Experiment set5S72 for Phocaeicola vulgatus CL09T03C04

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5

Group: mouse
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24

Specific Phenotypes

For 5 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms

SEED Subsystems

Subsystem	#Specific
DNA repair, bacterial RecFOR pathway	1
De Novo Purine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Glutamate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
5-aminoimidazole ribonucleotide biosynthesis II	5	5	1
5-aminoimidazole ribonucleotide biosynthesis I	5	5	1
superpathway of 5-aminoimidazole ribonucleotide biosynthesis	6	6	1
superpathway of purine nucleotides de novo biosynthesis I	21	21	1
superpathway of purine nucleotides de novo biosynthesis II	26	23	1
superpathway of histidine, purine, and pyrimidine biosynthesis	46	42	1