Experiment set5S495 for Enterobacter sp. TBS_079

Compare to:

TSB plate, 1:1 coculture with Rhizobium pusense TBS_045

200 most important genes:

  gene name fitness t score description  
MPMX20_03986 -4.6 -2.9 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_01972 -4.1 -1.1 tRNA-Val compare
MPMX20_02591 -3.9 -4.7 DNA-binding protein H-NS compare
MPMX20_04374 -3.9 -3.6 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_04530 -3.8 -15.6 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01370 -3.7 -2.5 Peptidoglycan-associated lipoprotein compare
MPMX20_04768 -3.4 -2.4 hypothetical protein compare
MPMX20_00108 -3.4 -21.8 hypothetical protein compare
MPMX20_00105 -3.2 -14.4 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04375 -3.2 -5.7 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_03018 -3.1 -2.2 hypothetical protein compare
MPMX20_03019 -3.1 -12.1 hypothetical protein compare
MPMX20_04489 -3.1 -15.9 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_01353 -3.1 -3.6 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_00109 -3.0 -17.7 hypothetical protein compare
MPMX20_03386 -3.0 -0.8 putative protein YfgJ compare
MPMX20_02768 -2.9 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_02696 -2.9 -8.2 Murein tetrapeptide carboxypeptidase compare
MPMX20_00831 -2.9 -5.0 RNA polymerase-binding transcription factor DksA compare
MPMX20_00110 -2.9 -14.8 hypothetical protein compare
MPMX20_01950 -2.9 -2.0 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_04670 -2.8 -1.9 hypothetical protein compare
MPMX20_03209 -2.8 -1.8 NADH-quinone oxidoreductase subunit K compare
MPMX20_01350 -2.7 -3.7 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_02344 -2.7 -1.7 hypothetical protein compare
MPMX20_03153 -2.7 -1.1 hypothetical protein compare
MPMX20_01352 -2.6 -5.8 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_04442 -2.6 -2.5 Sec-independent protein translocase protein TatC compare
MPMX20_03015 -2.5 -18.8 Phosphoglucosamine mutase compare
MPMX20_03756 -2.5 -3.8 FAD assembly factor SdhE compare
MPMX20_02216 -2.5 -3.4 hypothetical protein compare
MPMX20_04440 -2.4 -1.3 Transcription antitermination protein RfaH compare
MPMX20_03020 -2.4 -8.1 hypothetical protein compare
MPMX20_04443 -2.4 -2.5 Sec-independent protein translocase protein TatB compare
MPMX20_03017 -2.4 -9.5 hypothetical protein compare
MPMX20_03016 -2.4 -15.1 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_01334 -2.4 -8.0 Phosphoglucomutase compare
MPMX20_00453 -2.3 -1.3 RNA-binding protein Hfq compare
MPMX20_03021 -2.3 -5.7 hypothetical protein compare
MPMX20_01097 -2.3 -4.8 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_01366 -2.3 -1.6 Tol-Pal system protein TolQ compare
MPMX20_04279 -2.3 -2.2 Shikimate kinase 1 compare
MPMX20_03385 -2.3 -4.8 hypothetical protein compare
MPMX20_03210 -2.2 -3.0 NADH-quinone oxidoreductase subunit J compare
MPMX20_01368 -2.2 -2.6 hypothetical protein compare
MPMX20_00030 -2.2 -1.4 hypothetical protein compare
MPMX20_00197 -2.2 -0.9 tRNA-Tyr compare
MPMX20_02767 -2.2 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03396 -2.2 -3.8 Nucleoside diphosphate kinase compare
MPMX20_03490 -2.2 -3.8 SsrA-binding protein compare
MPMX20_01256 -2.1 -1.7 hypothetical protein compare
MPMX20_03364 -2.1 -1.9 hypothetical protein compare
MPMX20_04377 -2.1 -8.1 putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD compare
MPMX20_04518 -2.1 -3.7 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_01369 -2.0 -3.6 Tol-Pal system protein TolB compare
MPMX20_00899 -2.0 -1.2 Ribonuclease HI compare
MPMX20_01351 -2.0 -2.6 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_04650 -2.0 -2.4 tRNA modification GTPase MnmE compare
MPMX20_01019 -2.0 -5.2 Protoheme IX farnesyltransferase compare
MPMX20_00086 -2.0 -2.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_03354 -2.0 -5.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03211 -2.0 -3.0 NADH-quinone oxidoreductase subunit I compare
MPMX20_01356 -2.0 -6.7 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_03479 -1.9 -1.3 30S ribosomal protein S16 compare
MPMX20_03208 -1.9 -4.0 NADH-quinone oxidoreductase subunit L compare
MPMX20_04141 -1.9 -4.1 Arginine repressor compare
MPMX20_00998 -1.9 -2.2 Sec translocon accessory complex subunit YajC compare
MPMX20_01869 -1.9 -6.0 Succinylglutamate desuccinylase compare
MPMX20_02020 -1.8 -8.6 Mannose-6-phosphate isomerase compare
MPMX20_02997 -1.8 -5.9 Exodeoxyribonuclease I compare
MPMX20_04140 -1.8 -4.6 Malate dehydrogenase compare
MPMX20_01005 -1.8 -2.1 Transcriptional repressor NrdR compare
MPMX20_02672 -1.8 -10.9 hypothetical protein compare
MPMX20_03338 -1.7 -2.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00775 -1.7 -2.1 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_01022 -1.7 -7.4 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_04626 -1.7 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_04467 -1.7 -4.4 Diaminopimelate epimerase compare
MPMX20_01021 -1.7 -2.4 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_03264 -1.7 -3.4 Chorismate synthase compare
MPMX20_03213 -1.7 -4.9 NADH-quinone oxidoreductase subunit G compare
MPMX20_02701 -1.6 -1.1 Fatty acid metabolism regulator protein compare
MPMX20_01367 -1.6 -3.2 Tol-Pal system protein TolR compare
MPMX20_00226 -1.6 -4.5 Bifunctional purine biosynthesis protein PurH compare
MPMX20_03022 -1.6 -1.1 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_02891 -1.6 -8.2 hypothetical protein compare
MPMX20_02668 -1.6 -2.4 hypothetical protein compare
MPMX20_03216 -1.6 -6.3 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03509 -1.6 -0.7 hypothetical protein compare
MPMX20_00107 -1.6 -4.7 Lipopolysaccharide core heptosyltransferase RfaQ compare
MPMX20_03212 -1.6 -3.4 NADH-quinone oxidoreductase subunit H compare
MPMX20_04110 -1.5 -2.7 Nitrogen regulatory protein compare
MPMX20_01354 -1.5 -0.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_04730 -1.5 -2.3 hypothetical protein compare
MPMX20_01765 -1.5 -3.5 Ribonuclease E compare
MPMX20_03753 -1.5 -3.7 Tyrosine recombinase XerD compare
MPMX20_02879 -1.5 -2.1 hypothetical protein compare
MPMX20_04731 -1.5 -4.7 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_03629 -1.5 -2.5 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_03206 -1.5 -4.2 NADH-quinone oxidoreductase subunit N compare
MPMX20_03154 -1.5 -3.6 Inner membrane protein YejM compare
MPMX20_02918 -1.4 -3.4 hypothetical protein compare
MPMX20_01357 -1.4 -3.1 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03394 -1.4 -2.4 Cytoskeleton protein RodZ compare
MPMX20_01952 -1.4 -0.6 hypothetical protein compare
MPMX20_00102 -1.4 -1.0 hypothetical protein compare
MPMX20_03214 -1.4 -4.4 NADH-quinone oxidoreductase subunit F compare
MPMX20_01286 -1.4 -0.7 Sec-independent protein translocase protein TatE compare
MPMX20_03047 -1.4 -3.0 dCTP deaminase compare
MPMX20_00514 -1.4 -2.3 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_02766 -1.4 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_03409 -1.4 -1.4 Iron-binding protein IscA compare
MPMX20_04301 -1.4 -1.7 Fe/S biogenesis protein NfuA compare
MPMX20_04628 -1.4 -1.3 ATP synthase protein I compare
MPMX20_03851 -1.4 -5.6 Biopolymer transport protein ExbB compare
MPMX20_02098 -1.4 -4.7 HTH-type transcriptional repressor RspR compare
MPMX20_02920 -1.4 -6.0 hypothetical protein compare
MPMX20_00419 -1.3 -6.4 Aspartate ammonia-lyase compare
MPMX20_02633 -1.3 -3.4 hypothetical protein compare
MPMX20_02886 -1.3 -6.7 hypothetical protein compare
MPMX20_03951 -1.3 -2.7 hypothetical protein compare
MPMX20_01349 -1.3 -3.5 Citrate synthase compare
MPMX20_03426 -1.3 -6.0 Phosphoribosylformylglycinamidine synthase compare
MPMX20_01750 -1.3 -4.2 Negative regulator of flagellin synthesis compare
MPMX20_00747 -1.3 -2.6 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_00106 -1.3 -2.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03090 -1.3 -0.6 Methionine--tRNA ligase compare
MPMX20_04059 -1.3 -2.2 hypothetical protein compare
MPMX20_02411 -1.3 -3.3 hypothetical protein compare
MPMX20_01333 -1.3 -3.3 Negative modulator of initiation of replication compare
MPMX20_00693 -1.3 -4.4 Phosphoserine phosphatase compare
MPMX20_01567 -1.3 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_00241 -1.3 -5.0 Glucose-6-phosphate isomerase compare
MPMX20_02882 -1.2 -5.5 hypothetical protein compare
MPMX20_00123 -1.2 -1.8 Glutaredoxin 3 compare
MPMX20_04463 -1.2 -3.4 DNA helicase II compare
MPMX20_02896 -1.2 -4.6 Lysozyme RrrD compare
MPMX20_02929 -1.2 -1.6 hypothetical protein compare
MPMX20_00739 -1.2 -1.9 Carbamoyl-phosphate synthase small chain compare
MPMX20_03588 -1.2 -2.2 PTS system glucitol/sorbitol-specific EIIA component compare
MPMX20_03218 -1.2 -1.5 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_00570 -1.2 -7.8 putative BsuMI modification methylase subunit YdiO compare
MPMX20_04112 -1.2 -1.4 Phosphocarrier protein NPr compare
MPMX20_02890 -1.2 -6.3 hypothetical protein compare
MPMX20_02478 -1.2 -2.9 Putrescine export system ATP-binding protein SapF compare
MPMX20_02919 -1.2 -5.2 hypothetical protein compare
MPMX20_03390 -1.2 -3.8 Outer membrane protein assembly factor BamB compare
MPMX20_02899 -1.2 -5.5 hypothetical protein compare
MPMX20_02147 -1.2 -4.0 2,3-dehydroadipyl-CoA hydratase compare
MPMX20_03391 -1.2 -2.3 hypothetical protein compare
MPMX20_03217 -1.2 -2.4 NADH-quinone oxidoreductase subunit B compare
MPMX20_04111 -1.2 -2.2 RNase adapter protein RapZ compare
MPMX20_03207 -1.2 -3.1 NADH-quinone oxidoreductase subunit M compare
MPMX20_03488 -1.2 -1.9 Persistence and stress-resistance antitoxin PasI compare
MPMX20_03308 -1.2 -3.1 Cysteine synthase A compare
MPMX20_01098 -1.1 -2.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_02116 -1.1 -1.5 hypothetical protein compare
MPMX20_04137 -1.1 -2.6 Inner membrane protein YhcB compare
MPMX20_03746 -1.1 -2.3 tRNA-Gly compare
MPMX20_01342 -1.1 -1.6 hypothetical protein compare
MPMX20_02876 -1.1 -3.8 hypothetical protein compare
MPMX20_04038 -1.1 -3.0 Glucitol operon repressor compare
MPMX20_03278 -1.1 -1.2 hypothetical protein compare
MPMX20_00111 -1.1 -6.2 hypothetical protein compare
MPMX20_00812 -1.1 -2.5 Aconitate hydratase B compare
MPMX20_03323 -1.1 -1.8 Oxygen-dependent coproporphyrinogen-III oxidase compare
MPMX20_03376 -1.1 -2.6 HTH-type transcriptional regulator MurR compare
MPMX20_02477 -1.1 -1.5 Peptide transport system ATP-binding protein SapD compare
MPMX20_02010 -1.1 -3.6 Ion-translocating oxidoreductase complex subunit B compare
MPMX20_03636 -1.1 -2.2 Adenylyl-sulfate kinase compare
MPMX20_02321 -1.1 -4.4 Nodulation protein D 2 compare
MPMX20_02227 -1.1 -5.4 hypothetical protein compare
MPMX20_02871 -1.1 -3.8 hypothetical protein compare
MPMX20_02203 -1.1 -1.2 hypothetical protein compare
MPMX20_04119 -1.1 -0.7 DNA polymerase III subunit chi compare
MPMX20_04242 -1.1 -1.3 hypothetical protein compare
MPMX20_03310 -1.1 -1.0 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_02007 -1.1 -2.0 Ion-translocating oxidoreductase complex subunit G compare
MPMX20_03407 -1.1 -1.3 Chaperone protein HscA compare
MPMX20_02141 -1.1 -4.5 Bifunctional protein PaaZ compare
MPMX20_02597 -1.1 -1.8 tRNA-Tyr compare
MPMX20_02646 -1.1 -0.9 hypothetical protein compare
MPMX20_01975 -1.1 -7.9 Cyclopropane-fatty-acyl-phospholipid synthase compare
MPMX20_02892 -1.1 -3.3 hypothetical protein compare
MPMX20_00740 -1.1 -2.8 Carbamoyl-phosphate synthase large chain compare
MPMX20_02011 -1.1 -3.9 Ion-translocating oxidoreductase complex subunit A compare
MPMX20_03644 -1.1 -3.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
MPMX20_02770 -1.0 -2.4 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_01846 -1.0 -1.5 hypothetical protein compare
MPMX20_03334 -1.0 -0.7 hypothetical protein compare
MPMX20_02889 -1.0 -6.1 hypothetical protein compare
MPMX20_00722 -1.0 -4.3 Na(+)/H(+) antiporter NhaA compare
MPMX20_02895 -1.0 -4.6 hypothetical protein compare
MPMX20_03678 -1.0 -0.6 tRNA-Met compare
MPMX20_01552 -1.0 -1.5 hypothetical protein compare
MPMX20_02576 -1.0 -1.7 Protein TonB compare
MPMX20_03770 -1.0 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
MPMX20_02864 -1.0 -3.4 hypothetical protein compare
MPMX20_01903 -1.0 -1.7 Thioredoxin/glutathione peroxidase BtuE compare
MPMX20_04133 -1.0 -3.4 Stringent starvation protein A compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Rhizobium pusense TBS_045 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct across organisms