Experiment set5S600 for Mycobacterium tuberculosis H37Rv
cholesterol 100uM carbon source
Group: carbon sourceMedia: Sautons minimal media with no carbon + cholesterol (100 uM)
Culturing: MycoTube_ML10, tube, Aerobic, at 37 (C)
By: Kayla Dinshaw on 3/1/25
Media components: 0.8 g/L Sodium Chloride, 2.5 g/L Disodium phosphate, 1 g/L Potassium phosphate monobasic, 0.2 g/L L-Asparagine, 0.05 g/L Ferric ammonium citrate, 0.02 g/L Magnesium sulfate, 0.0005 g/L Calcium chloride, 1e-05 g/L Zinc sulfate heptahydrate, 0.2 vol% Ethanol, 0.05 vol% Tyloxapol
Specific Phenotypes
For 7 genes in this experiment
For carbon source cholesterol in Mycobacterium tuberculosis H37Rv
For carbon source cholesterol across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Fermentations: Mixed acid | 1 |
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid metabolism
- Tyrosine metabolism
- alpha-Linolenic acid metabolism
- Glycolysis / Gluconeogenesis
- Puromycin biosynthesis
- Glycine, serine and threonine metabolism
- Geraniol degradation
- Nucleotide sugars metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Trinitrotoluene degradation
- Propanoate metabolism
- 3-Chloroacrylic acid degradation
- Ethylbenzene degradation
- Methane metabolism
- Retinol metabolism
- Porphyrin and chlorophyll metabolism
- Limonene and pinene degradation
- Carotenoid biosynthesis - General
- Caprolactam degradation
- Alkaloid biosynthesis I
- Alkaloid biosynthesis II
- Metabolism of xenobiotics by cytochrome P450
- Insect hormone biosynthesis
- Drug metabolism - cytochrome P450
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: