Experiment set5S55 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

Group: mouse
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24

Specific Phenotypes

For 12 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms

SEED Subsystems

Subsystem #Specific
Choline Transport 1
Choline and Betaine Uptake and Betaine Biosynthesis 1
D-Galacturonate and D-Glucuronate Utilization 1
Iron acquisition in Vibrio 1
L-rhamnose utilization 1
Signal peptidase 1
Ton and Tol transport systems 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
choline-O-sulfate degradation 3 1 1