Experiment set5S541 for Enterobacter sp. TBS_079

Compare to:

1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021

200 most important genes:

  gene name fitness t score description  
MPMX20_03095 -4.3 -2.8 hypothetical protein compare
MPMX20_03986 -4.2 -4.1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_04768 -4.2 -2.9 hypothetical protein compare
MPMX20_02591 -3.8 -5.7 DNA-binding protein H-NS compare
MPMX20_00831 -3.7 -5.6 RNA polymerase-binding transcription factor DksA compare
MPMX20_04444 -3.2 -1.8 Sec-independent protein translocase protein TatA compare
MPMX20_01958 -3.2 -1.3 Fumarase D compare
MPMX20_00108 -3.1 -22.4 hypothetical protein compare
MPMX20_03211 -3.1 -3.0 NADH-quinone oxidoreductase subunit I compare
MPMX20_00110 -3.1 -16.8 hypothetical protein compare
MPMX20_04489 -3.0 -17.2 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_04530 -3.0 -11.7 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_00105 -3.0 -16.9 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_03019 -2.9 -14.2 hypothetical protein compare
MPMX20_04440 -2.9 -2.0 Transcription antitermination protein RfaH compare
MPMX20_00109 -2.9 -18.9 hypothetical protein compare
MPMX20_03018 -2.9 -4.4 hypothetical protein compare
MPMX20_02767 -2.9 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_04557 -2.8 -11.9 Sensor histidine kinase CpxA compare
MPMX20_04375 -2.8 -7.6 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_00453 -2.8 -1.9 RNA-binding protein Hfq compare
MPMX20_04650 -2.7 -1.9 tRNA modification GTPase MnmE compare
MPMX20_01334 -2.7 -8.7 Phosphoglucomutase compare
MPMX20_04442 -2.7 -3.7 Sec-independent protein translocase protein TatC compare
MPMX20_02768 -2.7 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_01370 -2.7 -3.2 Peptidoglycan-associated lipoprotein compare
MPMX20_01972 -2.7 -1.5 tRNA-Val compare
MPMX20_04133 -2.6 -7.5 Stringent starvation protein A compare
MPMX20_01367 -2.6 -3.5 Tol-Pal system protein TolR compare
MPMX20_03021 -2.5 -6.6 hypothetical protein compare
MPMX20_01368 -2.5 -2.9 hypothetical protein compare
MPMX20_03385 -2.5 -4.6 hypothetical protein compare
MPMX20_04465 -2.5 -3.4 Tyrosine recombinase XerC compare
MPMX20_04467 -2.5 -5.7 Diaminopimelate epimerase compare
MPMX20_03020 -2.4 -8.4 hypothetical protein compare
MPMX20_03756 -2.4 -4.3 FAD assembly factor SdhE compare
MPMX20_04626 -2.4 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_03017 -2.3 -12.9 hypothetical protein compare
MPMX20_03208 -2.3 -4.4 NADH-quinone oxidoreductase subunit L compare
MPMX20_04140 -2.3 -5.4 Malate dehydrogenase compare
MPMX20_03490 -2.3 -4.7 SsrA-binding protein compare
MPMX20_01098 -2.3 -3.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01097 -2.3 -5.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_02576 -2.3 -2.2 Protein TonB compare
MPMX20_02102 -2.3 -1.9 hypothetical protein compare
MPMX20_00136 -2.2 -1.2 hypothetical protein compare
MPMX20_00693 -2.2 -7.2 Phosphoserine phosphatase compare
MPMX20_04639 -2.2 -1.5 Phosphate-binding protein PstS compare
MPMX20_03212 -2.2 -4.2 NADH-quinone oxidoreductase subunit H compare
MPMX20_04483 -2.2 -1.5 Lipid III flippase compare
MPMX20_01369 -2.2 -4.4 Tol-Pal system protein TolB compare
MPMX20_02696 -2.2 -6.8 Murein tetrapeptide carboxypeptidase compare
MPMX20_03015 -2.2 -16.8 Phosphoglucosamine mutase compare
MPMX20_04518 -2.2 -4.5 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_04374 -2.1 -4.3 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_01950 -2.1 -3.1 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_00747 -2.1 -3.4 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_01355 -2.0 -0.8 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_01366 -2.0 -2.4 Tol-Pal system protein TolQ compare
MPMX20_03338 -2.0 -3.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00106 -2.0 -2.4 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_02020 -2.0 -7.3 Mannose-6-phosphate isomerase compare
MPMX20_04601 -2.0 -1.9 DNA polymerase I compare
MPMX20_03016 -2.0 -14.4 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_01353 -1.9 -4.3 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_00712 -1.9 -8.0 Threonine synthase compare
MPMX20_02997 -1.9 -6.2 Exodeoxyribonuclease I compare
MPMX20_01350 -1.9 -3.4 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_00102 -1.9 -1.3 hypothetical protein compare
MPMX20_03022 -1.9 -1.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_00241 -1.9 -6.6 Glucose-6-phosphate isomerase compare
MPMX20_00226 -1.9 -5.6 Bifunctional purine biosynthesis protein PurH compare
MPMX20_03390 -1.9 -5.7 Outer membrane protein assembly factor BamB compare
MPMX20_03247 -1.9 -4.2 Amidophosphoribosyltransferase compare
MPMX20_01349 -1.9 -4.4 Citrate synthase compare
MPMX20_03075 -1.9 -4.4 HTH-type transcriptional repressor NagR compare
MPMX20_02919 -1.8 -5.8 hypothetical protein compare
MPMX20_03396 -1.8 -5.0 Nucleoside diphosphate kinase compare
MPMX20_03047 -1.8 -3.7 dCTP deaminase compare
MPMX20_03217 -1.8 -3.0 NADH-quinone oxidoreductase subunit B compare
MPMX20_03753 -1.8 -4.5 Tyrosine recombinase XerD compare
MPMX20_03209 -1.8 -2.2 NADH-quinone oxidoreductase subunit K compare
MPMX20_03216 -1.8 -7.2 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_01156 -1.8 -2.4 hypothetical protein compare
MPMX20_04377 -1.8 -8.5 putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD compare
MPMX20_03409 -1.8 -1.7 Iron-binding protein IscA compare
MPMX20_00570 -1.8 -10.7 putative BsuMI modification methylase subunit YdiO compare
MPMX20_02672 -1.8 -11.1 hypothetical protein compare
MPMX20_00711 -1.7 -8.6 Homoserine kinase compare
MPMX20_02920 -1.7 -6.8 hypothetical protein compare
MPMX20_03218 -1.7 -2.0 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_04306 -1.7 -3.2 Glycerol-3-phosphate regulon repressor compare
MPMX20_03213 -1.7 -5.4 NADH-quinone oxidoreductase subunit G compare
MPMX20_04279 -1.7 -2.5 Shikimate kinase 1 compare
MPMX20_01357 -1.7 -3.1 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04731 -1.7 -5.5 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_03488 -1.7 -2.3 Persistence and stress-resistance antitoxin PasI compare
MPMX20_02931 -1.7 -7.8 hypothetical protein compare
MPMX20_01765 -1.6 -3.7 Ribonuclease E compare
MPMX20_04301 -1.6 -2.4 Fe/S biogenesis protein NfuA compare
MPMX20_01566 -1.6 -8.5 Phosphoserine aminotransferase compare
MPMX20_02305 -1.6 -1.5 hypothetical protein compare
MPMX20_02879 -1.6 -3.4 hypothetical protein compare
MPMX20_02009 -1.6 -6.1 Ion-translocating oxidoreductase complex subunit C compare
MPMX20_04119 -1.6 -1.1 DNA polymerase III subunit chi compare
MPMX20_03407 -1.6 -1.5 Chaperone protein HscA compare
MPMX20_02918 -1.6 -4.7 hypothetical protein compare
MPMX20_04110 -1.5 -3.4 Nitrogen regulatory protein compare
MPMX20_03207 -1.5 -3.8 NADH-quinone oxidoreductase subunit M compare
MPMX20_02701 -1.5 -1.5 Fatty acid metabolism regulator protein compare
MPMX20_03440 -1.5 -2.5 Elongation factor 4 compare
MPMX20_02893 -1.5 -5.6 hypothetical protein compare
MPMX20_03267 -1.5 -2.3 Phosphohistidine phosphatase SixA compare
MPMX20_03264 -1.5 -4.2 Chorismate synthase compare
MPMX20_03215 -1.5 -1.8 NADH-quinone oxidoreductase subunit E compare
MPMX20_01552 -1.5 -2.3 hypothetical protein compare
MPMX20_00812 -1.5 -3.5 Aconitate hydratase B compare
MPMX20_00258 -1.5 -3.9 Diacylglycerol kinase compare
MPMX20_02953 -1.5 -2.1 hypothetical protein compare
MPMX20_01351 -1.5 -1.8 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_04111 -1.5 -4.1 RNase adapter protein RapZ compare
MPMX20_01354 -1.5 -1.4 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_02882 -1.5 -6.7 hypothetical protein compare
MPMX20_04170 -1.5 -1.7 DNA-binding protein Fis compare
MPMX20_03770 -1.5 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
MPMX20_03850 -1.5 -3.2 Biopolymer transport protein ExbD compare
MPMX20_00480 -1.4 -2.1 50S ribosomal protein L9 compare
MPMX20_02885 -1.4 -5.9 hypothetical protein compare
MPMX20_03354 -1.4 -5.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_00514 -1.4 -3.0 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_00722 -1.4 -5.8 Na(+)/H(+) antiporter NhaA compare
MPMX20_03678 -1.4 -1.2 tRNA-Met compare
MPMX20_02766 -1.4 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_00728 -1.4 -1.3 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase compare
MPMX20_04276 -1.4 -3.1 DNA adenine methylase compare
MPMX20_01352 -1.4 -5.3 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_01356 -1.4 -5.2 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_00086 -1.4 -2.3 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_03851 -1.4 -6.1 Biopolymer transport protein ExbB compare
MPMX20_00899 -1.4 -1.6 Ribonuclease HI compare
MPMX20_02896 -1.4 -3.7 Lysozyme RrrD compare
MPMX20_03408 -1.4 -0.9 Co-chaperone protein HscB compare
MPMX20_04463 -1.4 -4.1 DNA helicase II compare
MPMX20_01333 -1.4 -3.6 Negative modulator of initiation of replication compare
MPMX20_00740 -1.3 -3.3 Carbamoyl-phosphate synthase large chain compare
MPMX20_02770 -1.3 -2.3 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_00773 -1.3 -5.7 Catabolite repressor/activator compare
MPMX20_04466 -1.3 -3.1 hypothetical protein compare
MPMX20_02916 -1.3 -4.9 hypothetical protein compare
MPMX20_02869 -1.3 -10.6 hypothetical protein compare
MPMX20_02929 -1.3 -2.2 hypothetical protein compare
MPMX20_02877 -1.3 -6.8 hypothetical protein compare
MPMX20_01275 -1.3 -1.9 hypothetical protein compare
MPMX20_00739 -1.3 -1.9 Carbamoyl-phosphate synthase small chain compare
MPMX20_03154 -1.3 -5.5 Inner membrane protein YejM compare
MPMX20_01750 -1.3 -4.2 Negative regulator of flagellin synthesis compare
MPMX20_02881 -1.3 -2.6 hypothetical protein compare
MPMX20_03260 -1.3 -2.2 hypothetical protein compare
MPMX20_00721 -1.3 -1.2 Chaperone protein DnaJ compare
MPMX20_04640 -1.3 -1.9 Phosphate transport system permease protein PstC compare
MPMX20_00764 -1.3 -1.1 hypothetical protein compare
MPMX20_02478 -1.3 -3.0 Putrescine export system ATP-binding protein SapF compare
MPMX20_04532 -1.3 -1.7 Met repressor compare
MPMX20_02775 -1.3 -4.3 Carboxy-S-adenosyl-L-methionine synthase compare
MPMX20_03233 -1.3 -7.3 HTH-type transcriptional regulator GntR compare
MPMX20_02895 -1.3 -5.0 hypothetical protein compare
MPMX20_03010 -1.3 -1.2 UDP-glucose 4-epimerase compare
MPMX20_04520 -1.2 -5.4 Argininosuccinate lyase compare
MPMX20_04137 -1.2 -3.1 Inner membrane protein YhcB compare
MPMX20_02891 -1.2 -7.7 hypothetical protein compare
MPMX20_01022 -1.2 -6.2 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_04077 -1.2 -5.5 Argininosuccinate synthase compare
MPMX20_00801 -1.2 -1.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_03210 -1.2 -2.8 NADH-quinone oxidoreductase subunit J compare
MPMX20_02890 -1.2 -8.6 hypothetical protein compare
MPMX20_04585 -1.2 -3.6 HTH-type transcriptional repressor CsqR compare
MPMX20_02872 -1.2 -3.9 hypothetical protein compare
MPMX20_02008 -1.2 -4.8 Ion-translocating oxidoreductase complex subunit D compare
MPMX20_00452 -1.2 -5.3 tRNA dimethylallyltransferase compare
MPMX20_03132 -1.2 -4.4 Tagatose-6-phosphate kinase compare
MPMX20_02149 -1.2 -4.1 3-hydroxyadipyl-CoA dehydrogenase compare
MPMX20_00225 -1.2 -4.5 Phosphoribosylamine--glycine ligase compare
MPMX20_03629 -1.2 -2.6 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_01021 -1.2 -2.7 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_01969 -1.2 -1.7 Carbonic anhydrase 1 compare
MPMX20_03447 -1.2 -4.5 ATP-dependent RNA helicase SrmB compare
MPMX20_02873 -1.2 -5.3 hypothetical protein compare
MPMX20_03206 -1.2 -4.3 NADH-quinone oxidoreductase subunit N compare
MPMX20_02593 -1.2 -6.7 Regulator of RpoS compare
MPMX20_00087 -1.2 -1.7 DNA-directed RNA polymerase subunit omega compare
MPMX20_02475 -1.1 -1.6 Putrescine export system permease protein SapB compare
MPMX20_00675 -1.1 -2.9 hypothetical protein compare
MPMX20_02894 -1.1 -4.6 hypothetical protein compare
MPMX20_03226 -1.1 -1.7 Acetate kinase compare
MPMX20_04194 -1.1 -1.1 Peptide deformylase compare
MPMX20_02899 -1.1 -4.3 hypothetical protein compare
MPMX20_00998 -1.1 -2.2 Sec translocon accessory complex subunit YajC compare
MPMX20_02147 -1.1 -4.1 2,3-dehydroadipyl-CoA hydratase compare
MPMX20_01741 -1.1 -1.3 Dihydroorotase compare
MPMX20_00537 -1.1 -5.1 Trehalose-6-phosphate hydrolase compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Chryseobacterium gleum TBS_021 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms