Experiment set5S569 for Enterobacter sp. TBS_079

Compare to:

1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030

200 most important genes:

  gene name fitness t score description  
MPMX20_03986 -4.5 -3.1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_02591 -4.0 -2.8 DNA-binding protein H-NS compare
MPMX20_04768 -3.7 -3.6 hypothetical protein compare
MPMX20_04443 -3.4 -2.4 Sec-independent protein translocase protein TatB compare
MPMX20_04489 -3.3 -15.0 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_01357 -3.2 -4.8 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03020 -3.0 -8.3 hypothetical protein compare
MPMX20_03017 -3.0 -12.6 hypothetical protein compare
MPMX20_00109 -3.0 -16.8 hypothetical protein compare
MPMX20_00105 -3.0 -15.2 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_03019 -2.9 -11.2 hypothetical protein compare
MPMX20_00110 -2.9 -15.3 hypothetical protein compare
MPMX20_02020 -2.9 -11.2 Mannose-6-phosphate isomerase compare
MPMX20_01958 -2.8 -1.1 Fumarase D compare
MPMX20_00108 -2.8 -15.7 hypothetical protein compare
MPMX20_01356 -2.7 -5.5 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_00998 -2.6 -2.5 Sec translocon accessory complex subunit YajC compare
MPMX20_03018 -2.6 -3.1 hypothetical protein compare
MPMX20_04530 -2.6 -12.3 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_02926 -2.5 -5.9 hypothetical protein compare
MPMX20_03385 -2.5 -3.9 hypothetical protein compare
MPMX20_03015 -2.5 -16.4 Phosphoglucosamine mutase compare
MPMX20_00831 -2.5 -4.4 RNA polymerase-binding transcription factor DksA compare
MPMX20_01972 -2.4 -1.3 tRNA-Val compare
MPMX20_02696 -2.4 -8.0 Murein tetrapeptide carboxypeptidase compare
MPMX20_04442 -2.4 -2.3 Sec-independent protein translocase protein TatC compare
MPMX20_03756 -2.4 -3.6 FAD assembly factor SdhE compare
MPMX20_01350 -2.4 -3.2 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_04375 -2.4 -6.8 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_03213 -2.4 -3.2 NADH-quinone oxidoreductase subunit G compare
MPMX20_01334 -2.3 -7.3 Phosphoglucomutase compare
MPMX20_04440 -2.3 -1.6 Transcription antitermination protein RfaH compare
MPMX20_03016 -2.3 -14.1 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_01370 -2.3 -2.7 Peptidoglycan-associated lipoprotein compare
MPMX20_04639 -2.2 -1.5 Phosphate-binding protein PstS compare
MPMX20_01353 -2.2 -3.7 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_03850 -2.2 -3.4 Biopolymer transport protein ExbD compare
MPMX20_03212 -2.2 -3.0 NADH-quinone oxidoreductase subunit H compare
MPMX20_04518 -2.2 -3.0 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_04444 -2.1 -1.6 Sec-independent protein translocase protein TatA compare
MPMX20_01020 -2.1 -1.6 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_04133 -2.1 -5.9 Stringent starvation protein A compare
MPMX20_01607 -2.1 -3.7 Outer membrane protein A compare
MPMX20_01367 -2.1 -2.9 Tol-Pal system protein TolR compare
MPMX20_02896 -2.1 -11.9 Lysozyme RrrD compare
MPMX20_00197 -2.1 -1.3 tRNA-Tyr compare
MPMX20_02997 -2.1 -5.0 Exodeoxyribonuclease I compare
MPMX20_04141 -2.1 -4.4 Arginine repressor compare
MPMX20_02895 -2.1 -8.8 hypothetical protein compare
MPMX20_01366 -2.1 -1.4 Tol-Pal system protein TolQ compare
MPMX20_02767 -2.1 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03209 -2.0 -2.0 NADH-quinone oxidoreductase subunit K compare
MPMX20_04465 -2.0 -2.4 Tyrosine recombinase XerC compare
MPMX20_04140 -2.0 -3.9 Malate dehydrogenase compare
MPMX20_00241 -2.0 -5.0 Glucose-6-phosphate isomerase compare
MPMX20_03267 -2.0 -2.3 Phosphohistidine phosphatase SixA compare
MPMX20_04730 -2.0 -3.2 hypothetical protein compare
MPMX20_01352 -2.0 -5.4 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_01369 -2.0 -3.0 Tol-Pal system protein TolB compare
MPMX20_01351 -2.0 -2.7 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_02576 -2.0 -1.3 Protein TonB compare
MPMX20_01368 -1.9 -2.6 hypothetical protein compare
MPMX20_04532 -1.9 -1.8 Met repressor compare
MPMX20_03216 -1.9 -6.1 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_01950 -1.9 -2.3 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03217 -1.9 -2.6 NADH-quinone oxidoreductase subunit B compare
MPMX20_03206 -1.9 -4.0 NADH-quinone oxidoreductase subunit N compare
MPMX20_04028 -1.9 -2.1 hypothetical protein compare
MPMX20_04466 -1.8 -3.9 hypothetical protein compare
MPMX20_00419 -1.8 -6.7 Aspartate ammonia-lyase compare
MPMX20_04306 -1.8 -4.0 Glycerol-3-phosphate regulon repressor compare
MPMX20_02147 -1.8 -5.4 2,3-dehydroadipyl-CoA hydratase compare
MPMX20_03207 -1.8 -2.7 NADH-quinone oxidoreductase subunit M compare
MPMX20_00899 -1.8 -1.2 Ribonuclease HI compare
MPMX20_03753 -1.8 -3.2 Tyrosine recombinase XerD compare
MPMX20_03021 -1.8 -5.5 hypothetical protein compare
MPMX20_02672 -1.7 -9.2 hypothetical protein compare
MPMX20_00773 -1.7 -5.3 Catabolite repressor/activator compare
MPMX20_02768 -1.7 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_01022 -1.7 -7.1 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_01837 -1.7 -2.3 hypothetical protein compare
MPMX20_03208 -1.7 -3.4 NADH-quinone oxidoreductase subunit L compare
MPMX20_01355 -1.7 -0.6 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03396 -1.7 -4.0 Nucleoside diphosphate kinase compare
MPMX20_01765 -1.7 -3.1 Ribonuclease E compare
MPMX20_02907 -1.7 -7.8 hypothetical protein compare
MPMX20_02869 -1.6 -12.2 hypothetical protein compare
MPMX20_02920 -1.6 -5.4 hypothetical protein compare
MPMX20_03215 -1.6 -1.6 NADH-quinone oxidoreductase subunit E compare
MPMX20_02882 -1.6 -7.7 hypothetical protein compare
MPMX20_04460 -1.6 -4.7 hypothetical protein compare
MPMX20_01019 -1.6 -4.4 Protoheme IX farnesyltransferase compare
MPMX20_04650 -1.6 -2.4 tRNA modification GTPase MnmE compare
MPMX20_01068 -1.5 -3.1 hypothetical protein compare
MPMX20_03210 -1.5 -2.9 NADH-quinone oxidoreductase subunit J compare
MPMX20_02707 -1.5 -2.0 Septum site-determining protein MinC compare
MPMX20_00728 -1.5 -1.1 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase compare
MPMX20_00106 -1.5 -1.1 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_01869 -1.5 -5.0 Succinylglutamate desuccinylase compare
MPMX20_02901 -1.5 -8.3 hypothetical protein compare
MPMX20_02143 -1.5 -2.6 1,2-phenylacetyl-CoA epoxidase, subunit B compare
MPMX20_02872 -1.5 -5.7 hypothetical protein compare
MPMX20_03211 -1.5 -2.4 NADH-quinone oxidoreductase subunit I compare
MPMX20_03629 -1.5 -2.6 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_02878 -1.5 -6.8 hypothetical protein compare
MPMX20_04483 -1.5 -1.4 Lipid III flippase compare
MPMX20_01023 -1.4 -8.6 Cytochrome bo(3) ubiquinol oxidase subunit 2 compare
MPMX20_02880 -1.4 -10.1 hypothetical protein compare
MPMX20_00570 -1.4 -8.3 putative BsuMI modification methylase subunit YdiO compare
MPMX20_02879 -1.4 -3.5 hypothetical protein compare
MPMX20_00693 -1.4 -5.2 Phosphoserine phosphatase compare
MPMX20_02877 -1.4 -6.8 hypothetical protein compare
MPMX20_03405 -1.4 -1.4 Protein IscX compare
MPMX20_03218 -1.4 -1.4 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_02919 -1.4 -3.4 hypothetical protein compare
MPMX20_03153 -1.4 -1.5 hypothetical protein compare
MPMX20_01866 -1.4 -2.2 Arginine N-succinyltransferase compare
MPMX20_00455 -1.4 -7.0 Modulator of FtsH protease HflK compare
MPMX20_04626 -1.4 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_03154 -1.4 -4.2 Inner membrane protein YejM compare
MPMX20_03022 -1.4 -0.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_02930 -1.4 -7.6 hypothetical protein compare
MPMX20_02898 -1.4 -8.0 hypothetical protein compare
MPMX20_02929 -1.4 -2.0 hypothetical protein compare
MPMX20_03285 -1.3 -0.9 hypothetical protein compare
MPMX20_04692 -1.3 -1.2 hypothetical protein compare
MPMX20_02891 -1.3 -7.9 hypothetical protein compare
MPMX20_04377 -1.3 -5.5 putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD compare
MPMX20_01349 -1.3 -3.1 Citrate synthase compare
MPMX20_02701 -1.3 -0.9 Fatty acid metabolism regulator protein compare
MPMX20_02472 -1.3 -4.2 Phage shock protein A compare
MPMX20_02883 -1.3 -4.2 hypothetical protein compare
MPMX20_02887 -1.3 -2.3 hypothetical protein compare
MPMX20_02875 -1.3 -7.5 hypothetical protein compare
MPMX20_01865 -1.3 -6.2 Succinylornithine transaminase compare
MPMX20_02884 -1.3 -7.5 hypothetical protein compare
MPMX20_02888 -1.3 -6.5 hypothetical protein compare
MPMX20_02873 -1.3 -6.5 hypothetical protein compare
MPMX20_02141 -1.3 -5.6 Bifunctional protein PaaZ compare
MPMX20_02903 -1.3 -2.6 hypothetical protein compare
MPMX20_00102 -1.3 -0.9 hypothetical protein compare
MPMX20_02931 -1.3 -5.3 hypothetical protein compare
MPMX20_03202 -1.3 -2.6 Protein ElaB compare
MPMX20_02860 -1.3 -4.4 hypothetical protein compare
MPMX20_01322 -1.3 -4.0 N-acetylglucosamine repressor compare
MPMX20_00873 -1.3 -2.0 Protein rof compare
MPMX20_02861 -1.3 -7.2 hypothetical protein compare
MPMX20_01867 -1.2 -4.2 N-succinylglutamate 5-semialdehyde dehydrogenase compare
MPMX20_02902 -1.2 -6.5 Serine/threonine-protein phosphatase 1 compare
MPMX20_03225 -1.2 -4.0 hypothetical protein compare
MPMX20_00111 -1.2 -7.2 hypothetical protein compare
MPMX20_02867 -1.2 -6.2 hypothetical protein compare
MPMX20_04137 -1.2 -2.9 Inner membrane protein YhcB compare
MPMX20_02864 -1.2 -3.6 hypothetical protein compare
MPMX20_00749 -1.2 -2.3 Chaperone SurA compare
MPMX20_02137 -1.2 -5.8 Phenylacetaldehyde dehydrogenase compare
MPMX20_04110 -1.2 -2.4 Nitrogen regulatory protein compare
MPMX20_04301 -1.2 -1.6 Fe/S biogenesis protein NfuA compare
MPMX20_01868 -1.2 -6.4 N-succinylarginine dihydrolase compare
MPMX20_01478 -1.2 -4.0 Deoxyribose operon repressor compare
MPMX20_02890 -1.2 -6.4 hypothetical protein compare
MPMX20_04111 -1.2 -3.3 RNase adapter protein RapZ compare
MPMX20_02908 -1.2 -5.4 hypothetical protein compare
MPMX20_02862 -1.2 -6.7 hypothetical protein compare
MPMX20_02904 -1.2 -6.8 hypothetical protein compare
MPMX20_02144 -1.2 -4.2 1,2-phenylacetyl-CoA epoxidase, subunit C compare
MPMX20_02874 -1.2 -9.2 hypothetical protein compare
MPMX20_03234 -1.2 -2.5 putative Nudix hydrolase YfcD compare
MPMX20_02870 -1.2 -7.6 hypothetical protein compare
MPMX20_02737 -1.1 -7.3 Tail-specific protease compare
MPMX20_02889 -1.1 -7.2 hypothetical protein compare
MPMX20_02885 -1.1 -2.8 hypothetical protein compare
MPMX20_02892 -1.1 -4.6 hypothetical protein compare
MPMX20_04601 -1.1 -1.3 DNA polymerase I compare
MPMX20_02886 -1.1 -5.5 hypothetical protein compare
MPMX20_03260 -1.1 -1.8 hypothetical protein compare
MPMX20_00388 -1.1 -0.6 hypothetical protein compare
MPMX20_02866 -1.1 -6.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
MPMX20_03132 -1.1 -3.7 Tagatose-6-phosphate kinase compare
MPMX20_04463 -1.1 -3.2 DNA helicase II compare
MPMX20_02905 -1.1 -5.6 hypothetical protein compare
MPMX20_02593 -1.1 -6.3 Regulator of RpoS compare
MPMX20_03338 -1.1 -2.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_03902 -1.1 -1.1 Urease accessory protein UreE compare
MPMX20_02863 -1.1 -6.9 hypothetical protein compare
MPMX20_02766 -1.1 -1.0 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02915 -1.1 -5.2 hypothetical protein compare
MPMX20_03090 -1.1 -0.7 Methionine--tRNA ligase compare
MPMX20_02916 -1.1 -2.9 hypothetical protein compare
MPMX20_02928 -1.1 -3.2 hypothetical protein compare
MPMX20_03488 -1.1 -2.1 Persistence and stress-resistance antitoxin PasI compare
MPMX20_02868 -1.1 -5.5 Protein UmuD compare
MPMX20_02881 -1.1 -2.5 hypothetical protein compare
MPMX20_04057 -1.0 -2.7 Protein/nucleic acid deglycase 2 compare
MPMX20_03407 -1.0 -1.0 Chaperone protein HscA compare
MPMX20_04731 -1.0 -3.1 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_01552 -1.0 -1.2 hypothetical protein compare
MPMX20_02899 -1.0 -1.8 hypothetical protein compare
MPMX20_00456 -1.0 -4.0 Modulator of FtsH protease HflC compare
MPMX20_01914 -1.0 -2.4 Hemin import ATP-binding protein HmuV compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Microbacterium atlanticum SAI_030 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms