Experiment set5S570 for Enterobacter sp. TBS_079

Compare to:

M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030

200 most important genes:

  gene name fitness t score description  
MPMX20_03986 -4.6 -3.2 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_02591 -4.2 -2.9 DNA-binding protein H-NS compare
MPMX20_00831 -4.2 -4.1 RNA polymerase-binding transcription factor DksA compare
MPMX20_04768 -3.8 -2.6 hypothetical protein compare
MPMX20_04443 -3.6 -2.5 Sec-independent protein translocase protein TatB compare
MPMX20_04489 -3.6 -15.4 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_00136 -3.5 -1.3 hypothetical protein compare
MPMX20_03211 -3.3 -2.3 NADH-quinone oxidoreductase subunit I compare
MPMX20_03020 -3.2 -8.9 hypothetical protein compare
MPMX20_03019 -3.2 -11.4 hypothetical protein compare
MPMX20_00110 -3.2 -15.5 hypothetical protein compare
MPMX20_01334 -3.2 -7.4 Phosphoglucomutase compare
MPMX20_01357 -3.0 -5.0 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04444 -3.0 -1.6 Sec-independent protein translocase protein TatA compare
MPMX20_03017 -2.9 -13.0 hypothetical protein compare
MPMX20_00105 -2.9 -13.2 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_01370 -2.9 -2.8 Peptidoglycan-associated lipoprotein compare
MPMX20_00108 -2.9 -17.2 hypothetical protein compare
MPMX20_01368 -2.9 -2.0 hypothetical protein compare
MPMX20_04375 -2.8 -6.8 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_00109 -2.8 -17.5 hypothetical protein compare
MPMX20_04530 -2.8 -10.6 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_04442 -2.8 -1.9 Sec-independent protein translocase protein TatC compare
MPMX20_03209 -2.7 -1.9 NADH-quinone oxidoreductase subunit K compare
MPMX20_03016 -2.7 -19.2 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_02020 -2.7 -12.9 Mannose-6-phosphate isomerase compare
MPMX20_03015 -2.7 -20.2 Phosphoglucosamine mutase compare
MPMX20_01352 -2.7 -6.1 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_03018 -2.6 -3.6 hypothetical protein compare
MPMX20_01350 -2.6 -3.5 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_04133 -2.6 -6.7 Stringent starvation protein A compare
MPMX20_01972 -2.6 -1.3 tRNA-Val compare
MPMX20_01367 -2.5 -2.5 Tol-Pal system protein TolR compare
MPMX20_04440 -2.5 -1.7 Transcription antitermination protein RfaH compare
MPMX20_04639 -2.5 -1.5 Phosphate-binding protein PstS compare
MPMX20_02768 -2.4 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_04374 -2.4 -3.5 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_03210 -2.4 -3.2 NADH-quinone oxidoreductase subunit J compare
MPMX20_04650 -2.4 -1.6 tRNA modification GTPase MnmE compare
MPMX20_01366 -2.4 -1.6 Tol-Pal system protein TolQ compare
MPMX20_01356 -2.3 -6.4 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_03021 -2.3 -5.6 hypothetical protein compare
MPMX20_02896 -2.3 -12.4 Lysozyme RrrD compare
MPMX20_02929 -2.3 -3.0 hypothetical protein compare
MPMX20_02879 -2.3 -2.7 hypothetical protein compare
MPMX20_03215 -2.3 -1.6 NADH-quinone oxidoreductase subunit E compare
MPMX20_03213 -2.3 -4.6 NADH-quinone oxidoreductase subunit G compare
MPMX20_01019 -2.2 -5.4 Protoheme IX farnesyltransferase compare
MPMX20_04518 -2.2 -3.6 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_00998 -2.2 -2.9 Sec translocon accessory complex subunit YajC compare
MPMX20_01351 -2.2 -3.3 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_01369 -2.1 -3.8 Tol-Pal system protein TolB compare
MPMX20_02920 -2.1 -8.4 hypothetical protein compare
MPMX20_03206 -2.1 -4.1 NADH-quinone oxidoreductase subunit N compare
MPMX20_01021 -2.1 -3.5 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_01950 -2.1 -2.5 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03490 -2.1 -3.7 SsrA-binding protein compare
MPMX20_02919 -2.1 -5.4 hypothetical protein compare
MPMX20_03390 -2.0 -5.1 Outer membrane protein assembly factor BamB compare
MPMX20_03385 -2.0 -4.1 hypothetical protein compare
MPMX20_04626 -2.0 -1.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_04141 -1.9 -4.4 Arginine repressor compare
MPMX20_04466 -1.9 -3.5 hypothetical protein compare
MPMX20_02147 -1.9 -5.9 2,3-dehydroadipyl-CoA hydratase compare
MPMX20_04377 -1.9 -8.6 putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD compare
MPMX20_03212 -1.9 -3.2 NADH-quinone oxidoreductase subunit H compare
MPMX20_01869 -1.9 -6.2 Succinylglutamate desuccinylase compare
MPMX20_01355 -1.9 -0.7 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_00419 -1.9 -7.3 Aspartate ammonia-lyase compare
MPMX20_03154 -1.9 -6.8 Inner membrane protein YejM compare
MPMX20_01607 -1.8 -3.7 Outer membrane protein A compare
MPMX20_03290 -1.8 -1.3 tRNA-Ala compare
MPMX20_01765 -1.8 -3.1 Ribonuclease E compare
MPMX20_02895 -1.8 -7.1 hypothetical protein compare
MPMX20_04460 -1.8 -4.9 hypothetical protein compare
MPMX20_03207 -1.8 -3.0 NADH-quinone oxidoreductase subunit M compare
MPMX20_04483 -1.8 -1.2 Lipid III flippase compare
MPMX20_03814 -1.8 -2.3 hypothetical protein compare
MPMX20_04730 -1.8 -4.9 hypothetical protein compare
MPMX20_03753 -1.8 -3.8 Tyrosine recombinase XerD compare
MPMX20_02672 -1.8 -10.3 hypothetical protein compare
MPMX20_00630 -1.8 -2.5 hypothetical protein compare
MPMX20_03216 -1.8 -6.4 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_01353 -1.7 -3.4 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_02997 -1.7 -5.9 Exodeoxyribonuclease I compare
MPMX20_02887 -1.7 -4.5 hypothetical protein compare
MPMX20_03214 -1.7 -4.6 NADH-quinone oxidoreductase subunit F compare
MPMX20_03208 -1.7 -4.0 NADH-quinone oxidoreductase subunit L compare
MPMX20_04301 -1.7 -2.0 Fe/S biogenesis protein NfuA compare
MPMX20_04731 -1.7 -5.7 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_02882 -1.7 -7.8 hypothetical protein compare
MPMX20_00106 -1.7 -1.6 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_02767 -1.7 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_02899 -1.7 -4.9 hypothetical protein compare
MPMX20_03234 -1.7 -3.2 putative Nudix hydrolase YfcD compare
MPMX20_00773 -1.6 -5.3 Catabolite repressor/activator compare
MPMX20_03742 -1.6 -4.2 HTH-type transcriptional regulator GalR compare
MPMX20_03364 -1.6 -2.3 hypothetical protein compare
MPMX20_02861 -1.6 -8.4 hypothetical protein compare
MPMX20_00455 -1.6 -7.6 Modulator of FtsH protease HflK compare
MPMX20_02876 -1.6 -6.2 hypothetical protein compare
MPMX20_02902 -1.6 -7.4 Serine/threonine-protein phosphatase 1 compare
MPMX20_01542 -1.6 -2.5 Cold shock-like protein CspD compare
MPMX20_03022 -1.6 -1.1 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03396 -1.6 -4.1 Nucleoside diphosphate kinase compare
MPMX20_01865 -1.6 -8.0 Succinylornithine transaminase compare
MPMX20_00241 -1.6 -5.5 Glucose-6-phosphate isomerase compare
MPMX20_03153 -1.6 -1.6 hypothetical protein compare
MPMX20_03509 -1.6 -1.4 hypothetical protein compare
MPMX20_00747 -1.6 -2.8 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_02927 -1.5 -4.8 hypothetical protein compare
MPMX20_04306 -1.5 -3.8 Glycerol-3-phosphate regulon repressor compare
MPMX20_01022 -1.5 -6.7 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_02576 -1.5 -2.0 Protein TonB compare
MPMX20_00480 -1.5 -1.9 50S ribosomal protein L9 compare
MPMX20_04110 -1.5 -2.9 Nitrogen regulatory protein compare
MPMX20_02898 -1.5 -7.9 hypothetical protein compare
MPMX20_02871 -1.5 -5.7 hypothetical protein compare
MPMX20_02917 -1.5 -2.6 hypothetical protein compare
MPMX20_04463 -1.5 -3.7 DNA helicase II compare
MPMX20_02869 -1.5 -11.6 hypothetical protein compare
MPMX20_02888 -1.4 -4.7 hypothetical protein compare
MPMX20_03285 -1.4 -0.9 hypothetical protein compare
MPMX20_03090 -1.4 -1.0 Methionine--tRNA ligase compare
MPMX20_04465 -1.4 -2.9 Tyrosine recombinase XerC compare
MPMX20_04366 -1.4 -2.7 Outer-membrane lipoprotein carrier protein compare
MPMX20_04038 -1.4 -3.7 Glucitol operon repressor compare
MPMX20_03301 -1.4 -1.7 hypothetical protein compare
MPMX20_01552 -1.4 -1.0 hypothetical protein compare
MPMX20_02877 -1.4 -5.9 hypothetical protein compare
MPMX20_04111 -1.4 -3.6 RNase adapter protein RapZ compare
MPMX20_02894 -1.4 -2.9 hypothetical protein compare
MPMX20_03217 -1.4 -2.6 NADH-quinone oxidoreductase subunit B compare
MPMX20_04467 -1.4 -4.7 Diaminopimelate epimerase compare
MPMX20_00693 -1.4 -5.8 Phosphoserine phosphatase compare
MPMX20_03440 -1.4 -1.9 Elongation factor 4 compare
MPMX20_00514 -1.4 -2.4 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_02881 -1.4 -2.0 hypothetical protein compare
MPMX20_02870 -1.4 -9.5 hypothetical protein compare
MPMX20_02901 -1.4 -7.3 hypothetical protein compare
MPMX20_01023 -1.4 -8.4 Cytochrome bo(3) ubiquinol oxidase subunit 2 compare
MPMX20_00111 -1.3 -8.1 hypothetical protein compare
MPMX20_02903 -1.3 -2.4 hypothetical protein compare
MPMX20_04243 -1.3 -1.0 hypothetical protein compare
MPMX20_01156 -1.3 -2.2 hypothetical protein compare
MPMX20_02010 -1.3 -4.4 Ion-translocating oxidoreductase complex subunit B compare
MPMX20_03047 -1.3 -2.9 dCTP deaminase compare
MPMX20_02884 -1.3 -8.9 hypothetical protein compare
MPMX20_02878 -1.3 -6.3 hypothetical protein compare
MPMX20_02908 -1.3 -6.0 hypothetical protein compare
MPMX20_02766 -1.3 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02593 -1.3 -6.9 Regulator of RpoS compare
MPMX20_00570 -1.3 -8.2 putative BsuMI modification methylase subunit YdiO compare
MPMX20_00456 -1.3 -4.3 Modulator of FtsH protease HflC compare
MPMX20_03308 -1.3 -3.0 Cysteine synthase A compare
MPMX20_02892 -1.3 -5.6 hypothetical protein compare
MPMX20_03409 -1.3 -1.5 Iron-binding protein IscA compare
MPMX20_04140 -1.3 -2.8 Malate dehydrogenase compare
MPMX20_03770 -1.3 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
MPMX20_02227 -1.2 -6.6 hypothetical protein compare
MPMX20_01446 -1.2 -1.8 Small protein MntS compare
MPMX20_02149 -1.2 -4.1 3-hydroxyadipyl-CoA dehydrogenase compare
MPMX20_02891 -1.2 -6.5 hypothetical protein compare
MPMX20_04485 -1.2 -4.3 dTDP-fucosamine acetyltransferase compare
MPMX20_00102 -1.2 -1.2 hypothetical protein compare
MPMX20_02137 -1.2 -5.0 Phenylacetaldehyde dehydrogenase compare
MPMX20_04480 -1.2 -4.1 UDP-N-acetyl-D-mannosaminuronic acid transferase compare
MPMX20_00453 -1.2 -1.2 RNA-binding protein Hfq compare
MPMX20_03132 -1.2 -4.0 Tagatose-6-phosphate kinase compare
MPMX20_01333 -1.2 -3.4 Negative modulator of initiation of replication compare
MPMX20_02890 -1.2 -5.3 hypothetical protein compare
MPMX20_04119 -1.2 -0.8 DNA polymerase III subunit chi compare
MPMX20_00749 -1.2 -2.5 Chaperone SurA compare
MPMX20_04601 -1.2 -1.6 DNA polymerase I compare
MPMX20_02880 -1.2 -7.5 hypothetical protein compare
MPMX20_04484 -1.2 -3.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
MPMX20_02863 -1.2 -7.2 hypothetical protein compare
MPMX20_02909 -1.2 -4.2 hypothetical protein compare
MPMX20_02905 -1.1 -5.3 hypothetical protein compare
MPMX20_02873 -1.1 -4.0 hypothetical protein compare
MPMX20_02875 -1.1 -7.0 hypothetical protein compare
MPMX20_02925 -1.1 -7.8 hypothetical protein compare
MPMX20_02906 -1.1 -4.2 hypothetical protein compare
MPMX20_02867 -1.1 -6.0 hypothetical protein compare
MPMX20_02866 -1.1 -7.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
MPMX20_02918 -1.1 -3.2 hypothetical protein compare
MPMX20_02141 -1.1 -5.6 Bifunctional protein PaaZ compare
MPMX20_02931 -1.1 -4.4 hypothetical protein compare
MPMX20_03407 -1.1 -1.3 Chaperone protein HscA compare
MPMX20_02930 -1.1 -3.9 hypothetical protein compare
MPMX20_04279 -1.1 -1.8 Shikimate kinase 1 compare
MPMX20_02874 -1.1 -7.8 hypothetical protein compare
MPMX20_02472 -1.1 -2.8 Phage shock protein A compare
MPMX20_03767 -1.1 -2.3 Xaa-Pro aminopeptidase compare
MPMX20_02916 -1.1 -3.8 hypothetical protein compare
MPMX20_01942 -1.1 -3.0 HTH-type transcriptional repressor BluR compare
MPMX20_02021 -1.1 -4.4 Fumarate hydratase class I, aerobic compare
MPMX20_03850 -1.1 -2.1 Biopolymer transport protein ExbD compare
MPMX20_01097 -1.1 -3.6 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_02886 -1.1 -2.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Microbacterium atlanticum SAI_030 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms