Experiment set5S599 for Mycobacterium tuberculosis H37Rv

Compare to:

cholesterol 100uM carbon source

200 most important genes:

  gene name fitness t score description  
Rv3570c -2.6 -6.2 Possible oxidoreductase. Possible 3-hydroxy-9,10-seconandrost-1,3,5(10)-triene-9,17-dione hydroxylase. compare
Rv3249c -2.4 -1.7 Possible transcriptional regulatory protein (probably TetR-family) compare
Rv3556c -2.3 -3.3 Probable acetyl-CoA acetyltransferase FadA6 (acetoacetyl-CoA thiolase) compare
Rv3499c -2.2 -9.1 Mce-family protein Mce4A compare
Rv2850c -2.2 -0.8 Possible magnesium chelatase compare
Rv3495c -2.2 -8.7 Possible Mce-family lipoprotein LprN (Mce-family lipoprotein Mce4E) compare
Rv0949 -2.1 -1.0 Probable ATP-dependent DNA helicase II UvrD1 compare
Rv3496c -2.0 -12.4 Mce-family protein Mce4D compare
Rv3571 -2.0 -4.1 Reductase component of 3-ketosteroid-9-alpha-hydroxylase KshB compare
Rv3492c -2.0 -2.5 Conserved hypothetical Mce associated protein compare
Rv0694 -1.9 -5.1 Possible L-lactate dehydrogenase (cytochrome) LldD1 compare
Rv3537 -1.9 -6.4 Probable dehydrogenase compare
Rv3494c -1.9 -7.9 Mce-family protein Mce4F compare
Rv2702 -1.8 -0.7 Polyphosphate glucokinase PpgK (polyphosphate-glucose phosphotransferase) compare
Rv0655 -1.8 -4.5 Possible ribonucleotide-transport ATP-binding protein ABC transporter Mkl compare
Rv0761c -1.8 -5.0 Possible zinc-containing alcohol dehydrogenase NAD dependent AdhB compare
Rv0696 -1.8 -3.7 Probable membrane sugar transferase compare
Rv3498c -1.7 -5.4 Mce-family protein Mce4B compare
Rv3500c -1.7 -6.9 Conserved integral membrane protein YrbE4B. Possible ABC transporter. compare
Rv3716c -1.7 -0.8 Conserved protein compare
Rv1259 -1.7 -1.2 Probable uracil DNA glycosylase, UdgB compare
Rv1046c -1.6 -1.0 Hypothetical protein compare
Rv3557c -1.6 -4.6 Transcriptional regulatory protein (probably TetR-family) compare
Rv0695 -1.6 -2.7 Conserved hypothetical protein compare
Rv0692 -1.6 -4.6 Conserved hypothetical protein compare
Rv1062 -1.6 -0.9 Conserved hypothetical protein compare
Rv0249c -1.6 -4.2 Probable succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase) compare
Rv3513c -1.5 -1.2 Probable fatty-acid-CoA ligase FadD18 (fragment) (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) compare
Rv3497c -1.5 -6.6 Mce-family protein Mce4C compare
Rv0610c -1.5 -0.7 Hypothetical protein compare
Rv3526 -1.5 -4.9 Oxygenase component of 3-ketosteroid-9-alpha-hydroxylase KshA compare
Rv3544c -1.5 -4.5 Probable acyl-CoA dehydrogenase FadE28 compare
Rv3150 -1.5 -4.3 Probable NADH dehydrogenase I (chain F) NuoF (NADH-ubiquinone oxidoreductase chain F) compare
Rv3920c -1.5 -1.1 Conserved protein similar to jag protein compare
Rv2799 -1.5 -7.7 Probable membrane protein compare
Rv3564 -1.4 -2.2 Probable acyl-CoA dehydrogenase FadE33 compare
Rv0157A -1.4 -1.4 Conserved protein compare
Rv3550 -1.4 -2.2 Probable enoyl-CoA hydratase EchA20 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) compare
Rv0742 -1.4 -1.5 PE-PGRS family protein PE_PGRS8 compare
Rv3569c -1.4 -1.5 4,9-DHSA hydrolase compare
Rv1131 -1.4 -2.6 Probable methylcitrate synthase PrpC compare
Rv3501c -1.4 -4.9 Conserved integral membrane protein YrbE4A. Possible ABC transporter. compare
Rv2206 -1.3 -2.1 Probable conserved transmembrane protein compare
Rv1112 -1.3 -1.4 Probable GTP binding protein compare
Rv2222c -1.3 -2.5 Probable glutamine synthetase GlnA2 (glutamine synthase) (GS-II) compare
Rv2793c -1.3 -1.1 Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase) compare
Rv0248c -1.3 -3.5 Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase) compare
Rv2707 -1.3 -8.3 Probable conserved transmembrane alanine and leucine rich protein compare
Rv3428c -1.2 -0.9 Possible transposase compare
Rv0677c -1.2 -1.6 Possible conserved membrane protein MmpS5 compare
Rv3338 -1.2 -1.0 Conserved hypothetical protein compare
Rv3013 -1.2 -1.0 Conserved protein compare
Rv3502c -1.2 -3.9 Probable short-chain type dehydrogenase/reductase. Possible 17-beta-hydroxysteroid dehydrogenase. compare
Rv3493c -1.2 -3.0 Conserved hypothetical Mce associated alanine and valine rich protein compare
Rv3527 -1.2 -1.2 Hypothetical protein compare
Rv2635 -1.1 -0.6 Hypothetical protein compare
Rv2796c -1.1 -2.1 Probable conserved lipoprotein LppV compare
Rv2369c -1.1 -0.9 Hypothetical protein compare
Rv3567c -1.1 -2.5 Possible oxidoreductase. Possible 3-hydroxy-9,10-seconandrost-1,3,5(10)-triene-9,17-dione hydroxylase. compare
Rv3543c -1.1 -2.8 Probable acyl-CoA dehydrogenase FadE29 compare
Rv3176c -1.1 -2.6 Probable epoxide hydrolase MesT (epoxide hydratase) (arene-oxide hydratase) compare
Rv0247c -1.1 -0.5 Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase) compare
Rv3540c -1.1 -3.0 Probable lipid transfer protein or keto acyl-CoA thiolase Ltp2 compare
Rv2862A -1.1 -2.5 Possible antitoxin VapB23 compare
Rv1627c -1.1 -3.6 Probable nonspecific lipid-transfer protein compare
Rv3193c -1.1 -1.2 Probable conserved transmembrane protein compare
Rv0436c -1.1 -1.6 Probable CDP-diacylglycerol--serine O-phosphatidyltransferase PssA (PS synthase) (phosphatidylserine synthase) compare
Rv0760c -1.0 -1.4 Conserved protein compare
Rv0451c -1.0 -1.2 Probable conserved membrane protein MmpS4 compare
Rv3747 -1.0 -1.7 Conserved protein compare
Rv3553 -1.0 -1.5 Possible oxidoreductase compare
Rv1130 -1.0 -4.2 Possible methylcitrate dehydratase PrpD compare
Rv3672c -1.0 -1.3 Conserved hypothetical protein compare
Rv3546 -1.0 -2.2 Probable acetyl-CoA acetyltransferase FadA5 (acetoacetyl-CoA thiolase) compare
Rv0201c -1.0 -1.3 Conserved protein compare
Rv3148 -1.0 -2.8 Probable NADH dehydrogenase I (chain D) NuoD (NADH-ubiquinone oxidoreductase chain D) compare
Rv3198c -1.0 -0.8 Probable ATP-dependent DNA helicase II UvrD2 compare
Rv3552 -1.0 -2.0 Possible CoA-transferase (beta subunit) compare
Rv2462c -1.0 -3.1 Probable trigger factor (TF) protein Tig compare
Rv0346c -0.9 -6.1 Possible L-asparagine permease AnsP2 (L-asparagine transport protein) compare
Rv3180c -0.9 -2.9 Hypothetical alanine rich protein compare
Rv2055c -0.9 -1.0 30S ribosomal protein S18 RpsR2 compare
Rv0470c -0.9 -1.5 Mycolic acid synthase PcaA (cyclopropane synthase) compare
Rv3563 -0.9 -0.9 Probable acyl-CoA dehydrogenase FadE32 compare
Rv1908c -0.9 -1.3 Catalase-peroxidase-peroxynitritase T KatG compare
Rv1356c -0.9 -3.4 Hypothetical protein compare
Rv2021c -0.9 -1.7 Transcriptional regulatory protein compare
Rv1322 -0.9 -1.9 Conserved hypothetical protein compare
Rv3171c -0.9 -0.8 Possible non-heme haloperoxidase Hpx compare
Rv1628c -0.9 -3.1 Conserved protein compare
Rv3561 -0.9 -3.0 Probable fatty-acid-CoA ligase FadD3 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) compare
Rv3545c -0.9 -3.4 Probable cytochrome P450 125 Cyp125 compare
Rv0693 -0.9 -1.5 Probable coenzyme PQQ synthesis protein E PqqE (coenzyme PQQ synthesis protein III) compare
Rv1129c -0.9 -1.5 Probable transcriptional regulator protein compare
Rv3033 -0.9 -0.5 Unknown protein compare
Rv3549c -0.9 -1.8 Probable short-chain type dehydrogenase/reductase compare
Rv3316 -0.9 -1.6 Probable succinate dehydrogenase (cytochrome B-556 subunit) SdhC (succinic dehydrogenase) (fumarate reductase) (fumarate dehydrogenase) (fumaric hydrogenase) compare
Rv3723 -0.9 -2.0 Probable conserved transmembrane protein compare
Rv3286c -0.8 -1.4 Alternative RNA polymerase sigma factor SigF compare
Rv0033 -0.8 -2.0 Probable acyl carrier protein AcpA (ACP) compare
Rv1831 -0.8 -2.4 Hypothetical protein compare
Rv0955 -0.8 -1.0 Probable conserved integral membrane protein compare
Rv2321c -0.8 -1.0 Probable ornithine aminotransferase (C-terminus part) RocD2 (ornithine--oxo-acid aminotransferase) compare
Rv2102 -0.8 -2.2 Conserved hypothetical protein compare
Rv2250c -0.8 -2.6 Possible transcriptional regulatory protein compare
Rv2782c -0.8 -1.8 Probable zinc protease PepR compare
Rv2281 -0.8 -1.7 Putative phosphate-transport permease PitB compare
Rv3157 -0.8 -4.1 Probable NADH dehydrogenase I (chain M) NUOK (NADH-ubiquinone oxidoreductase chain M) compare
Rv3346c -0.8 -1.0 Conserved transmembrane protein compare
Rv1691 -0.8 -1.3 Conserved hypothetical protein compare
Rv3771c -0.8 -1.1 Conserved hypothetical protein compare
Rv2849c -0.8 -2.7 Probable cob(I)alamin adenosyltransferase CobO (corrinoid adenosyltransferase) (corrinoid adotransferase activity) compare
Rv2049c -0.8 -0.8 Conserved hypothetical protein compare
Rv2232 -0.8 -1.2 Protein tyrosine kinase transcriptional regulatory protein PtkA compare
Rv3147 -0.8 -1.6 Probable NADH dehydrogenase I (chain C) NuoC (NADH-ubiquinone oxidoreductase chain C) compare
Rv1798 -0.8 -0.7 ESX conserved component EccA5. ESX-5 type VII secretion system protein. compare
Rv3371 -0.8 -1.7 Possible triacylglycerol synthase (diacylglycerol acyltransferase) compare
Rv3149 -0.7 -2.8 Probable NADH dehydrogenase I (chain E) NuoE (NADH-ubiquinone oxidoreductase chain E) compare
Rv1897c -0.7 -1.3 Conserved hypothetical protein compare
Rv0038 -0.7 -2.5 Conserved protein compare
Rv1422 -0.7 -0.8 Conserved hypothetical protein compare
Rv1072 -0.7 -0.6 Probable conserved transmembrane protein compare
Rv1507c -0.7 -1.0 Conserved protein compare
Rv1010 -0.7 -1.0 Probable dimethyladenosine transferase KsgA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (high level kasugamycin resistance protein KsgA) (kasugamycin dimethyltransferase) compare
Rv2383c -0.7 -1.5 Phenyloxazoline synthase MbtB (phenyloxazoline synthetase) compare
Rv0280 -0.7 -4.7 PPE family protein PPE3 compare
Rv0392c -0.7 -0.4 Probable membrane NADH dehydrogenase NdhA compare
Rv3803c -0.7 -3.9 Secreted MPT51/MPB51 antigen protein FbpD (MPT51/MPB51 antigen 85 complex C) (AG58C) (mycolyl transferase 85C) (fibronectin-binding protein C) (85C) compare
Rv0494 -0.7 -2.5 Probable transcriptional regulatory protein (probably GntR-family) compare
Rv2127 -0.7 -3.9 L-asparagine permease AnsP1 compare
Rv0199 -0.7 -1.6 Probable conserved membrane protein compare
Rv2154c -0.7 -1.3 FtsW-like protein FtsW compare
Rv0458 -0.7 -3.6 Probable aldehyde dehydrogenase compare
Rv0408 -0.7 -2.4 Probable phosphate acetyltransferase Pta (phosphotransacetylase) compare
Rv3073c -0.7 -0.9 Conserved hypothetical protein compare
Rv3261 -0.7 -1.2 Probable F420 biosynthesis protein FbiA compare
Rv2014 -0.7 -0.8 Transposase compare
Rv2328 -0.7 -1.7 PE family protein PE23 compare
Rv3891c -0.7 -1.6 Possible ESAT-6 like protein EsxD compare
Rv2444c -0.7 -1.5 Possible ribonuclease E Rne compare
Rv2848c -0.7 -2.2 Probable cobyrinic acid A,C-diamide synthase CobB compare
Rv0396 -0.7 -1.1 Hypothetical protein compare
Rv2919c -0.7 -1.0 Probable nitrogen regulatory protein P-II GlnB compare
Rv2733c -0.7 -0.8 Conserved hypothetical alanine, arginine-rich protein compare
Rv2897c -0.7 -1.0 Conserved hypothetical protein compare
Rv2949c -0.7 -0.8 Chorismate pyruvate lyase compare
Rv3693 -0.7 -1.0 Possible conserved membrane protein compare
Rv1127c -0.7 -0.8 Probable pyruvate, phosphate dikinase PpdK compare
Rv2224c -0.6 -4.8 Probable carboxylesterase CaeA compare
Rv3720 -0.6 -2.6 Possible fatty acid synthase compare
Rv1021 -0.6 -1.4 Conserved protein compare
Rv3559c -0.6 -0.4 Probable oxidoreductase compare
Rv0050 -0.6 -1.1 Probable bifunctional penicillin-binding protein 1A/1B PonA1 (murein polymerase) (PBP1): penicillin-insensitive transglycosylase (peptidoglycan TGASE) + penicillin-sensitive transpeptidase (DD-transpeptidase) compare
Rv2268c -0.6 -1.6 Probable cytochrome P450 128 Cyp128 compare
Rv3182 -0.6 -0.5 Conserved hypothetical protein compare
Rv3536c -0.6 -3.0 Probable hydratase compare
Rv2588c -0.6 -1.1 Probable conserved membrane protein secretion factor YajC compare
Rv3152 -0.6 -3.3 Probable NADH dehydrogenase I (chain H) NuoH (NADH-ubiquinone oxidoreductase chain H) compare
Rv2331A -0.6 -0.5 Hypothetical protein compare
Rv3208A -0.6 -0.5 Conserved protein TB9.4 compare
Rv3140 -0.6 -2.4 Probable acyl-CoA dehydrogenase FadE23 compare
Rv3759c -0.6 -1.4 Possible osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein ProX compare
Rv3897c -0.6 -0.4 Conserved hypothetical protein compare
Rv3200c -0.6 -1.8 Possible transmembrane cation transporter compare
Rv3156 -0.6 -2.5 Probable NADH dehydrogenase I (chain L) NuoL (NADH-ubiquinone oxidoreductase chain L) compare
Rv3335c -0.6 -1.1 Probable conserved integral membrane protein compare
Rv1139c -0.6 -2.3 Conserved hypothetical membrane protein compare
Rv1455 -0.6 -4.2 Conserved protein compare
Rv3874 -0.6 -0.3 10 kDa culture filtrate antigen EsxB (LHP) (CFP10) compare
Rv3642c -0.6 -0.8 Hypothetical protein compare
Rv2437 -0.6 -1.3 Conserved transmembrane protein compare
Rv1059 -0.6 -0.8 Conserved protein compare
Rv1044 -0.6 -1.2 Conserved hypothetical protein compare
Rv2975c -0.6 -0.4 Conserved hypothetical protein compare
Rv2722 -0.6 -1.4 Conserved hypothetical protein compare
Rv1106c -0.6 -3.2 3-beta-hydroxysteroid dehydrogenase compare
Rv3272 -0.6 -3.3 Conserved hypothetical protein compare
Rv0765c -0.6 -1.0 Probable oxidoreductase compare
Rv1176c -0.6 -2.3 Conserved hypothetical protein compare
Rv2208 -0.6 -1.6 Probable cobalamin 5'-phosphate synthase CobS compare
Rv2679 -0.6 -1.2 Probable enoyl-CoA hydratase EchA15 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) compare
Rv2866 -0.6 -2.1 Toxin RelG compare
Rv2671 -0.6 -1.7 Possible bifunctional enzyme riboflavin biosynthesis protein RibD: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) compare
Rv0019c -0.6 -1.9 Conserved protein with FHA domain, FhaB compare
Rv2632c -0.6 -0.5 Conserved protein compare
Rv0311 -0.6 -1.0 Unknown protein compare
Rv2721c -0.6 -3.4 Possible conserved transmembrane alanine and glycine rich protein compare
Rv1715 -0.6 -1.9 Probable 3-hydroxybutyryl-CoA dehydrogenase FadB3 (beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) compare
Rv3145 -0.6 -2.1 Probable NADH dehydrogenase I (chain A) NuoA (NADH-ubiquinone oxidoreductase chain A) compare
Rv2668 -0.6 -1.6 Possible exported alanine and valine rich protein compare
Rv2624c -0.6 -0.4 Universal stress protein family protein compare
Rv0381c -0.6 -3.1 Hypothetical protein compare
Rv2717c -0.6 -2.1 Conserved protein compare
Rv2564 -0.6 -2.4 Probable glutamine-transport ATP-binding protein ABC transporter GlnQ compare
Rv0905 -0.6 -1.3 Possible enoyl-CoA hydratase EchA6 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) compare
Rv1657 -0.6 -1.5 Probable arginine repressor ArgR (AHRC) compare
Rv2618 -0.6 -2.0 Conserved hypothetical protein compare
Rv3158 -0.6 -3.0 Probable NADH dehydrogenase I (chain N) NuoN (NADH-ubiquinone oxidoreductase chain N) compare
Rv1013 -0.6 -2.9 Putative polyketide synthase Pks16 compare
Rv0037c -0.6 -3.6 Probable conserved integral membrane protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source cholesterol in Mycobacterium tuberculosis H37Rv

For carbon source cholesterol across organisms