Experiment set5S55 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -6.7 -3.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS10850 -6.3 -7.5 glycosyltransferase family 2 protein compare
HMPREF1058_RS09585 -6.2 -6.1 argininosuccinate lyase compare
HMPREF1058_RS11825 -6.2 -3.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS08540 -6.1 -4.2 anaerobic sulfatase-maturation protein compare
HMPREF1058_RS12115 -6.0 -10.7 acetylglutamate kinase compare
HMPREF1058_RS14610 -5.9 -4.1 adenylosuccinate synthase compare
HMPREF1058_RS15075 -5.8 -4.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS09180 -5.8 -4.0 hypothetical protein compare
HMPREF1058_RS11040 -5.7 -4.0 polysaccharide deacetylase family protein compare
HMPREF1058_RS10710 -5.7 -12.2 DUF3108 domain-containing protein compare
HMPREF1058_RS12780 -5.5 -8.4 M20 family metallo-hydrolase compare
HMPREF1058_RS02405 -5.5 -18.1 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS02410 -5.5 -13.2 methylmalonyl-CoA mutase compare
HMPREF1058_RS09745 -5.4 -5.3 glycosyltransferase compare
HMPREF1058_RS07720 -5.4 -3.7 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS09685 -5.2 -6.2 tetratricopeptide repeat protein compare
HMPREF1058_RS09620 -5.2 -3.5 hypothetical protein compare
HMPREF1058_RS10995 -5.2 -3.6 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS08840 -5.2 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS08640 -5.1 -2.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07955 -5.1 -3.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS02975 -5.0 -1.8 hypothetical protein compare
HMPREF1058_RS13655 -4.9 -10.0 cardiolipin synthase compare
HMPREF1058_RS11880 -4.9 -23.1 hypothetical protein compare
HMPREF1058_RS08025 -4.9 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS02150 -4.8 -3.3 DUF3440 domain-containing protein compare
HMPREF1058_RS08850 -4.8 -10.2 N-acetyltransferase compare
HMPREF1058_RS16625 -4.8 -3.3 hypothetical protein compare
HMPREF1058_RS07695 -4.7 -3.2 DUF4827 domain-containing protein compare
HMPREF1058_RS00215 -4.7 -8.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS03000 -4.7 -3.2 IMP dehydrogenase compare
HMPREF1058_RS02155 -4.7 -3.2 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS13910 -4.6 -3.2 nucleoside deaminase compare
HMPREF1058_RS16620 -4.6 -3.2 GGGtGRT protein compare
HMPREF1058_RS07380 -4.6 -11.1 GH92 family glycosyl hydrolase compare
HMPREF1058_RS02485 -4.6 -4.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS07420 -4.6 -7.7 exo-alpha-sialidase compare
HMPREF1058_RS08845 -4.6 -10.1 argininosuccinate synthase compare
HMPREF1058_RS03210 -4.6 -4.4 alpha-glucan family phosphorylase compare
HMPREF1058_RS11875 -4.6 -14.1 hypothetical protein compare
HMPREF1058_RS15565 -4.5 -19.4 hypothetical protein compare
HMPREF1058_RS17150 -4.5 -14.0 S41 family peptidase compare
HMPREF1058_RS08875 -4.4 -12.3 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS09185 -4.4 -3.0 DUF4252 domain-containing protein compare
HMPREF1058_RS06320 -4.4 -3.0 electron transport complex subunit RsxA compare
HMPREF1058_RS14490 -4.4 -3.0 S9 family peptidase compare
HMPREF1058_RS15435 -4.4 -3.0 hypothetical protein compare
HMPREF1058_RS10080 -4.4 -16.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS06085 -4.4 -9.3 hypothetical protein compare
HMPREF1058_RS02140 -4.3 -10.4 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS16490 -4.3 -7.2 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS17930 -4.3 -5.1 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS03205 -4.3 -10.0 glycogen/starch synthase compare
HMPREF1058_RS00590 -4.3 -2.9 hypothetical protein compare
HMPREF1058_RS04375 -4.2 -2.9 carbon-nitrogen hydrolase compare
HMPREF1058_RS10840 -4.2 -2.3 hypothetical protein compare
HMPREF1058_RS16760 -4.2 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS16505 -4.2 -2.9 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS04065 -4.2 -2.0 VWA domain-containing protein compare
HMPREF1058_RS10075 -4.1 -15.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS08520 -4.1 -4.6 DUF59 domain-containing protein compare
HMPREF1058_RS10270 -4.1 -4.3 hypothetical protein compare
HMPREF1058_RS06195 -4.1 -2.8 diaminopimelate decarboxylase compare
HMPREF1058_RS00700 -4.1 -10.0 DUF4831 family protein compare
HMPREF1058_RS11490 -4.1 -2.8 redox-regulated ATPase YchF compare
HMPREF1058_RS07675 -4.1 -6.8 elongation factor G compare
HMPREF1058_RS09485 -4.0 -17.8 PDZ domain-containing protein compare
HMPREF1058_RS10835 -4.0 -3.9 UDP-galactopyranose mutase compare
HMPREF1058_RS09750 -4.0 -2.7 glycosyltransferase compare
HMPREF1058_RS14835 -4.0 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS18635 -4.0 -1.5 PepSY-like domain-containing protein compare
HMPREF1058_RS06560 -4.0 -2.7 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS07300 -4.0 -7.8 MFS transporter compare
HMPREF1058_RS01665 -4.0 -2.6 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS15660 -3.9 -15.9 galactokinase compare
HMPREF1058_RS14215 -3.9 -2.7 (d)CMP kinase compare
HMPREF1058_RS07290 -3.9 -6.9 dihydrodipicolinate synthase family protein compare
HMPREF1058_RS06380 -3.9 -6.4 copper homeostasis protein CutC compare
HMPREF1058_RS02495 -3.9 -5.9 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS11535 -3.9 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS06345 -3.9 -2.7 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06335 -3.9 -2.7 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS06835 -3.9 -8.9 alpha-amylase family protein compare
HMPREF1058_RS03105 -3.8 -4.2 ABC transporter permease compare
HMPREF1058_RS01745 -3.8 -2.6 PorT family protein compare
HMPREF1058_RS15645 -3.8 -7.1 NUDIX hydrolase compare
HMPREF1058_RS17940 -3.8 -2.6 alpha-amylase compare
HMPREF1058_RS17815 -3.8 -2.6 MFS transporter compare
HMPREF1058_RS14460 -3.8 -14.8 glycoside hydrolase family 28 protein compare
HMPREF1058_RS07040 -3.8 -12.9 tetratricopeptide repeat protein compare
HMPREF1058_RS16935 -3.7 -10.9 hypothetical protein compare
HMPREF1058_RS02480 -3.7 -3.6 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS18235 -3.7 -2.6 3'-5' exonuclease compare
HMPREF1058_RS06330 -3.7 -3.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS17935 -3.7 -2.6 glycosyltransferase compare
HMPREF1058_RS11310 -3.7 -2.5 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS08855 -3.7 -6.7 arginine repressor compare
HMPREF1058_RS16500 -3.6 -2.5 OadG family protein compare
HMPREF1058_RS11215 -3.6 -2.4 DUF4294 domain-containing protein compare
HMPREF1058_RS16755 -3.6 -2.4 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS05755 -3.5 -8.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS02170 -3.5 -2.4 hypothetical protein compare
HMPREF1058_RS00205 -3.5 -14.4 cation:proton antiporter compare
HMPREF1058_RS03910 -3.5 -2.4 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS10490 -3.5 -12.9 rhomboid family intramembrane serine protease compare
HMPREF1058_RS07390 -3.5 -12.2 cyclically-permuted mutarotase family protein compare
HMPREF1058_RS05780 -3.5 -7.0 PD40 domain-containing protein compare
HMPREF1058_RS07415 -3.4 -14.6 family 20 glycosylhydrolase compare
HMPREF1058_RS07635 -3.4 -2.1 50S ribosomal protein L9 compare
HMPREF1058_RS16510 -3.4 -3.9 methylmalonyl-CoA epimerase compare
HMPREF1058_RS07755 -3.4 -11.9 TolC family protein compare
HMPREF1058_RS16495 -3.4 -2.3 biotin/lipoyl-binding protein compare
HMPREF1058_RS07375 -3.4 -14.1 DUF4982 domain-containing protein compare
HMPREF1058_RS11270 -3.4 -11.7 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS17235 -3.4 -9.5 glycoside hydrolase family 88 protein compare
HMPREF1058_RS02910 -3.4 -20.1 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS04075 -3.4 -2.3 DUF58 domain-containing protein compare
HMPREF1058_RS12460 -3.4 -14.0 tetratricopeptide repeat protein compare
HMPREF1058_RS15665 -3.3 -2.3 MFS transporter compare
HMPREF1058_RS06340 -3.3 -2.3 electron transport complex subunit RsxC compare
HMPREF1058_RS14285 -3.3 -1.1 DUF5056 domain-containing protein compare
HMPREF1058_RS15915 -3.3 -2.2 OmpH family outer membrane protein compare
HMPREF1058_RS04080 -3.3 -2.2 AAA family ATPase compare
HMPREF1058_RS07725 -3.2 -7.6 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS02095 -3.2 -9.5 efflux transporter outer membrane subunit compare
HMPREF1058_RS16730 -3.2 -2.2 chorismate synthase compare
HMPREF1058_RS07750 -3.2 -18.2 efflux RND transporter permease subunit compare
HMPREF1058_RS10720 -3.2 -2.2 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS06645 -3.2 -13.6 SLBB domain-containing protein compare
HMPREF1058_RS04045 -3.2 -2.2 tetratricopeptide repeat protein compare
HMPREF1058_RS12455 -3.2 -1.9 dUTP diphosphatase compare
HMPREF1058_RS06225 -3.1 -3.0 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS08535 -3.1 -2.1 elongation factor P compare
HMPREF1058_RS01685 -3.1 -3.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS11915 -3.1 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS09735 -3.1 -8.4 hypothetical protein compare
HMPREF1058_RS14220 -3.1 -2.1 energy transducer TonB compare
HMPREF1058_RS09675 -3.1 -3.1 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS10855 -3.1 -16.9 glycosyltransferase family 2 protein compare
HMPREF1058_RS12345 -3.1 -13.3 4-alpha-glucanotransferase compare
HMPREF1058_RS14200 -3.1 -16.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS07575 -3.1 -4.5 MCE family protein compare
HMPREF1058_RS06325 -3.0 -2.1 electron transport complex subunit E compare
HMPREF1058_RS08835 -3.0 -7.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS09590 -3.0 -8.2 hypothetical protein compare
HMPREF1058_RS02125 -3.0 -9.5 PorT family protein compare
HMPREF1058_RS15520 -3.0 -2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS14035 -3.0 -1.8 hypothetical protein compare
HMPREF1058_RS13965 -3.0 -1.8 hypothetical protein compare
HMPREF1058_RS12535 -3.0 -16.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS04295 -3.0 -4.0 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06640 -2.9 -10.7 chain-length determining protein compare
HMPREF1058_RS12495 -2.9 -5.7 glycine cleavage system protein GcvH compare
HMPREF1058_RS15920 -2.9 -2.2 hypothetical protein compare
HMPREF1058_RS13970 -2.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS06190 -2.9 -2.0 aspartate kinase compare
HMPREF1058_RS04290 -2.9 -7.4 DUF1015 domain-containing protein compare
HMPREF1058_RS14005 -2.9 -3.9 3-dehydroquinate synthase compare
HMPREF1058_RS07760 -2.9 -17.5 efflux RND transporter permease subunit compare
HMPREF1058_RS11890 -2.9 -2.0 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS02120 -2.9 -12.1 PCMD domain-containing protein compare
HMPREF1058_RS21520 -2.8 -1.1 hypothetical protein compare
HMPREF1058_RS19090 -2.8 -0.7 tRNA-Phe compare
HMPREF1058_RS04025 -2.8 -1.9 hypothetical protein compare
HMPREF1058_RS07395 -2.8 -12.8 family 20 glycosylhydrolase compare
HMPREF1058_RS02105 -2.8 -10.2 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS03110 -2.8 -9.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS17130 -2.8 -1.8 tetratricopeptide repeat protein compare
HMPREF1058_RS03510 -2.8 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS04070 -2.8 -1.9 hypothetical protein compare
HMPREF1058_RS06310 -2.8 -1.9 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS18205 -2.8 -1.9 ferrous iron transport protein B compare
HMPREF1058_RS01695 -2.8 -4.1 LacI family DNA-binding transcriptional regulator compare
HMPREF1058_RS16845 -2.7 -2.6 SurA N-terminal domain-containing protein compare
HMPREF1058_RS00595 -2.7 -2.5 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS12070 -2.7 -1.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS09000 -2.7 -4.3 FecR domain-containing protein compare
HMPREF1058_RS06350 -2.7 -5.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS07655 -2.7 -0.9 hypothetical protein compare
HMPREF1058_RS06410 -2.7 -1.8 elongation factor 4 compare
HMPREF1058_RS08295 -2.7 -6.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS05790 -2.7 -1.9 hypothetical protein compare
HMPREF1058_RS02100 -2.7 -15.6 efflux RND transporter permease subunit compare
HMPREF1058_RS01800 -2.7 -1.8 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS14225 -2.6 -7.7 polyprenyl synthetase family protein compare
HMPREF1058_RS11730 -2.6 -1.2 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS00600 -2.6 -6.9 diaminopimelate dehydrogenase compare
HMPREF1058_RS07670 -2.6 -1.5 HAMP domain-containing histidine kinase compare
HMPREF1058_RS04370 -2.6 -3.5 agmatine deiminase family protein compare
HMPREF1058_RS06625 -2.6 -7.9 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS18695 -2.6 -2.4 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS17040 -2.6 -3.4 NTP transferase domain-containing protein compare
HMPREF1058_RS02220 -2.6 -5.1 branched-chain amino acid aminotransferase compare
HMPREF1058_RS07310 -2.6 -13.1 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS06600 -2.6 -1.8 DedA family protein compare
HMPREF1058_RS19200 -2.5 -3.1 hypothetical protein compare
HMPREF1058_RS08660 -2.5 -14.4 GH92 family glycosyl hydrolase compare
HMPREF1058_RS04050 -2.5 -1.7 protein BatD compare
HMPREF1058_RS07075 -2.5 -5.5 SPOR domain-containing protein compare


Specific Phenotypes

For 12 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms