Experiment set5S544 for Enterobacter sp. TBS_079

Compare to:

0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021

200 most detrimental genes:

  gene name fitness t score description  
MPMX20_02912 +3.2 4.9 hypothetical protein compare
MPMX20_04615 +3.0 20.1 Ribokinase compare
MPMX20_03075 +2.9 3.8 HTH-type transcriptional repressor NagR compare
MPMX20_03655 +2.8 14.8 Signal transduction histidine-protein kinase BarA compare
MPMX20_02150 +2.5 2.4 Acyl-coenzyme A thioesterase PaaI compare
MPMX20_02487 +2.4 8.9 Exoribonuclease 2 compare
MPMX20_01031 +2.3 4.2 DNA-binding protein HU-beta compare
MPMX20_03627 +2.3 14.0 RNA polymerase sigma factor RpoS compare
MPMX20_04614 +2.2 15.5 Ribose operon repressor compare
MPMX20_04536 +2.2 4.4 Cell division protein FtsN compare
MPMX20_00223 +2.1 6.9 DNA-binding protein HU-alpha compare
MPMX20_00453 +2.0 3.4 RNA-binding protein Hfq compare
MPMX20_04067 +2.0 6.8 Lipoprotein NlpI compare
MPMX20_02839 +2.0 11.2 Response regulator UvrY compare
MPMX20_03879 +1.9 5.6 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MPMX20_03629 +1.8 1.6 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_00998 +1.7 1.2 Sec translocon accessory complex subunit YajC compare
MPMX20_01816 +1.7 1.4 High frequency lysogenization protein HflD compare
MPMX20_03043 +1.6 2.2 Low molecular weight protein-tyrosine-phosphatase Wzb compare
MPMX20_01570 +1.6 2.6 Integration host factor subunit beta compare
MPMX20_02746 +1.6 1.6 hypothetical protein compare
MPMX20_04060 +1.6 7.1 hypothetical protein compare
MPMX20_01331 +1.6 3.0 putative protein YbfE compare
MPMX20_01068 +1.5 2.1 hypothetical protein compare
MPMX20_03267 +1.5 1.5 Phosphohistidine phosphatase SixA compare
MPMX20_00385 +1.5 2.8 hypothetical protein compare
MPMX20_04535 +1.5 5.2 HTH-type transcriptional repressor CytR compare
MPMX20_00262 +1.4 5.0 Zinc uptake regulation protein compare
MPMX20_02738 +1.4 3.7 RNA chaperone ProQ compare
MPMX20_03662 +1.4 1.5 putative protein YqcC compare
MPMX20_00014 +1.4 2.1 hypothetical protein compare
MPMX20_03902 +1.4 3.0 Urease accessory protein UreE compare
MPMX20_03819 +1.4 1.8 putative Fe(2+)-trafficking protein compare
MPMX20_00136 +1.4 1.9 hypothetical protein compare
MPMX20_04194 +1.4 1.3 Peptide deformylase compare
MPMX20_00708 +1.4 4.7 Aerobic respiration control protein ArcA compare
MPMX20_00785 +1.3 5.2 D-alanine--D-alanine ligase B compare
MPMX20_04619 +1.3 2.6 D-ribose pyranase compare
MPMX20_02035 +1.3 5.6 Fumarate and nitrate reduction regulatory protein compare
MPMX20_01434 +1.3 3.5 putative protein YbiI compare
MPMX20_02176 +1.2 1.8 hypothetical protein compare
MPMX20_01278 +1.2 1.7 hypothetical protein compare
MPMX20_03177 +1.2 5.7 Transcriptional regulatory protein RcsB compare
MPMX20_00309 +1.2 10.4 HTH-type transcriptional regulator RpiR compare
MPMX20_04714 +1.2 9.8 hypothetical protein compare
MPMX20_03604 +1.2 1.7 Formate hydrogenlyase subunit 7 compare
MPMX20_00666 +1.2 0.9 tRNA-Leu compare
MPMX20_02794 +1.2 2.3 hypothetical protein compare
MPMX20_00387 +1.2 2.1 hypothetical protein compare
MPMX20_04340 +1.1 2.8 Cell division ATP-binding protein FtsE compare
MPMX20_01488 +1.1 2.5 hypothetical protein compare
MPMX20_00120 +1.1 4.1 Murein hydrolase activator EnvC compare
MPMX20_04699 +1.1 1.4 hypothetical protein compare
MPMX20_02585 +1.1 2.5 Oligopeptide transport system permease protein OppC compare
MPMX20_02414 +1.1 2.5 putative protein YdcY compare
MPMX20_02913 +1.1 2.7 hypothetical protein compare
MPMX20_00465 +1.1 4.9 hypothetical protein compare
MPMX20_02347 +1.1 6.4 Catabolite repressor/activator compare
MPMX20_03769 +1.1 1.6 Cell division protein ZapA compare
MPMX20_03243 +1.1 1.6 Histidine transport system permease protein HisQ compare
MPMX20_04339 +1.1 5.2 Cell division protein FtsX compare
MPMX20_04170 +1.1 2.9 DNA-binding protein Fis compare
MPMX20_02259 +1.0 1.7 Multiple antibiotic resistance protein MarA compare
MPMX20_04692 +1.0 1.4 hypothetical protein compare
MPMX20_02791 +1.0 4.0 hypothetical protein compare
MPMX20_03037 +1.0 3.1 hypothetical protein compare
MPMX20_02793 +1.0 3.7 hypothetical protein compare
MPMX20_04517 +1.0 3.1 HTH-type transcriptional repressor FabR compare
MPMX20_00273 +1.0 2.1 Class B acid phosphatase compare
MPMX20_04616 +1.0 2.5 Ribose import binding protein RbsB compare
MPMX20_02253 +1.0 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX20_03225 +1.0 1.2 hypothetical protein compare
MPMX20_03686 +1.0 1.9 hypothetical protein compare
MPMX20_03254 +1.0 1.7 USG-1 protein compare
MPMX20_03588 +1.0 3.5 PTS system glucitol/sorbitol-specific EIIA component compare
MPMX20_04090 +1.0 2.0 putative inner membrane transporter YhbE compare
MPMX20_00394 +1.0 3.1 hypothetical protein compare
MPMX20_03281 +0.9 4.1 Glucokinase compare
MPMX20_02409 +0.9 5.5 HTH-type transcriptional regulator McbR compare
MPMX20_01361 +0.9 3.3 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_01901 +0.9 1.2 Integration host factor subunit alpha compare
MPMX20_01057 +0.9 2.3 50S ribosomal protein L36 2 compare
MPMX20_03806 +0.9 2.0 hypothetical protein compare
MPMX20_02840 +0.9 4.9 hypothetical protein compare
MPMX20_04319 +0.9 1.5 HTH-type transcriptional regulator GntR compare
MPMX20_04043 +0.9 1.4 hypothetical protein compare
MPMX20_02726 +0.9 1.3 putative manganese efflux pump MntP compare
MPMX20_04029 +0.9 2.5 Cyclic dipyrimidine nucleotide synthase compare
MPMX20_03943 +0.9 1.1 hypothetical protein compare
MPMX20_03640 +0.8 2.5 hypothetical protein compare
MPMX20_02934 +0.8 2.1 Flagellar hook-basal body complex protein FliE compare
MPMX20_04328 +0.8 1.6 sn-glycerol-3-phosphate transport system permease protein UgpA compare
MPMX20_02792 +0.8 5.6 hypothetical protein compare
MPMX20_01497 +0.8 2.0 Putrescine transport system permease protein PotH compare
MPMX20_02795 +0.8 2.8 hypothetical protein compare
MPMX20_04523 +0.8 1.7 Acetylornithine deacetylase compare
MPMX20_03818 +0.8 2.8 Adenine DNA glycosylase compare
MPMX20_03515 +0.8 1.8 hypothetical protein compare
MPMX20_03356 +0.8 5.6 Polyphosphate kinase compare
MPMX20_03000 +0.8 2.7 Protein YeeZ compare
MPMX20_02882 +0.8 1.0 hypothetical protein compare
MPMX20_00599 +0.8 2.2 hypothetical protein compare
MPMX20_00388 +0.8 0.7 hypothetical protein compare
MPMX20_01137 +0.8 1.5 Multiple antibiotic resistance protein MarA compare
MPMX20_04544 +0.8 1.2 Fructose-1,6-bisphosphatase 1 class 2 compare
MPMX20_00829 +0.7 2.6 Poly(A) polymerase I compare
MPMX20_04359 +0.7 1.5 hypothetical protein compare
MPMX20_04735 +0.7 3.5 hypothetical protein compare
MPMX20_01768 +0.7 1.3 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_01205 +0.7 5.5 hypothetical protein compare
MPMX20_03304 +0.7 1.8 hypothetical protein compare
MPMX20_04573 +0.7 1.6 hypothetical protein compare
MPMX20_02358 +0.7 2.3 putative D,D-dipeptide transport system permease protein DdpC compare
MPMX20_04115 +0.7 3.9 Aerobic respiration control sensor protein ArcB compare
MPMX20_04282 +0.7 2.3 hypothetical protein compare
MPMX20_02785 +0.7 1.6 Protein phosphatase CheZ compare
MPMX20_01965 +0.7 1.5 Response regulator protein TmoT compare
MPMX20_00173 +0.7 2.6 Nucleotide-binding protein ExpZ compare
MPMX20_04300 +0.7 1.7 Putative ribose-phosphate pyrophosphokinase compare
MPMX20_03383 +0.7 1.5 Exodeoxyribonuclease 7 large subunit compare
MPMX20_03808 +0.7 2.1 putative protein YggR compare
MPMX20_00674 +0.7 1.8 Osmotically-inducible protein Y compare
MPMX20_04686 +0.7 2.1 Phospholipase D compare
MPMX20_02625 +0.7 1.6 Nitrate regulatory protein compare
MPMX20_01288 +0.7 5.4 putative HTH-type transcriptional regulator YbdO compare
MPMX20_00007 +0.7 1.2 Sugar phosphatase YidA compare
MPMX20_03377 +0.7 1.3 hypothetical protein compare
MPMX20_03862 +0.7 3.0 Protein YgiW compare
MPMX20_03345 +0.7 1.5 putative protein YfgD compare
MPMX20_04433 +0.7 2.5 Trk system potassium uptake protein TrkH compare
MPMX20_00838 +0.7 0.9 Iron(3+)-hydroxamate-binding protein FhuD compare
MPMX20_00902 +0.7 2.6 Glc operon transcriptional activator compare
MPMX20_04006 +0.7 1.7 Protein YqjC compare
MPMX20_02555 +0.6 2.2 HTH-type transcriptional regulator PgrR compare
MPMX20_03590 +0.6 1.2 hypothetical protein compare
MPMX20_03866 +0.6 2.3 putative quinol monooxygenase YgiN compare
MPMX20_01615 +0.6 1.8 putative protein YccU compare
MPMX20_02208 +0.6 1.4 Transcriptional repressor FrmR compare
MPMX20_01002 +0.6 0.9 hypothetical protein compare
MPMX20_02953 +0.6 1.6 hypothetical protein compare
MPMX20_03322 +0.6 1.9 N-acetylmuramoyl-L-alanine amidase AmiA compare
MPMX20_00386 +0.6 1.4 hypothetical protein compare
MPMX20_01984 +0.6 1.0 Ribonuclease T compare
MPMX20_03346 +0.6 2.3 hypothetical protein compare
MPMX20_03442 +0.6 2.2 Sigma-E factor regulatory protein RseB compare
MPMX20_02630 +0.6 1.4 Putative cation transport regulator ChaB compare
MPMX20_00013 +0.6 1.8 hypothetical protein compare
MPMX20_03773 +0.6 1.8 HTH-type transcriptional regulator ArgP compare
MPMX20_01279 +0.6 3.0 Ribonuclease I compare
MPMX20_03085 +0.6 2.0 Low molecular weight protein-tyrosine-phosphatase Etp compare
MPMX20_01749 +0.6 2.8 Flagella synthesis protein FlgN compare
MPMX20_00587 +0.6 1.8 hypothetical protein compare
MPMX20_03078 +0.6 2.2 Diaminobutyrate--2-oxoglutarate aminotransferase compare
MPMX20_00383 +0.6 2.8 Transcriptional regulatory protein PhoP compare
MPMX20_01624 +0.6 1.4 tRNA-Ser compare
MPMX20_00590 +0.6 1.5 hypothetical protein compare
MPMX20_01465 +0.6 1.8 Fructose-6-phosphate aldolase 1 compare
MPMX20_00989 +0.6 2.0 Proline-specific permease ProY compare
MPMX20_00441 +0.6 0.9 Phosphatidylserine decarboxylase proenzyme compare
MPMX20_02321 +0.6 1.2 Nodulation protein D 2 compare
MPMX20_04019 +0.6 2.5 Propionate kinase compare
MPMX20_02764 +0.6 2.6 Zinc import ATP-binding protein ZnuC compare
MPMX20_02135 +0.6 1.7 hypothetical protein compare
MPMX20_01775 +0.6 0.9 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
MPMX20_00338 +0.6 2.4 Cytoskeleton-binding toxin CbtA compare
MPMX20_03417 +0.6 4.0 hypothetical protein compare
MPMX20_03380 +0.6 2.0 hypothetical protein compare
MPMX20_01015 +0.6 1.1 Protein/nucleic acid deglycase 3 compare
MPMX20_03343 +0.6 1.5 Putative transport protein YhhT compare
MPMX20_03623 +0.6 1.7 Transcriptional regulator HosA compare
MPMX20_01185 +0.6 1.4 hypothetical protein compare
MPMX20_04754 +0.6 1.5 hypothetical protein compare
MPMX20_02423 +0.6 1.1 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX20_03929 +0.6 1.2 hypothetical protein compare
MPMX20_00810 +0.6 1.3 hypothetical protein compare
MPMX20_01551 +0.6 1.9 Leucine-responsive regulatory protein compare
MPMX20_01381 +0.6 1.8 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive compare
MPMX20_00704 +0.6 2.1 hypothetical protein compare
MPMX20_03149 +0.6 1.0 Ribosomal small subunit pseudouridine synthase A compare
MPMX20_01886 +0.6 1.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase compare
MPMX20_02854 +0.6 3.7 Flagellin compare
MPMX20_01853 +0.6 2.8 DNA topoisomerase 3 compare
MPMX20_00554 +0.6 2.8 Beta-xylosidase compare
MPMX20_03779 +0.6 1.8 D-erythrose-4-phosphate dehydrogenase compare
MPMX20_03628 +0.6 2.8 Murein hydrolase activator NlpD compare
MPMX20_03412 +0.6 0.9 HTH-type transcriptional regulator IscR compare
MPMX20_03843 +0.6 2.1 hypothetical protein compare
MPMX20_02068 +0.5 1.5 Osmoprotectant-binding protein OsmX compare
MPMX20_04036 +0.5 2.5 hypothetical protein compare
MPMX20_00466 +0.5 3.6 Lipoprotein BsmA compare
MPMX20_01420 +0.5 2.2 putative multidrug ABC transporter permease YbhR compare
MPMX20_00133 +0.5 0.5 Mannitol operon repressor compare
MPMX20_01620 +0.5 1.6 Acylphosphatase compare
MPMX20_03487 +0.5 0.9 Outer membrane protein assembly factor BamE compare
MPMX20_00010 +0.5 0.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX20_02981 +0.5 1.4 hypothetical protein compare
MPMX20_00027 +0.5 1.6 Multidrug resistance protein D compare
MPMX20_00530 +0.5 1.7 Anaerobic ribonucleoside-triphosphate reductase-activating protein compare
MPMX20_01958 +0.5 0.6 Fumarase D compare
MPMX20_00340 +0.5 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Chryseobacterium gleum TBS_021 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms