Experiment set5S513 for Enterobacter sp. TBS_079

Compare to:

1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

200 most important genes:

  gene name fitness t score description  
MPMX20_03678 -4.4 -1.2 tRNA-Met compare
MPMX20_01972 -4.2 -1.2 tRNA-Val compare
MPMX20_04768 -3.9 -4.7 hypothetical protein compare
MPMX20_03986 -3.6 -3.5 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_03264 -3.6 -4.9 Chorismate synthase compare
MPMX20_02591 -3.5 -5.9 DNA-binding protein H-NS compare
MPMX20_02020 -3.4 -13.7 Mannose-6-phosphate isomerase compare
MPMX20_00108 -3.4 -18.7 hypothetical protein compare
MPMX20_00831 -3.3 -5.5 RNA polymerase-binding transcription factor DksA compare
MPMX20_03018 -3.3 -2.3 hypothetical protein compare
MPMX20_03386 -3.2 -0.9 putative protein YfgJ compare
MPMX20_04194 -3.2 -1.2 Peptide deformylase compare
MPMX20_01950 -3.1 -2.1 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_00109 -3.1 -19.2 hypothetical protein compare
MPMX20_04374 -3.0 -3.9 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_01368 -3.0 -2.1 hypothetical protein compare
MPMX20_03019 -3.0 -13.7 hypothetical protein compare
MPMX20_03017 -2.9 -9.3 hypothetical protein compare
MPMX20_04442 -2.9 -2.8 Sec-independent protein translocase protein TatC compare
MPMX20_04530 -2.8 -9.5 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_03210 -2.8 -3.3 NADH-quinone oxidoreductase subunit J compare
MPMX20_00105 -2.8 -13.3 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04440 -2.7 -1.5 Transcription antitermination protein RfaH compare
MPMX20_04489 -2.7 -15.5 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_01356 -2.7 -7.6 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_01097 -2.7 -4.9 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03354 -2.7 -5.6 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03208 -2.6 -4.4 NADH-quinone oxidoreductase subunit L compare
MPMX20_00110 -2.6 -16.2 hypothetical protein compare
MPMX20_03016 -2.6 -17.1 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_01367 -2.5 -3.0 Tol-Pal system protein TolR compare
MPMX20_04650 -2.5 -1.7 tRNA modification GTPase MnmE compare
MPMX20_04443 -2.5 -2.9 Sec-independent protein translocase protein TatB compare
MPMX20_03021 -2.5 -6.4 hypothetical protein compare
MPMX20_03216 -2.5 -6.8 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03215 -2.5 -1.7 NADH-quinone oxidoreductase subunit E compare
MPMX20_03020 -2.5 -8.0 hypothetical protein compare
MPMX20_01334 -2.5 -7.3 Phosphoglucomutase compare
MPMX20_03015 -2.4 -17.9 Phosphoglucosamine mutase compare
MPMX20_03090 -2.4 -0.9 Methionine--tRNA ligase compare
MPMX20_04110 -2.4 -2.4 Nitrogen regulatory protein compare
MPMX20_03207 -2.4 -3.3 NADH-quinone oxidoreductase subunit M compare
MPMX20_01357 -2.4 -3.8 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03213 -2.4 -5.7 NADH-quinone oxidoreductase subunit G compare
MPMX20_02646 -2.4 -1.3 hypothetical protein compare
MPMX20_02576 -2.4 -1.6 Protein TonB compare
MPMX20_02997 -2.3 -6.4 Exodeoxyribonuclease I compare
MPMX20_04730 -2.3 -5.7 hypothetical protein compare
MPMX20_04427 -2.3 -0.9 5S ribosomal RNA compare
MPMX20_00899 -2.2 -1.3 Ribonuclease HI compare
MPMX20_03212 -2.1 -4.1 NADH-quinone oxidoreductase subunit H compare
MPMX20_04375 -2.1 -6.8 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_03409 -2.1 -1.5 Iron-binding protein IscA compare
MPMX20_04518 -2.1 -4.2 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_03479 -2.1 -1.6 30S ribosomal protein S16 compare
MPMX20_02768 -2.1 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_02770 -2.1 -3.6 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_03385 -2.1 -3.9 hypothetical protein compare
MPMX20_04465 -2.1 -3.4 Tyrosine recombinase XerC compare
MPMX20_01019 -2.1 -3.9 Protoheme IX farnesyltransferase compare
MPMX20_01351 -2.0 -2.9 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_03629 -2.0 -2.6 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_01567 -2.0 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_02896 -2.0 -10.5 Lysozyme RrrD compare
MPMX20_04483 -2.0 -1.4 Lipid III flippase compare
MPMX20_00764 -2.0 -0.9 hypothetical protein compare
MPMX20_02879 -2.0 -2.9 hypothetical protein compare
MPMX20_00225 -2.0 -6.0 Phosphoribosylamine--glycine ligase compare
MPMX20_00226 -2.0 -5.4 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00106 -2.0 -1.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03851 -1.9 -6.3 Biopolymer transport protein ExbB compare
MPMX20_04532 -1.9 -1.8 Met repressor compare
MPMX20_04463 -1.9 -4.6 DNA helicase II compare
MPMX20_02767 -1.9 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03214 -1.9 -5.5 NADH-quinone oxidoreductase subunit F compare
MPMX20_01020 -1.9 -1.2 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_04140 -1.9 -5.5 Malate dehydrogenase compare
MPMX20_04467 -1.9 -4.6 Diaminopimelate epimerase compare
MPMX20_04556 -1.9 -5.6 Transcriptional regulatory protein CpxR compare
MPMX20_03154 -1.9 -5.8 Inner membrane protein YejM compare
MPMX20_03209 -1.9 -2.2 NADH-quinone oxidoreductase subunit K compare
MPMX20_03211 -1.9 -3.1 NADH-quinone oxidoreductase subunit I compare
MPMX20_04377 -1.8 -7.4 putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD compare
MPMX20_01542 -1.8 -2.0 Cold shock-like protein CspD compare
MPMX20_04253 -1.8 -0.7 Malonate decarboxylase acyl carrier protein compare
MPMX20_02701 -1.8 -1.2 Fatty acid metabolism regulator protein compare
MPMX20_03022 -1.7 -1.2 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_01098 -1.7 -2.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01354 -1.7 -1.1 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_00102 -1.7 -1.2 hypothetical protein compare
MPMX20_01765 -1.7 -2.4 Ribonuclease E compare
MPMX20_00241 -1.7 -6.2 Glucose-6-phosphate isomerase compare
MPMX20_01005 -1.7 -2.3 Transcriptional repressor NrdR compare
MPMX20_00693 -1.7 -4.4 Phosphoserine phosphatase compare
MPMX20_01366 -1.6 -2.5 Tol-Pal system protein TolQ compare
MPMX20_02287 -1.6 -1.9 hypothetical protein compare
MPMX20_01369 -1.6 -4.6 Tol-Pal system protein TolB compare
MPMX20_01552 -1.6 -1.1 hypothetical protein compare
MPMX20_00838 -1.6 -4.7 Iron(3+)-hydroxamate-binding protein FhuD compare
MPMX20_04170 -1.6 -1.5 DNA-binding protein Fis compare
MPMX20_04444 -1.6 -0.9 Sec-independent protein translocase protein TatA compare
MPMX20_01352 -1.6 -4.6 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_02696 -1.6 -4.0 Murein tetrapeptide carboxypeptidase compare
MPMX20_01068 -1.6 -1.9 hypothetical protein compare
MPMX20_00747 -1.6 -3.1 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_04626 -1.6 -2.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01478 -1.6 -4.3 Deoxyribose operon repressor compare
MPMX20_02893 -1.6 -3.5 hypothetical protein compare
MPMX20_01370 -1.6 -2.0 Peptidoglycan-associated lipoprotein compare
MPMX20_02393 -1.5 -0.6 hypothetical protein compare
MPMX20_04141 -1.5 -3.5 Arginine repressor compare
MPMX20_03447 -1.5 -5.2 ATP-dependent RNA helicase SrmB compare
MPMX20_02918 -1.5 -3.7 hypothetical protein compare
MPMX20_03407 -1.5 -1.0 Chaperone protein HscA compare
MPMX20_03396 -1.5 -3.9 Nucleoside diphosphate kinase compare
MPMX20_02913 -1.5 -1.2 hypothetical protein compare
MPMX20_03047 -1.5 -3.4 dCTP deaminase compare
MPMX20_02885 -1.5 -5.6 hypothetical protein compare
MPMX20_02216 -1.5 -2.1 hypothetical protein compare
MPMX20_01323 -1.5 -5.9 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX20_00419 -1.5 -6.2 Aspartate ammonia-lyase compare
MPMX20_01472 -1.5 -4.2 Glutathione transport system permease protein GsiD compare
MPMX20_00728 -1.5 -1.0 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase compare
MPMX20_02882 -1.5 -4.9 hypothetical protein compare
MPMX20_04731 -1.5 -4.8 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_02897 -1.5 -3.2 hypothetical protein compare
MPMX20_00570 -1.5 -9.1 putative BsuMI modification methylase subunit YdiO compare
MPMX20_02926 -1.5 -3.4 hypothetical protein compare
MPMX20_03338 -1.4 -3.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_01349 -1.4 -3.1 Citrate synthase compare
MPMX20_02898 -1.4 -6.8 hypothetical protein compare
MPMX20_03850 -1.4 -2.5 Biopolymer transport protein ExbD compare
MPMX20_03206 -1.4 -4.8 NADH-quinone oxidoreductase subunit N compare
MPMX20_01695 -1.4 -1.9 putative malonic semialdehyde reductase RutE compare
MPMX20_02916 -1.4 -4.7 hypothetical protein compare
MPMX20_04189 -1.4 -3.1 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_02149 -1.4 -3.7 3-hydroxyadipyl-CoA dehydrogenase compare
MPMX20_00456 -1.4 -4.5 Modulator of FtsH protease HflC compare
MPMX20_02886 -1.4 -5.4 hypothetical protein compare
MPMX20_04133 -1.4 -2.9 Stringent starvation protein A compare
MPMX20_02341 -1.4 -2.3 hypothetical protein compare
MPMX20_01837 -1.4 -2.2 hypothetical protein compare
MPMX20_01350 -1.3 -2.2 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_02903 -1.3 -1.7 hypothetical protein compare
MPMX20_00086 -1.3 -2.2 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_02204 -1.3 -2.9 hypothetical protein compare
MPMX20_02766 -1.3 -1.6 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02672 -1.3 -9.5 hypothetical protein compare
MPMX20_03426 -1.3 -6.6 Phosphoribosylformylglycinamidine synthase compare
MPMX20_03674 -1.3 -1.7 Sulfur acceptor protein CsdE compare
MPMX20_03174 -1.3 -2.6 FAD:protein FMN transferase compare
MPMX20_01413 -1.3 -2.0 Molybdopterin synthase sulfur carrier subunit compare
MPMX20_03267 -1.3 -1.9 Phosphohistidine phosphatase SixA compare
MPMX20_03686 -1.3 -1.0 hypothetical protein compare
MPMX20_01156 -1.3 -2.4 hypothetical protein compare
MPMX20_00156 -1.3 -6.2 DNA-binding transcriptional repressor YiaJ compare
MPMX20_02593 -1.3 -7.2 Regulator of RpoS compare
MPMX20_02892 -1.3 -7.1 hypothetical protein compare
MPMX20_02908 -1.3 -4.9 hypothetical protein compare
MPMX20_04028 -1.3 -1.3 hypothetical protein compare
MPMX20_04301 -1.3 -2.2 Fe/S biogenesis protein NfuA compare
MPMX20_02919 -1.3 -2.7 hypothetical protein compare
MPMX20_00998 -1.3 -1.3 Sec translocon accessory complex subunit YajC compare
MPMX20_00807 -1.3 -1.2 Pyruvate dehydrogenase E1 component compare
MPMX20_01851 -1.3 -3.1 Putative NAD(P)H nitroreductase YdjA compare
MPMX20_02917 -1.3 -2.0 hypothetical protein compare
MPMX20_04043 -1.3 -1.7 hypothetical protein compare
MPMX20_00494 -1.2 -0.9 hypothetical protein compare
MPMX20_03571 -1.2 -0.9 tRNA-Arg compare
MPMX20_03217 -1.2 -2.6 NADH-quinone oxidoreductase subunit B compare
MPMX20_03753 -1.2 -3.2 Tyrosine recombinase XerD compare
MPMX20_02920 -1.2 -3.4 hypothetical protein compare
MPMX20_03742 -1.2 -3.7 HTH-type transcriptional regulator GalR compare
MPMX20_01333 -1.2 -3.2 Negative modulator of initiation of replication compare
MPMX20_04670 -1.2 -1.4 hypothetical protein compare
MPMX20_03695 -1.2 -1.9 putative lipoprotein YgdR compare
MPMX20_02050 -1.2 -3.5 hypothetical protein compare
MPMX20_02518 -1.2 -2.9 hypothetical protein compare
MPMX20_00739 -1.2 -1.8 Carbamoyl-phosphate synthase small chain compare
MPMX20_04137 -1.2 -2.2 Inner membrane protein YhcB compare
MPMX20_02478 -1.2 -3.1 Putrescine export system ATP-binding protein SapF compare
MPMX20_03163 -1.2 -1.2 hypothetical protein compare
MPMX20_02899 -1.2 -1.7 hypothetical protein compare
MPMX20_01070 -1.2 -2.4 Inner membrane protein YbaN compare
MPMX20_01927 -1.2 -2.5 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX20_01740 -1.2 -2.6 DNA damage-inducible protein I compare
MPMX20_02116 -1.2 -1.9 hypothetical protein compare
MPMX20_01607 -1.2 -3.3 Outer membrane protein A compare
MPMX20_03247 -1.1 -2.9 Amidophosphoribosyltransferase compare
MPMX20_03310 -1.1 -1.5 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_02877 -1.1 -5.8 hypothetical protein compare
MPMX20_00816 -1.1 -2.3 hypothetical protein compare
MPMX20_03767 -1.1 -2.5 Xaa-Pro aminopeptidase compare
MPMX20_04306 -1.1 -2.2 Glycerol-3-phosphate regulon repressor compare
MPMX20_03590 -1.1 -1.4 hypothetical protein compare
MPMX20_04279 -1.1 -1.5 Shikimate kinase 1 compare
MPMX20_01908 -1.1 -2.3 D-beta-hydroxybutyrate dehydrogenase compare
MPMX20_03756 -1.1 -1.7 FAD assembly factor SdhE compare
MPMX20_01286 -1.1 -0.6 Sec-independent protein translocase protein TatE compare
MPMX20_01085 -1.1 -2.2 HTH-type transcriptional regulator CueR compare


Specific Phenotypes

For 3 genes in this experiment

For mixed community Mixed culture; Bacillus zanthoxyli TBS_046 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct in Enterobacter sp. TBS_079

For mixed community Mixed culture; Bacillus zanthoxyli TBS_046 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms