Experiment set5S514 for Enterobacter sp. TBS_079

Compare to:

M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

200 most detrimental genes:

  gene name fitness t score description  
MPMX20_03655 +3.5 14.7 Signal transduction histidine-protein kinase BarA compare
MPMX20_04558 +2.8 2.6 Protein YiiM compare
MPMX20_00873 +2.6 1.6 Protein rof compare
MPMX20_01570 +2.5 2.9 Integration host factor subunit beta compare
MPMX20_03623 +2.4 2.0 Transcriptional regulator HosA compare
MPMX20_00785 +2.4 3.2 D-alanine--D-alanine ligase B compare
MPMX20_04585 +2.3 2.7 HTH-type transcriptional repressor CsqR compare
MPMX20_02422 +2.3 1.6 Inner membrane ABC transporter permease protein YdcU compare
MPMX20_02949 +2.2 1.6 Protein DsrB compare
MPMX20_04601 +2.2 1.5 DNA polymerase I compare
MPMX20_02203 +2.2 3.0 hypothetical protein compare
MPMX20_03218 +2.2 1.8 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_04272 +2.1 1.5 hypothetical protein compare
MPMX20_04053 +2.0 1.5 DnaA initiator-associating protein DiaA compare
MPMX20_03272 +1.9 2.1 Intermembrane phospholipid transport system lipoprotein MlaA compare
MPMX20_02035 +1.9 3.6 Fumarate and nitrate reduction regulatory protein compare
MPMX20_03756 +1.9 1.3 FAD assembly factor SdhE compare
MPMX20_02794 +1.8 1.9 hypothetical protein compare
MPMX20_04340 +1.8 3.2 Cell division ATP-binding protein FtsE compare
MPMX20_02469 +1.7 1.9 Phage shock protein D compare
MPMX20_03315 +1.7 2.0 Sulfate transport system permease protein CysW compare
MPMX20_02839 +1.7 9.2 Response regulator UvrY compare
MPMX20_00120 +1.7 6.4 Murein hydrolase activator EnvC compare
MPMX20_00708 +1.7 6.0 Aerobic respiration control protein ArcA compare
MPMX20_02970 +1.7 2.0 Aconitate isomerase compare
MPMX20_00223 +1.6 4.9 DNA-binding protein HU-alpha compare
MPMX20_04536 +1.6 4.1 Cell division protein FtsN compare
MPMX20_01381 +1.6 3.3 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive compare
MPMX20_01153 +1.5 1.9 HTH-type transcriptional activator RhaS compare
MPMX20_04339 +1.5 3.6 Cell division protein FtsX compare
MPMX20_03176 +1.5 4.7 Phosphotransferase RcsD compare
MPMX20_00435 +1.5 2.7 Fumarate reductase subunit C compare
MPMX20_04067 +1.5 4.2 Lipoprotein NlpI compare
MPMX20_00030 +1.5 2.2 hypothetical protein compare
MPMX20_01033 +1.5 1.7 hypothetical protein compare
MPMX20_04422 +1.5 3.5 hypothetical protein compare
MPMX20_02738 +1.5 3.5 RNA chaperone ProQ compare
MPMX20_00542 +1.4 1.7 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX20_02857 +1.4 6.3 Flagellar protein FliT compare
MPMX20_02006 +1.4 1.4 Ion-translocating oxidoreductase complex subunit E compare
MPMX20_04090 +1.4 2.3 putative inner membrane transporter YhbE compare
MPMX20_01800 +1.4 2.1 N-acetyl-D-glucosamine kinase compare
MPMX20_02347 +1.4 6.8 Catabolite repressor/activator compare
MPMX20_03309 +1.4 2.7 Phosphocarrier protein HPr compare
MPMX20_01768 +1.4 2.6 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_03190 +1.3 1.5 hypothetical protein compare
MPMX20_02029 +1.3 3.2 Putative arginine/ornithine antiporter compare
MPMX20_01788 +1.3 1.5 Beta-hexosaminidase compare
MPMX20_02345 +1.3 2.0 hypothetical protein compare
MPMX20_03287 +1.3 2.9 Nucleoside permease NupC compare
MPMX20_03178 +1.2 4.5 Sensor histidine kinase RcsC compare
MPMX20_03831 +1.2 2.3 Transcriptional regulatory protein CitB compare
MPMX20_00441 +1.2 1.5 Phosphatidylserine decarboxylase proenzyme compare
MPMX20_03244 +1.2 2.2 Histidine-binding periplasmic protein compare
MPMX20_03198 +1.2 2.1 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
MPMX20_01549 +1.2 0.8 ATP-binding/permease protein CydD compare
MPMX20_03177 +1.2 4.5 Transcriptional regulatory protein RcsB compare
MPMX20_04595 +1.2 1.3 Glutamine synthetase compare
MPMX20_03386 +1.2 1.0 putative protein YfgJ compare
MPMX20_02393 +1.2 1.1 hypothetical protein compare
MPMX20_00546 +1.2 3.1 hypothetical protein compare
MPMX20_04418 +1.2 4.7 Cellulose synthase catalytic subunit [UDP-forming] compare
MPMX20_02826 +1.2 1.3 Cold shock-like protein CspB compare
MPMX20_04619 +1.2 1.6 D-ribose pyranase compare
MPMX20_03135 +1.1 1.9 hypothetical protein compare
MPMX20_00979 +1.1 2.4 putative protein YaiA compare
MPMX20_00326 +1.1 1.4 hypothetical protein compare
MPMX20_04239 +1.1 1.9 Transcriptional regulator DauR compare
MPMX20_00222 +1.1 2.8 hypothetical protein compare
MPMX20_02512 +1.1 2.4 Tryptophan biosynthesis protein TrpCF compare
MPMX20_02134 +1.1 1.1 hypothetical protein compare
MPMX20_04292 +1.1 5.6 Transcriptional regulatory protein OmpR compare
MPMX20_01031 +1.0 1.2 DNA-binding protein HU-beta compare
MPMX20_00010 +1.0 1.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX20_03562 +1.0 2.0 Transcriptional repressor MprA compare
MPMX20_03036 +1.0 3.2 Putative acetyltransferase compare
MPMX20_00810 +1.0 2.3 hypothetical protein compare
MPMX20_04714 +1.0 8.3 hypothetical protein compare
MPMX20_02436 +1.0 2.0 hypothetical protein compare
MPMX20_00385 +1.0 2.8 hypothetical protein compare
MPMX20_02004 +1.0 2.9 Dipeptide and tripeptide permease A compare
MPMX20_00882 +1.0 2.1 D-methionine transport system permease protein MetI compare
MPMX20_03570 +1.0 1.9 Fructose-1-phosphate phosphatase YqaB compare
MPMX20_01839 +1.0 2.8 hypothetical protein compare
MPMX20_04459 +1.0 2.0 Phospholipase A1 compare
MPMX20_00731 +1.0 2.0 hypothetical protein compare
MPMX20_03621 +1.0 1.4 Phenolic acid decarboxylase compare
MPMX20_02363 +1.0 2.1 Peroxiredoxin OsmC compare
MPMX20_03517 +1.0 1.4 hypothetical protein compare
MPMX20_03418 +0.9 1.4 putative 3-phenylpropionic acid transporter compare
MPMX20_03074 +0.9 2.0 Ribokinase compare
MPMX20_04415 +0.9 4.3 Cellulose synthase operon protein C compare
MPMX20_03932 +0.9 2.4 hypothetical protein compare
MPMX20_01890 +0.9 1.8 hypothetical protein compare
MPMX20_00968 +0.9 1.6 hypothetical protein compare
MPMX20_04420 +0.9 6.4 Protein YhjR compare
MPMX20_01185 +0.9 1.8 hypothetical protein compare
MPMX20_04191 +0.9 2.7 DNA topoisomerase 1 compare
MPMX20_02747 +0.9 2.3 Inner membrane protein YebZ compare
MPMX20_00793 +0.9 1.9 DNA gyrase inhibitor YacG compare
MPMX20_02049 +0.9 1.5 Arylamine N-acetyltransferase compare
MPMX20_03915 +0.9 1.5 hypothetical protein compare
MPMX20_00825 +0.9 0.9 Aspartate 1-decarboxylase compare
MPMX20_00550 +0.9 1.6 Toxin-antitoxin biofilm protein TabA compare
MPMX20_04421 +0.9 6.6 Cyclic di-GMP binding protein BcsE compare
MPMX20_00571 +0.9 2.9 hypothetical protein compare
MPMX20_00867 +0.9 1.7 Ribonuclease HII compare
MPMX20_00523 +0.9 1.9 hypothetical protein compare
MPMX20_03598 +0.9 2.1 Iron-sulfur protein compare
MPMX20_01906 +0.9 3.3 Anti-FlhC(2)FlhD(4) factor YdiV compare
MPMX20_00136 +0.9 0.8 hypothetical protein compare
MPMX20_01722 +0.9 1.4 putative csgAB operon transcriptional regulatory protein compare
MPMX20_03099 +0.9 2.6 Glycine betaine-binding protein YehZ compare
MPMX20_01995 +0.9 1.2 Transcriptional regulator SlyA compare
MPMX20_00606 +0.9 3.0 hypothetical protein compare
MPMX20_03136 +0.9 2.7 Elongation factor P-like protein compare
MPMX20_01686 +0.8 1.1 putative HTH-type transcriptional regulator YybR compare
MPMX20_01450 +0.8 1.2 Multidrug export protein EmrB compare
MPMX20_03379 +0.8 1.7 Putative NADP-dependent oxidoreductase YfmJ compare
MPMX20_04456 +0.8 2.1 Homoserine/homoserine lactone efflux protein compare
MPMX20_04589 +0.8 2.8 Sulfoquinovose isomerase compare
MPMX20_03377 +0.8 2.5 hypothetical protein compare
MPMX20_01616 +0.8 0.9 Heat shock protein HspQ compare
MPMX20_03318 +0.8 2.0 Dye-decolorizing peroxidase YfeX compare
MPMX20_02233 +0.8 1.8 Ribosomal-protein-serine acetyltransferase compare
MPMX20_01028 +0.8 0.8 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_03070 +0.8 1.9 putative lipid kinase YegS compare
MPMX20_03328 +0.8 3.0 GDP-mannose pyrophosphatase NudK compare
MPMX20_00369 +0.8 1.3 hypothetical protein compare
MPMX20_01917 +0.8 1.7 Hemin transport protein HemS compare
MPMX20_03156 +0.8 2.2 hypothetical protein compare
MPMX20_03316 +0.8 1.2 Sulfate transport system permease protein CysT compare
MPMX20_03436 +0.8 1.7 DNA repair protein RecO compare
MPMX20_04573 +0.8 2.1 hypothetical protein compare
MPMX20_02269 +0.8 2.4 Succinate semialdehyde dehydrogenase [NAD(P)+] Sad compare
MPMX20_03229 +0.8 1.4 Apulose-4-phosphate transketolase subunit A compare
MPMX20_02792 +0.8 4.7 hypothetical protein compare
MPMX20_04012 +0.8 1.7 Inner membrane protein YhaH compare
MPMX20_02241 +0.8 2.2 HTH-type transcriptional activator RhaS compare
MPMX20_01281 +0.8 1.9 hypothetical protein compare
MPMX20_02487 +0.8 4.6 Exoribonuclease 2 compare
MPMX20_00459 +0.8 1.3 HTH-type transcriptional repressor NsrR compare
MPMX20_03967 +0.8 1.9 hypothetical protein compare
MPMX20_00063 +0.8 2.1 Lipoprotein 28 compare
MPMX20_00072 +0.8 2.1 5-hydroxyisourate hydrolase compare
MPMX20_03732 +0.7 2.3 Mannose-6-phosphate isomerase compare
MPMX20_03006 +0.7 2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_01283 +0.7 1.9 Cold shock-like protein CspE compare
MPMX20_04517 +0.7 3.4 HTH-type transcriptional repressor FabR compare
MPMX20_03785 +0.7 2.2 L-aspartate dehydrogenase compare
MPMX20_04336 +0.7 2.8 Leu/Ile/Val-binding protein compare
MPMX20_01791 +0.7 2.2 hypothetical protein compare
MPMX20_03885 +0.7 1.6 4,5-DOPA dioxygenase extradiol compare
MPMX20_02668 +0.7 1.0 hypothetical protein compare
MPMX20_04419 +0.7 3.3 Cellulose biosynthesis protein BcsQ compare
MPMX20_03455 +0.7 0.7 hypothetical protein compare
MPMX20_02647 +0.7 3.2 hypothetical protein compare
MPMX20_00513 +0.7 2.6 hypothetical protein compare
MPMX20_01509 +0.7 1.4 hypothetical protein compare
MPMX20_00431 +0.7 2.4 Outer membrane lipoprotein Blc compare
MPMX20_02626 +0.7 2.0 Protein YchN compare
MPMX20_01708 +0.7 2.0 Deferrochelatase/peroxidase EfeB compare
MPMX20_02464 +0.7 2.2 L-threonine 3-dehydrogenase compare
MPMX20_04275 +0.7 0.9 Ribulose-phosphate 3-epimerase compare
MPMX20_03971 +0.7 2.1 hypothetical protein compare
MPMX20_04497 +0.7 2.6 HTH-type transcriptional regulator GltC compare
MPMX20_04132 +0.7 2.7 Stringent starvation protein B compare
MPMX20_00345 +0.7 3.2 hypothetical protein compare
MPMX20_00745 +0.7 1.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_02677 +0.7 2.3 hypothetical protein compare
MPMX20_01488 +0.7 1.3 hypothetical protein compare
MPMX20_00893 +0.7 1.3 Inner membrane transport protein YdhP compare
MPMX20_00798 +0.7 1.8 Type II secretion system protein E compare
MPMX20_00159 +0.7 2.6 Periplasmic alpha-amylase compare
MPMX20_00559 +0.7 1.9 hypothetical protein compare
MPMX20_01847 +0.7 1.8 Chitinase A1 compare
MPMX20_03859 +0.7 2.1 Cell division protein FtsP compare
MPMX20_02735 +0.7 1.7 Riboflavin transporter RibZ compare
MPMX20_04372 +0.7 2.6 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
MPMX20_01118 +0.7 0.3 hypothetical protein compare
MPMX20_03879 +0.7 2.0 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MPMX20_00213 +0.7 1.4 Thiazole synthase compare
MPMX20_03045 +0.7 1.9 hypothetical protein compare
MPMX20_04335 +0.7 1.5 PanD regulatory factor compare
MPMX20_01331 +0.7 2.5 putative protein YbfE compare
MPMX20_03341 +0.7 2.0 Glycine cleavage system transcriptional repressor compare
MPMX20_00841 +0.7 2.3 H(+)/Cl(-) exchange transporter ClcA compare
MPMX20_02793 +0.7 2.7 hypothetical protein compare
MPMX20_02570 +0.7 1.5 Universal stress protein F compare
MPMX20_04615 +0.7 4.0 Ribokinase compare
MPMX20_03161 +0.7 2.1 hypothetical protein compare
MPMX20_03806 +0.7 1.4 hypothetical protein compare
MPMX20_01700 +0.7 1.6 HTH-type transcriptional regulator RutR compare
MPMX20_02019 +0.7 2.2 Protein YdgA compare
MPMX20_04664 +0.6 1.3 hypothetical protein compare
MPMX20_04734 +0.6 1.7 hypothetical protein compare
MPMX20_02694 +0.6 2.9 Flagellar brake protein YcgR compare
MPMX20_01466 +0.6 2.2 Molybdopterin-synthase adenylyltransferase compare
MPMX20_01646 +0.6 2.0 hypothetical protein compare
MPMX20_00006 +0.6 2.7 Alcohol dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Bacillus zanthoxyli TBS_046 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct in Enterobacter sp. TBS_079

For mixed community Mixed culture; Bacillus zanthoxyli TBS_046 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms