Experiment set5S880 for Rhodanobacter sp. FW510-T8
Survival; Treatment=20250415-M4-SZ1-UF; TreatmentDuration=1week; Outgrowth=R2A_Kan5
Group: survivalMedia: + Treatment=20250415-M4-SZ1-UF; TreatmentDuration=1week; Outgrowth=R2A_Kan5
Culturing: rhodanobacter_T8_ML1, tube, Aerobic, at 30 (C)
By: Adams lab on 9/22/25
Specific Phenotypes
For 9 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid metabolism
- Valine, leucine and isoleucine degradation
- Urea cycle and metabolism of amino groups
- Geraniol degradation
- Lysine biosynthesis
- Arginine and proline metabolism
- Glutathione metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Brassinosteroid biosynthesis
- Caprolactam degradation
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-ornithine biosynthesis I | 5 | 5 | 1 |
| pyruvate fermentation to butanol II (engineered) | 6 | 4 | 1 |
| L-arginine biosynthesis III (via N-acetyl-L-citrulline) | 9 | 9 | 1 |
| L-arginine biosynthesis I (via L-ornithine) | 9 | 8 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 8 | 1 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 12 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 18 | 1 |
| oleate β-oxidation | 35 | 32 | 1 |