Experiment set5S74 for Phocaeicola vulgatus CL09T03C04

diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6

Group: mouse
Media: + diet=StandardDiet; sample=FecalPellet; inoculation=MixComm
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24

Specific Phenotypes

For 14 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm in Phocaeicola vulgatus CL09T03C04

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm across organisms

SEED Subsystems

Subsystem	#Specific
D-Galacturonate and D-Glucuronate Utilization	1
D-Tagatose and Galactitol Utilization	1
DNA-replication	1
DNA repair, bacterial	1
DNA repair, bacterial RecFOR pathway	1
L-rhamnose utilization	1
Xylose utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fructose and mannose metabolism
• Ascorbate and aldarate metabolism
• Nucleotide sugars metabolism
• Glycolysis / Gluconeogenesis
• Pentose and glucuronate interconversions
• Galactose metabolism
• Ubiquinone and menaquinone biosynthesis
• Starch and sucrose metabolism
• Aminosugars metabolism
• Glycosaminoglycan degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-lyxose degradation	4	2	1
L-rhamnose degradation I	5	5	1
4-deoxy-L-threo-hex-4-enopyranuronate degradation	5	4	1
superpathway of fucose and rhamnose degradation	12	9	1
superpathway of microbial D-galacturonate and D-glucuronate degradation	31	14	1
superpathway of pentose and pentitol degradation	42	11	1