO3250 flgB +0.3 1.4 flagellar basal-body rod protein FlgB (NCBI ptt file) compare
SO1728 +0.3 1.1 hypothetical protein (NCBI ptt file) compare
SO_A0125 +0.3 1.5 no description compare
SO4627 +0.3 1.9 hypothetical protein (NCBI ptt file) compare
SO0853 +0.3 1.6 pilin, putative (NCBI ptt file) compare
SO1703 +0.3 0.6 transcriptional regulator, TetR family (NCBI ptt file) compare
SO0761 glnB-1 +0.3 0.9 nitrogen regulatory protein P-II 1 (NCBI ptt file) compare
SO0616 +0.3 1.2 esterase, putative (NCBI ptt file) compare
SO0338 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO_3046 +0.3 1.7 no description compare
SO3933 +0.3 1.9 membrane protein, putative (NCBI ptt file) compare
SO0340 ilvE +0.3 1.2 branched-chain amino acid aminotransferase (NCBI ptt file) compare
SO_3452 +0.3 0.7 no description compare
SO3393 +0.3 0.6 transcriptional regulator, TetR family (NCBI ptt file) compare
SO1552.1 +0.3 0.7 hypothetical protease with the C-terminal PDZ domain (NCBI ptt file) compare
SO4320 aggA +0.3 1.9 agglutination protein (NCBI ptt file) compare
SO2201 +0.3 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO3206 cheB-3 +0.3 1.4 protein-glutamate methylesterase CheB (NCBI ptt file) compare
SO_2754 +0.3 1.1 no description compare
SO4456 +0.3 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO3099 +0.3 1.9 long-chain fatty acid transport protein, putative (NCBI ptt file) compare
SO0994 +0.3 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2146 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO1971 +0.3 2.3 AMP-binding family protein (NCBI ptt file) compare
SO1352 acpS +0.3 0.9 holo-(acyl-carrier protein) synthase (NCBI ptt file) compare
SO2063 +0.3 1.1 hypothetical protein (NCBI ptt file) compare
SO4064 +0.3 1.7 mcbg protein, putative (NCBI ptt file) compare
SO1572 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO3657 +0.3 1.5 transporter, LysE family (NCBI ptt file) compare
SO2906 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0082 +0.3 0.8 transcriptional regulator, MerR family (NCBI ptt file) compare
SO3964 +0.3 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO0907 nqrF-1 +0.3 1.1 NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) compare
SO4244 +0.3 1.8 hypothetical protein (NCBI ptt file) compare
SO0139 ftn +0.3 1.6 ferritin (NCBI ptt file) compare
SO3582 +0.3 2.0 methyl-accepting chemotaxis protein (NCBI) compare
SO3064 purF +0.3 1.3 amidophosphoribosyltransferase (NCBI ptt file) compare
SO1389 +0.3 1.5 ROK family protein (NCBI ptt file) compare
SO1139 fklB +0.3 1.3 peptidyl-prolyl cis-trans isomerase FklB (NCBI ptt file) compare
SO3819.3 +0.3 1.1 hypothetical ammonia permease (NCBI ptt file) compare
SO1332 ptsP +0.3 2.0 phosphoenolpyruvate-protein phosphotransferase PtsP (NCBI ptt file) compare
SO1738 +0.3 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO2567 menG-1 +0.3 0.8 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) compare
SO3269 +0.3 2.0 cytidylyltransferase domain protein (NCBI ptt file) compare
SO0396 frdC +0.3 1.6 fumarate reductase cytochrome B subunit (NCBI ptt file) compare
SO4402 +0.2 1.1 hypothetical protein (NCBI ptt file) compare
SOA0030 +0.2 1.4 hypothetical protein (NCBI ptt file) compare
SO2467 +0.2 1.2 adhesion-related protein (NCBI ptt file) compare
SO3849 +0.2 0.9 conserved domain protein (NCBI ptt file) compare
SO_1054 +0.2 0.9 no description compare
SO0650 +0.2 1.5 hypothetical protein (NCBI ptt file) compare
SO1588 +0.2 0.9 hypothetical protein (NCBI ptt file) compare
SO2479 +0.2 0.4 hypothetical protein (NCBI ptt file) compare
SO4052 +0.2 1.2 transcriptional regulator, MarR family (NCBI ptt file) compare
SO1570 +0.2 2.0 GGDEF domain protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in lb experiments