Experiment set5S510 for Enterobacter sp. TBS_079

Compare to:

M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2

200 most important genes:

  gene name fitness t score description  
MPMX20_03986 -4.9 -2.5 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_01446 -4.7 -1.7 Small protein MntS compare
MPMX20_04243 -4.3 -0.9 hypothetical protein compare
MPMX20_03479 -4.3 -1.6 30S ribosomal protein S16 compare
MPMX20_04768 -4.1 -2.8 hypothetical protein compare
MPMX20_01648 -4.0 -1.2 hypothetical protein compare
MPMX20_03850 -3.9 -2.5 Biopolymer transport protein ExbD compare
MPMX20_00831 -3.9 -4.7 RNA polymerase-binding transcription factor DksA compare
MPMX20_04427 -3.9 -0.8 5S ribosomal RNA compare
MPMX20_01952 -3.8 -0.8 hypothetical protein compare
MPMX20_00998 -3.8 -2.1 Sec translocon accessory complex subunit YajC compare
MPMX20_01101 -3.8 -1.5 Peptidyl-prolyl cis-trans isomerase B compare
MPMX20_03687 -3.7 -1.5 hypothetical protein compare
MPMX20_02591 -3.6 -6.1 DNA-binding protein H-NS compare
MPMX20_03017 -3.5 -10.7 hypothetical protein compare
MPMX20_03020 -3.5 -7.8 hypothetical protein compare
MPMX20_03211 -3.4 -2.4 NADH-quinone oxidoreductase subunit I compare
MPMX20_03386 -3.4 -0.7 putative protein YfgJ compare
MPMX20_02344 -3.4 -1.2 hypothetical protein compare
MPMX20_01020 -3.4 -1.0 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_01351 -3.4 -1.8 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_01958 -3.4 -0.7 Fumarase D compare
MPMX20_02913 -3.3 -1.2 hypothetical protein compare
MPMX20_04344 -3.3 -1.2 hypothetical protein compare
MPMX20_00105 -3.2 -11.9 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_03018 -3.2 -2.2 hypothetical protein compare
MPMX20_00108 -3.2 -18.0 hypothetical protein compare
MPMX20_03019 -3.2 -13.8 hypothetical protein compare
MPMX20_04530 -3.1 -11.6 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_00109 -3.1 -18.4 hypothetical protein compare
MPMX20_00110 -3.1 -18.3 hypothetical protein compare
MPMX20_02020 -3.1 -9.4 Mannose-6-phosphate isomerase compare
MPMX20_01950 -3.1 -2.1 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03509 -3.0 -0.9 hypothetical protein compare
MPMX20_02768 -3.0 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_00388 -3.0 -0.6 hypothetical protein compare
MPMX20_03851 -3.0 -8.0 Biopolymer transport protein ExbB compare
MPMX20_03208 -3.0 -3.5 NADH-quinone oxidoreductase subunit L compare
MPMX20_04279 -2.9 -1.7 Shikimate kinase 1 compare
MPMX20_03385 -2.9 -3.1 hypothetical protein compare
MPMX20_04242 -2.9 -1.6 hypothetical protein compare
MPMX20_04489 -2.9 -13.3 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_01722 -2.8 -1.2 putative csgAB operon transcriptional regulatory protein compare
MPMX20_04443 -2.8 -2.4 Sec-independent protein translocase protein TatB compare
MPMX20_01616 -2.8 -0.8 Heat shock protein HspQ compare
MPMX20_03210 -2.8 -3.3 NADH-quinone oxidoreductase subunit J compare
MPMX20_03153 -2.8 -1.0 hypothetical protein compare
MPMX20_03354 -2.8 -5.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_01368 -2.8 -2.4 hypothetical protein compare
MPMX20_03264 -2.7 -4.5 Chorismate synthase compare
MPMX20_01816 -2.7 -1.9 High frequency lysogenization protein HflD compare
MPMX20_04650 -2.6 -1.8 tRNA modification GTPase MnmE compare
MPMX20_00453 -2.6 -1.2 RNA-binding protein Hfq compare
MPMX20_03248 -2.6 -3.5 Colicin V production protein compare
MPMX20_03216 -2.6 -7.3 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_01334 -2.6 -7.1 Phosphoglucomutase compare
MPMX20_01333 -2.6 -4.4 Negative modulator of initiation of replication compare
MPMX20_03756 -2.6 -2.9 FAD assembly factor SdhE compare
MPMX20_01286 -2.6 -0.9 Sec-independent protein translocase protein TatE compare
MPMX20_01366 -2.5 -1.6 Tol-Pal system protein TolQ compare
MPMX20_03021 -2.5 -6.4 hypothetical protein compare
MPMX20_00197 -2.5 -0.9 tRNA-Tyr compare
MPMX20_02496 -2.5 -0.7 Lipopolysaccharide assembly protein A compare
MPMX20_04466 -2.5 -3.4 hypothetical protein compare
MPMX20_00136 -2.4 -0.7 hypothetical protein compare
MPMX20_03488 -2.4 -1.9 Persistence and stress-resistance antitoxin PasI compare
MPMX20_04518 -2.4 -4.0 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_04692 -2.4 -1.0 hypothetical protein compare
MPMX20_00107 -2.4 -6.6 Lipopolysaccharide core heptosyltransferase RfaQ compare
MPMX20_03405 -2.3 -1.1 Protein IscX compare
MPMX20_00643 -2.3 -2.9 HTH-type transcriptional regulator FarR compare
MPMX20_01367 -2.3 -3.8 Tol-Pal system protein TolR compare
MPMX20_00176 -2.3 -2.8 Cold shock protein CspA compare
MPMX20_01355 -2.2 -0.5 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_04626 -2.2 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01972 -2.2 -0.8 tRNA-Val compare
MPMX20_04442 -2.2 -3.9 Sec-independent protein translocase protein TatC compare
MPMX20_03338 -2.2 -3.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_03016 -2.2 -9.0 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_00086 -2.1 -2.4 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_03247 -2.1 -4.0 Amidophosphoribosyltransferase compare
MPMX20_04483 -2.1 -1.4 Lipid III flippase compare
MPMX20_03207 -2.1 -4.0 NADH-quinone oxidoreductase subunit M compare
MPMX20_03202 -2.0 -2.1 Protein ElaB compare
MPMX20_04241 -2.0 -1.8 Protein SlyX compare
MPMX20_00226 -2.0 -5.6 Bifunctional purine biosynthesis protein PurH compare
MPMX20_01586 -2.0 -5.4 Aspartate aminotransferase compare
MPMX20_04306 -2.0 -3.9 Glycerol-3-phosphate regulon repressor compare
MPMX20_04465 -2.0 -4.1 Tyrosine recombinase XerC compare
MPMX20_03738 -2.0 -3.7 PTS system oligo-beta-mannoside-specific EIIB component compare
MPMX20_04140 -2.0 -5.6 Malate dehydrogenase compare
MPMX20_03856 -1.9 -4.7 2,5-diketo-D-gluconic acid reductase A compare
MPMX20_04133 -1.9 -2.6 Stringent starvation protein A compare
MPMX20_03047 -1.9 -3.7 dCTP deaminase compare
MPMX20_03015 -1.9 -11.3 Phosphoglucosamine mutase compare
MPMX20_03571 -1.9 -0.9 tRNA-Arg compare
MPMX20_03206 -1.9 -5.1 NADH-quinone oxidoreductase subunit N compare
MPMX20_02927 -1.9 -5.5 hypothetical protein compare
MPMX20_01098 -1.9 -2.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01097 -1.9 -4.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03773 -1.9 -3.0 HTH-type transcriptional regulator ArgP compare
MPMX20_03214 -1.8 -4.6 NADH-quinone oxidoreductase subunit F compare
MPMX20_00739 -1.8 -1.3 Carbamoyl-phosphate synthase small chain compare
MPMX20_00255 -1.8 -3.7 Chorismate pyruvate-lyase compare
MPMX20_04670 -1.8 -1.3 hypothetical protein compare
MPMX20_00241 -1.8 -6.2 Glucose-6-phosphate isomerase compare
MPMX20_04444 -1.8 -0.8 Sec-independent protein translocase protein TatA compare
MPMX20_00106 -1.8 -2.5 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_04012 -1.8 -3.5 Inner membrane protein YhaH compare
MPMX20_02701 -1.8 -1.0 Fatty acid metabolism regulator protein compare
MPMX20_02576 -1.8 -2.3 Protein TonB compare
MPMX20_04276 -1.8 -1.2 DNA adenine methylase compare
MPMX20_02633 -1.8 -2.3 hypothetical protein compare
MPMX20_01354 -1.8 -0.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_02997 -1.8 -6.0 Exodeoxyribonuclease I compare
MPMX20_00806 -1.8 -2.9 Pyruvate dehydrogenase complex repressor compare
MPMX20_01567 -1.7 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04099 -1.7 -3.1 Intermembrane phospholipid transport system binding protein MlaD compare
MPMX20_01118 -1.7 -0.5 hypothetical protein compare
MPMX20_00123 -1.7 -1.8 Glutaredoxin 3 compare
MPMX20_00102 -1.7 -1.2 hypothetical protein compare
MPMX20_01858 -1.7 -2.0 Inner membrane protein YnjF compare
MPMX20_03490 -1.7 -3.0 SsrA-binding protein compare
MPMX20_01550 -1.7 -1.0 Thioredoxin reductase compare
MPMX20_04552 -1.7 -3.3 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_01356 -1.7 -5.0 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_04585 -1.7 -3.5 HTH-type transcriptional repressor CsqR compare
MPMX20_03132 -1.7 -4.5 Tagatose-6-phosphate kinase compare
MPMX20_03212 -1.7 -3.1 NADH-quinone oxidoreductase subunit H compare
MPMX20_02598 -1.7 -1.3 tRNA-Tyr compare
MPMX20_04110 -1.7 -3.2 Nitrogen regulatory protein compare
MPMX20_02157 -1.7 -1.6 hypothetical protein compare
MPMX20_00455 -1.7 -4.8 Modulator of FtsH protease HflK compare
MPMX20_04731 -1.6 -3.9 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_04467 -1.6 -4.1 Diaminopimelate epimerase compare
MPMX20_03740 -1.6 -2.4 PTS system N,N'-diacetylchitobiose-specific EIIA component compare
MPMX20_01352 -1.6 -5.1 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_03969 -1.6 -2.5 hypothetical protein compare
MPMX20_03209 -1.6 -1.6 NADH-quinone oxidoreductase subunit K compare
MPMX20_03409 -1.6 -1.2 Iron-binding protein IscA compare
MPMX20_02590 -1.6 -7.0 Thymidine kinase compare
MPMX20_04730 -1.6 -3.2 hypothetical protein compare
MPMX20_03447 -1.6 -4.5 ATP-dependent RNA helicase SrmB compare
MPMX20_03154 -1.6 -4.1 Inner membrane protein YejM compare
MPMX20_02008 -1.6 -4.3 Ion-translocating oxidoreductase complex subunit D compare
MPMX20_04601 -1.6 -1.6 DNA polymerase I compare
MPMX20_02593 -1.6 -8.1 Regulator of RpoS compare
MPMX20_00712 -1.6 -4.9 Threonine synthase compare
MPMX20_02918 -1.6 -2.8 hypothetical protein compare
MPMX20_03407 -1.6 -1.1 Chaperone protein HscA compare
MPMX20_03753 -1.6 -4.4 Tyrosine recombinase XerD compare
MPMX20_00799 -1.6 -3.9 Fimbrial protein compare
MPMX20_01031 -1.6 -1.2 DNA-binding protein HU-beta compare
MPMX20_02767 -1.6 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_01022 -1.6 -5.7 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_03864 -1.5 -4.6 Sensor protein QseC compare
MPMX20_04189 -1.5 -3.5 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00222 -1.5 -1.8 hypothetical protein compare
MPMX20_04491 -1.5 -3.1 Thioredoxin 1 compare
MPMX20_00570 -1.5 -8.6 putative BsuMI modification methylase subunit YdiO compare
MPMX20_00295 -1.5 -2.3 Formate dehydrogenase H compare
MPMX20_02896 -1.5 -5.5 Lysozyme RrrD compare
MPMX20_04375 -1.5 -3.5 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_00022 -1.5 -1.9 Inner membrane protein YidG compare
MPMX20_00544 -1.5 -2.6 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_02146 -1.5 -3.2 1,2-phenylacetyl-CoA epoxidase, subunit E compare
MPMX20_00213 -1.5 -1.5 Thiazole synthase compare
MPMX20_04687 -1.5 -5.0 hypothetical protein compare
MPMX20_03262 -1.5 -2.8 putative membrane transporter protein YfcA compare
MPMX20_00976 -1.5 -2.2 Pyrroline-5-carboxylate reductase compare
MPMX20_04668 -1.5 -1.3 hypothetical protein compare
MPMX20_01775 -1.5 -3.8 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
MPMX20_03022 -1.4 -2.2 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04297 -1.4 -1.6 putative [Fe-S]-dependent transcriptional repressor FeoC compare
MPMX20_00807 -1.4 -1.0 Pyruvate dehydrogenase E1 component compare
MPMX20_04557 -1.4 -4.7 Sensor histidine kinase CpxA compare
MPMX20_02864 -1.4 -2.4 hypothetical protein compare
MPMX20_00134 -1.4 -5.0 Mannitol-1-phosphate 5-dehydrogenase compare
MPMX20_01001 -1.4 -2.2 hypothetical protein compare
MPMX20_01611 -1.4 -3.7 Inner membrane protein YccF compare
MPMX20_02755 -1.4 -2.0 KHG/KDPG aldolase compare
MPMX20_02341 -1.4 -1.5 hypothetical protein compare
MPMX20_03266 -1.4 -1.7 Endonuclease MutS2 compare
MPMX20_02672 -1.4 -9.3 hypothetical protein compare
MPMX20_03310 -1.4 -1.0 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04119 -1.4 -0.8 DNA polymerase III subunit chi compare
MPMX20_02295 -1.4 -0.8 hypothetical protein compare
MPMX20_04194 -1.4 -0.8 Peptide deformylase compare
MPMX20_01566 -1.4 -4.6 Phosphoserine aminotransferase compare
MPMX20_00745 -1.4 -1.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_00775 -1.4 -1.8 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_02629 -1.4 -3.7 Glutathione-specific gamma-glutamylcyclotransferase compare
MPMX20_03623 -1.4 -2.4 Transcriptional regulator HosA compare
MPMX20_01750 -1.4 -3.4 Negative regulator of flagellin synthesis compare
MPMX20_03217 -1.4 -2.3 NADH-quinone oxidoreductase subunit B compare
MPMX20_00523 -1.4 -2.2 hypothetical protein compare
MPMX20_00711 -1.4 -5.0 Homoserine kinase compare
MPMX20_00386 -1.4 -1.7 hypothetical protein compare
MPMX20_04463 -1.4 -4.5 DNA helicase II compare
MPMX20_04170 -1.3 -1.5 DNA-binding protein Fis compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Rhodococcus aetherivorans MH2 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms