Experiment set5S529 for Enterobacter sp. TBS_079

Compare to:

1X LB plate, 1:1 coculture with Pseudomonas lini TBS_031

200 most important genes:

  gene name fitness t score description  
MPMX20_00831 -3.7 -3.6 RNA polymerase-binding transcription factor DksA compare
MPMX20_03986 -3.4 -3.3 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_04768 -3.3 -3.3 hypothetical protein compare
MPMX20_04427 -3.2 -1.1 5S ribosomal RNA compare
MPMX20_01334 -3.0 -6.3 Phosphoglucomutase compare
MPMX20_04489 -2.9 -14.7 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03020 -2.9 -8.8 hypothetical protein compare
MPMX20_02591 -2.8 -5.4 DNA-binding protein H-NS compare
MPMX20_03019 -2.8 -10.5 hypothetical protein compare
MPMX20_04444 -2.7 -1.3 Sec-independent protein translocase protein TatA compare
MPMX20_04374 -2.7 -4.1 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_03154 -2.7 -6.5 Inner membrane protein YejM compare
MPMX20_00108 -2.7 -17.4 hypothetical protein compare
MPMX20_04443 -2.6 -2.5 Sec-independent protein translocase protein TatB compare
MPMX20_04375 -2.6 -5.6 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_04530 -2.6 -10.0 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_03211 -2.5 -2.4 NADH-quinone oxidoreductase subunit I compare
MPMX20_03015 -2.5 -18.8 Phosphoglucosamine mutase compare
MPMX20_00105 -2.4 -10.8 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_01352 -2.4 -4.6 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_00110 -2.4 -13.7 hypothetical protein compare
MPMX20_02020 -2.4 -9.1 Mannose-6-phosphate isomerase compare
MPMX20_01950 -2.4 -1.6 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_01356 -2.3 -5.6 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_01972 -2.3 -1.1 tRNA-Val compare
MPMX20_01368 -2.3 -1.6 hypothetical protein compare
MPMX20_04442 -2.3 -1.6 Sec-independent protein translocase protein TatC compare
MPMX20_03210 -2.3 -2.2 NADH-quinone oxidoreductase subunit J compare
MPMX20_00109 -2.3 -15.0 hypothetical protein compare
MPMX20_03209 -2.3 -1.6 NADH-quinone oxidoreductase subunit K compare
MPMX20_03017 -2.2 -11.3 hypothetical protein compare
MPMX20_03354 -2.1 -5.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03016 -2.1 -13.7 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_04140 -2.1 -2.9 Malate dehydrogenase compare
MPMX20_01021 -2.1 -2.9 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_01022 -2.1 -6.8 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_03756 -2.1 -3.4 FAD assembly factor SdhE compare
MPMX20_04440 -2.1 -1.4 Transcription antitermination protein RfaH compare
MPMX20_03216 -2.1 -5.0 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_01370 -2.0 -2.4 Peptidoglycan-associated lipoprotein compare
MPMX20_03208 -2.0 -2.8 NADH-quinone oxidoreductase subunit L compare
MPMX20_03687 -2.0 -2.3 hypothetical protein compare
MPMX20_00998 -2.0 -2.4 Sec translocon accessory complex subunit YajC compare
MPMX20_01020 -2.0 -1.4 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_04028 -2.0 -1.6 hypothetical protein compare
MPMX20_03021 -2.0 -4.3 hypothetical protein compare
MPMX20_04730 -2.0 -6.5 hypothetical protein compare
MPMX20_03018 -2.0 -3.5 hypothetical protein compare
MPMX20_03678 -1.9 -1.1 tRNA-Met compare
MPMX20_03212 -1.9 -2.6 NADH-quinone oxidoreductase subunit H compare
MPMX20_00419 -1.9 -6.3 Aspartate ammonia-lyase compare
MPMX20_02696 -1.8 -7.3 Murein tetrapeptide carboxypeptidase compare
MPMX20_03214 -1.8 -3.7 NADH-quinone oxidoreductase subunit F compare
MPMX20_02919 -1.8 -6.7 hypothetical protein compare
MPMX20_02895 -1.8 -6.9 hypothetical protein compare
MPMX20_02896 -1.8 -7.3 Lysozyme RrrD compare
MPMX20_03213 -1.8 -3.8 NADH-quinone oxidoreductase subunit G compare
MPMX20_01349 -1.8 -3.3 Citrate synthase compare
MPMX20_02672 -1.7 -8.7 hypothetical protein compare
MPMX20_04650 -1.7 -1.7 tRNA modification GTPase MnmE compare
MPMX20_01357 -1.7 -4.0 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04377 -1.7 -6.7 putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD compare
MPMX20_02576 -1.7 -1.2 Protein TonB compare
MPMX20_01366 -1.7 -1.6 Tol-Pal system protein TolQ compare
MPMX20_01543 -1.7 -1.9 ATP-dependent Clp protease adapter protein ClpS compare
MPMX20_02768 -1.7 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_02646 -1.7 -1.1 hypothetical protein compare
MPMX20_02997 -1.7 -4.6 Exodeoxyribonuclease I compare
MPMX20_03385 -1.6 -3.4 hypothetical protein compare
MPMX20_01350 -1.6 -2.9 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_03217 -1.6 -2.4 NADH-quinone oxidoreductase subunit B compare
MPMX20_04162 -1.6 -2.2 3-dehydroquinate dehydratase compare
MPMX20_01355 -1.6 -0.5 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_00395 -1.6 -2.9 hypothetical protein compare
MPMX20_02920 -1.5 -6.1 hypothetical protein compare
MPMX20_02894 -1.5 -3.3 hypothetical protein compare
MPMX20_01353 -1.5 -3.2 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_01367 -1.5 -2.5 Tol-Pal system protein TolR compare
MPMX20_00801 -1.5 -2.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_02885 -1.5 -7.3 hypothetical protein compare
MPMX20_02098 -1.5 -4.9 HTH-type transcriptional repressor RspR compare
MPMX20_02767 -1.5 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03207 -1.4 -2.4 NADH-quinone oxidoreductase subunit M compare
MPMX20_02918 -1.4 -4.6 hypothetical protein compare
MPMX20_03396 -1.4 -3.4 Nucleoside diphosphate kinase compare
MPMX20_04306 -1.4 -3.1 Glycerol-3-phosphate regulon repressor compare
MPMX20_04141 -1.4 -3.7 Arginine repressor compare
MPMX20_03206 -1.4 -3.6 NADH-quinone oxidoreductase subunit N compare
MPMX20_03627 -1.4 -7.4 RNA polymerase sigma factor RpoS compare
MPMX20_01911 -1.4 -3.2 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B compare
MPMX20_02877 -1.4 -7.3 hypothetical protein compare
MPMX20_01958 -1.4 -0.7 Fumarase D compare
MPMX20_00226 -1.4 -3.5 Bifunctional purine biosynthesis protein PurH compare
MPMX20_03095 -1.4 -1.2 hypothetical protein compare
MPMX20_03218 -1.3 -1.3 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_01351 -1.3 -2.4 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_01019 -1.3 -3.6 Protoheme IX farnesyltransferase compare
MPMX20_04085 -1.3 -2.4 Transcription elongation factor GreA compare
MPMX20_01869 -1.3 -4.6 Succinylglutamate desuccinylase compare
MPMX20_00340 -1.3 -2.1 hypothetical protein compare
MPMX20_03509 -1.3 -1.1 hypothetical protein compare
MPMX20_02867 -1.3 -6.4 hypothetical protein compare
MPMX20_04483 -1.3 -0.9 Lipid III flippase compare
MPMX20_03753 -1.3 -2.8 Tyrosine recombinase XerD compare
MPMX20_01765 -1.3 -3.0 Ribonuclease E compare
MPMX20_03047 -1.3 -2.4 dCTP deaminase compare
MPMX20_04559 -1.3 -2.1 Superoxide dismutase [Mn] compare
MPMX20_01097 -1.2 -3.4 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_04601 -1.2 -1.2 DNA polymerase I compare
MPMX20_00386 -1.2 -2.0 hypothetical protein compare
MPMX20_03851 -1.2 -4.9 Biopolymer transport protein ExbB compare
MPMX20_01296 -1.2 -3.2 Ribosomal silencing factor RsfS compare
MPMX20_01865 -1.2 -6.0 Succinylornithine transaminase compare
MPMX20_04518 -1.2 -2.7 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_02549 -1.2 -2.1 hypothetical protein compare
MPMX20_02929 -1.2 -2.1 hypothetical protein compare
MPMX20_01607 -1.2 -2.8 Outer membrane protein A compare
MPMX20_03850 -1.2 -2.3 Biopolymer transport protein ExbD compare
MPMX20_03075 -1.2 -3.1 HTH-type transcriptional repressor NagR compare
MPMX20_00106 -1.2 -0.8 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_02882 -1.2 -4.7 hypothetical protein compare
MPMX20_02546 -1.2 -1.6 hypothetical protein compare
MPMX20_00539 -1.2 -5.5 HTH-type transcriptional regulator TreR compare
MPMX20_04110 -1.2 -2.2 Nitrogen regulatory protein compare
MPMX20_02871 -1.2 -5.3 hypothetical protein compare
MPMX20_03308 -1.2 -2.4 Cysteine synthase A compare
MPMX20_02899 -1.2 -4.9 hypothetical protein compare
MPMX20_02908 -1.1 -5.0 hypothetical protein compare
MPMX20_02927 -1.1 -3.9 hypothetical protein compare
MPMX20_02147 -1.1 -3.4 2,3-dehydroadipyl-CoA hydratase compare
MPMX20_00643 -1.1 -2.2 HTH-type transcriptional regulator FarR compare
MPMX20_01867 -1.1 -4.5 N-succinylglutamate 5-semialdehyde dehydrogenase compare
MPMX20_00197 -1.1 -1.1 tRNA-Tyr compare
MPMX20_01023 -1.1 -6.8 Cytochrome bo(3) ubiquinol oxidase subunit 2 compare
MPMX20_01001 -1.1 -3.1 hypothetical protein compare
MPMX20_03742 -1.1 -3.4 HTH-type transcriptional regulator GalR compare
MPMX20_03022 -1.1 -0.8 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04585 -1.1 -2.7 HTH-type transcriptional repressor CsqR compare
MPMX20_04626 -1.1 -1.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_02701 -1.1 -0.7 Fatty acid metabolism regulator protein compare
MPMX20_01369 -1.1 -2.9 Tol-Pal system protein TolB compare
MPMX20_02893 -1.1 -2.5 hypothetical protein compare
MPMX20_00086 -1.1 -2.2 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_00747 -1.1 -2.2 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_02872 -1.1 -4.3 hypothetical protein compare
MPMX20_03338 -1.1 -1.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_04136 -1.1 -5.4 Cell division protein ZapE compare
MPMX20_00570 -1.1 -6.9 putative BsuMI modification methylase subunit YdiO compare
MPMX20_02102 -1.1 -1.2 hypothetical protein compare
MPMX20_03267 -1.1 -1.3 Phosphohistidine phosphatase SixA compare
MPMX20_00505 -1.1 -4.4 Gamma-glutamylcyclotransferase family protein ytfP compare
MPMX20_04133 -1.1 -2.8 Stringent starvation protein A compare
MPMX20_02926 -1.0 -1.9 hypothetical protein compare
MPMX20_00693 -1.0 -4.0 Phosphoserine phosphatase compare
MPMX20_00111 -1.0 -6.2 hypothetical protein compare
MPMX20_00816 -1.0 -2.8 hypothetical protein compare
MPMX20_02869 -1.0 -8.4 hypothetical protein compare
MPMX20_02633 -1.0 -2.6 hypothetical protein compare
MPMX20_03390 -1.0 -3.1 Outer membrane protein assembly factor BamB compare
MPMX20_03090 -1.0 -0.6 Methionine--tRNA ligase compare
MPMX20_01354 -1.0 -0.7 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03590 -1.0 -1.9 hypothetical protein compare
MPMX20_02472 -1.0 -3.4 Phage shock protein A compare
MPMX20_02925 -1.0 -7.6 hypothetical protein compare
MPMX20_02879 -1.0 -1.6 hypothetical protein compare
MPMX20_02903 -1.0 -1.6 hypothetical protein compare
MPMX20_03965 -1.0 -3.6 hypothetical protein compare
MPMX20_02866 -1.0 -7.4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
MPMX20_03215 -1.0 -1.2 NADH-quinone oxidoreductase subunit E compare
MPMX20_00514 -1.0 -1.2 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_02930 -1.0 -3.1 hypothetical protein compare
MPMX20_03641 -1.0 -3.4 Phosphoadenosine phosphosulfate reductase compare
MPMX20_03479 -1.0 -1.1 30S ribosomal protein S16 compare
MPMX20_02922 -1.0 -2.9 hypothetical protein compare
MPMX20_02909 -1.0 -4.1 hypothetical protein compare
MPMX20_01394 -1.0 -4.0 6-phosphogluconolactonase compare
MPMX20_02863 -1.0 -6.5 hypothetical protein compare
MPMX20_04097 -1.0 -3.2 Intermembrane phospholipid transport system binding protein MlaB compare
MPMX20_01542 -1.0 -1.3 Cold shock-like protein CspD compare
MPMX20_00102 -1.0 -0.7 hypothetical protein compare
MPMX20_03264 -1.0 -2.7 Chorismate synthase compare
MPMX20_00392 -1.0 -2.8 hypothetical protein compare
MPMX20_02145 -1.0 -3.3 Putative 1,2-phenylacetyl-CoA epoxidase, subunit D compare
MPMX20_00241 -0.9 -3.7 Glucose-6-phosphate isomerase compare
MPMX20_00773 -0.9 -3.0 Catabolite repressor/activator compare
MPMX20_02864 -0.9 -2.4 hypothetical protein compare
MPMX20_02775 -0.9 -3.1 Carboxy-S-adenosyl-L-methionine synthase compare
MPMX20_02906 -0.9 -2.9 hypothetical protein compare
MPMX20_00456 -0.9 -3.6 Modulator of FtsH protease HflC compare
MPMX20_02917 -0.9 -3.0 hypothetical protein compare
MPMX20_02141 -0.9 -3.5 Bifunctional protein PaaZ compare
MPMX20_04465 -0.9 -1.9 Tyrosine recombinase XerC compare
MPMX20_04546 -0.9 -1.4 hypothetical protein compare
MPMX20_01837 -0.9 -1.4 hypothetical protein compare
MPMX20_00837 -0.9 -3.4 Iron(3+)-hydroxamate import ATP-binding protein FhuC compare
MPMX20_02889 -0.9 -4.6 hypothetical protein compare
MPMX20_01722 -0.9 -1.0 putative csgAB operon transcriptional regulatory protein compare
MPMX20_00455 -0.9 -2.9 Modulator of FtsH protease HflK compare
MPMX20_02898 -0.9 -4.8 hypothetical protein compare
MPMX20_02227 -0.9 -5.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Pseudomonas lini TBS_031 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms