Experiment set5S283 for Lysobacter sp. OAE881

Compare to:

Ying_AminoAcid20 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
ABIE51_RS03165 -7.7 -10.6 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS13890 -7.3 -5.1 RNA polymerase sigma factor RpoE compare
ABIE51_RS17515 -7.2 -4.9 phosphomethylpyrimidine synthase ThiC compare
ABIE51_RS00035 -7.0 -16.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS04250 -7.0 -4.8 maleylacetoacetate isomerase compare
ABIE51_RS13145 -6.9 -11.6 acetyl-CoA C-acyltransferase compare
ABIE51_RS11490 -6.7 -10.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS17035 -6.6 -4.6 class I fructose-bisphosphate aldolase compare
ABIE51_RS16420 -6.6 -4.5 TMEM165/GDT1 family protein compare
ABIE51_RS10470 -6.6 -7.8 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS16555 -6.5 -7.7 SLC13 family permease compare
ABIE51_RS11460 -6.4 -11.5 alanine dehydrogenase compare
ABIE51_RS06340 -6.3 -4.4 hypothetical protein compare
ABIE51_RS04085 -6.0 -7.1 homogentisate 1,2-dioxygenase compare
ABIE51_RS03265 -6.0 -4.1 trypsin-like peptidase domain-containing protein compare
ABIE51_RS03945 -5.8 -12.5 ATP-binding protein compare
ABIE51_RS09125 -5.7 -19.5 amino acid permease compare
ABIE51_RS19215 -5.5 -19.5 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABIE51_RS17060 -5.5 -3.8 phosphoglycerate kinase compare
ABIE51_RS17095 -5.5 -3.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS05300 -5.3 -3.7 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS08715 -5.3 -10.8 heme ABC transporter permease CcmC compare
ABIE51_RS02220 -5.3 -6.7 DNA topoisomerase I compare
ABIE51_RS13530 -5.3 -9.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE51_RS08785 -5.3 -7.2 ScpA family protein compare
ABIE51_RS09450 -5.2 -3.6 gephyrin-like molybdotransferase Glp compare
ABIE51_RS04075 -5.2 -13.0 4-hydroxyphenylpyruvate dioxygenase compare
ABIE51_RS19180 -5.2 -5.4 SURF1 family protein compare
ABIE51_RS13260 -5.1 -3.5 amino acid permease compare
ABIE51_RS08880 -5.1 -7.7 chromosome segregation protein SMC compare
ABIE51_RS19265 -5.0 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS08700 -4.9 -13.8 heme lyase CcmF/NrfE family subunit compare
ABIE51_RS04310 -4.9 -5.2 glycosyltransferase compare
ABIE51_RS06250 -4.9 -11.4 imidazolonepropionase compare
ABIE51_RS08695 -4.8 -5.7 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS14090 -4.8 -4.6 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS08705 -4.7 -9.5 cytochrome c maturation protein CcmE compare
ABIE51_RS08720 -4.7 -6.4 heme exporter protein CcmB compare
ABIE51_RS11615 -4.6 -3.2 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS15015 -4.6 -4.4 preprotein translocase subunit YajC compare
ABIE51_RS19165 -4.6 -4.5 heme o synthase compare
ABIE51_RS00250 -4.6 -3.2 olefin beta-lactone synthetase compare
ABIE51_RS14055 -4.6 -3.1 GTP 3',8-cyclase MoaA compare
ABIE51_RS15435 -4.6 -13.4 cytochrome bc complex cytochrome b subunit compare
ABIE51_RS15430 -4.6 -11.7 cytochrome c1 compare
ABIE51_RS06020 -4.6 -20.5 2-methylcitrate synthase compare
ABIE51_RS17270 -4.6 -3.1 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS14040 -4.6 -3.1 molybdenum cofactor biosynthesis protein MoaE compare
ABIE51_RS09445 -4.5 -3.1 NTP transferase domain-containing protein compare
ABIE51_RS03935 -4.5 -3.1 hypothetical protein compare
ABIE51_RS14045 -4.5 -3.1 MoaD/ThiS family protein compare
ABIE51_RS12565 -4.5 -21.6 acyl-CoA dehydrogenase family protein compare
ABIE51_RS13115 -4.4 -12.0 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS09275 -4.4 -13.0 cytochrome c compare
ABIE51_RS09280 -4.3 -14.7 cytochrome c compare
ABIE51_RS19030 -4.3 -3.0 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS17705 -4.3 -11.1 protein-disulfide reductase DsbD compare
ABIE51_RS19210 -4.3 -18.2 cytochrome c oxidase subunit II compare
ABIE51_RS01280 -4.3 -4.1 lipid-binding SYLF domain-containing protein compare
ABIE51_RS17440 -4.3 -27.0 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS08725 -4.2 -3.3 heme ABC exporter ATP-binding protein CcmA compare
ABIE51_RS19015 -4.2 -13.5 cytochrome c4 compare
ABIE51_RS19195 -4.2 -20.5 cytochrome c oxidase assembly protein compare
ABIE51_RS04385 -4.2 -5.2 CoA transferase subunit B compare
ABIE51_RS09045 -4.2 -2.9 GntR family transcriptional regulator compare
ABIE51_RS11495 -4.2 -5.4 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS15440 -4.2 -6.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE51_RS04505 -4.1 -2.9 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS04380 -4.1 -12.5 CoA transferase subunit A compare
ABIE51_RS02450 -4.1 -4.8 MarR family transcriptional regulator compare
ABIE51_RS02990 -4.1 -4.0 molybdopterin oxidoreductase family protein compare
ABIE51_RS06555 -4.1 -4.8 protease modulator HflC compare
ABIE51_RS08690 -4.1 -3.1 cytochrome c-type biogenesis protein compare
ABIE51_RS16510 -4.1 -10.9 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS19170 -4.0 -14.3 COX15/CtaA family protein compare
ABIE51_RS16065 -4.0 -9.0 pyrroline-5-carboxylate reductase compare
ABIE51_RS06550 -4.0 -6.7 FtsH protease activity modulator HflK compare
ABIE51_RS00325 -4.0 -7.1 fatty acid desaturase compare
ABIE51_RS17760 -4.0 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS08780 -4.0 -8.0 SMC-Scp complex subunit ScpB compare
ABIE51_RS17405 -4.0 -10.7 rubredoxin compare
ABIE51_RS01265 -4.0 -12.0 twin-arginine translocase subunit TatC compare
ABIE51_RS15620 -4.0 -4.7 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS03030 -3.9 -6.7 DUF484 family protein compare
ABIE51_RS06000 -3.9 -2.7 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS19190 -3.9 -18.3 cytochrome c oxidase subunit 3 compare
ABIE51_RS15890 -3.9 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS14070 -3.8 -5.2 glycosyltransferase family 9 protein compare
ABIE51_RS16260 -3.8 -2.6 hypothetical protein compare
ABIE51_RS15400 -3.8 -4.6 Trm112 family protein compare
ABIE51_RS02980 -3.8 -2.6 4Fe-4S dicluster domain-containing protein compare
ABIE51_RS13480 -3.8 -2.6 phytoene/squalene synthase family protein compare
ABIE51_RS01110 -3.8 -7.6 c-type cytochrome compare
ABIE51_RS16735 -3.8 -4.4 flagellar export chaperone FliS compare
ABIE51_RS19025 -3.8 -3.7 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS04645 -3.8 -1.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABIE51_RS19205 -3.8 -17.1 cytochrome c oxidase subunit I compare
ABIE51_RS09340 -3.7 -2.6 (d)CMP kinase compare
ABIE51_RS14050 -3.7 -2.6 cyclic pyranopterin monophosphate synthase MoaC compare
ABIE51_RS06730 -3.7 -3.9 LPS assembly lipoprotein LptE compare
ABIE51_RS14530 -3.7 -11.4 hypothetical protein compare
ABIE51_RS17200 -3.7 -7.5 citrate synthase compare
ABIE51_RS17710 -3.7 -16.7 TlpA disulfide reductase family protein compare
ABIE51_RS00065 -3.7 -2.5 orotate phosphoribosyltransferase compare
ABIE51_RS04710 -3.7 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE51_RS13205 -3.7 -2.5 hydroxymethylglutaryl-CoA lyase compare
ABIE51_RS00515 -3.6 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS04850 -3.6 -19.3 sigma-54 dependent transcriptional regulator compare
ABIE51_RS01095 -3.6 -9.1 cell division protein ZapE compare
ABIE51_RS11110 -3.5 -8.6 molybdate ABC transporter substrate-binding protein compare
ABIE51_RS04475 -3.5 -16.7 leucyl aminopeptidase compare
ABIE51_RS10925 -3.5 -5.2 FadR/GntR family transcriptional regulator compare
ABIE51_RS16415 -3.5 -18.4 aldo/keto reductase compare
ABIE51_RS10930 -3.5 -3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABIE51_RS00700 -3.4 -3.2 ABC transporter ATP-binding protein compare
ABIE51_RS05540 -3.4 -2.0 hypothetical protein compare
ABIE51_RS02975 -3.4 -2.3 DmsC/YnfH family molybdoenzyme membrane anchor subunit compare
ABIE51_RS17770 -3.4 -2.3 phosphoribosylamine--glycine ligase compare
ABIE51_RS06180 -3.4 -2.3 amidophosphoribosyltransferase compare
ABIE51_RS03940 -3.4 -2.3 response regulator transcription factor compare
ABIE51_RS04490 -3.3 -11.4 RDD family protein compare
ABIE51_RS15375 -3.3 -9.3 SDR family NAD(P)-dependent oxidoreductase compare
ABIE51_RS14345 -3.3 -6.6 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS04125 -3.3 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS17630 -3.3 -2.3 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS03160 -3.3 -14.1 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS11120 -3.2 -4.8 ATP-binding cassette domain-containing protein compare
ABIE51_RS18545 -3.2 -2.0 DUF6249 domain-containing protein compare
ABIE51_RS12635 -3.2 -4.5 hypothetical protein compare
ABIE51_RS09105 -3.1 -2.2 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS06255 -3.1 -16.2 formimidoylglutamate deiminase compare
ABIE51_RS17260 -3.1 -12.1 RidA family protein compare
ABIE51_RS06815 -3.1 -12.1 (2E,6E)-farnesyl diphosphate synthase compare
ABIE51_RS14155 -3.1 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS14060 -3.1 -5.0 MBL fold metallo-hydrolase compare
ABIE51_RS05415 -3.0 -5.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE51_RS02300 -3.0 -5.9 lauroyl acyltransferase compare
ABIE51_RS06490 -3.0 -6.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE51_RS16360 -3.0 -3.4 glycine cleavage system protein GcvH compare
ABIE51_RS15880 -2.9 -12.9 AI-2E family transporter compare
ABIE51_RS11790 -2.9 -14.6 4a-hydroxytetrahydrobiopterin dehydratase compare
ABIE51_RS08960 -2.9 -7.8 YhdH/YhfP family quinone oxidoreductase compare
ABIE51_RS08210 -2.9 -10.0 SCO family protein compare
ABIE51_RS15970 -2.8 -3.3 HPr(Ser) kinase/phosphatase compare
ABIE51_RS17660 -2.8 -15.2 malonic semialdehyde reductase compare
ABIE51_RS03155 -2.8 -13.8 lytic murein transglycosylase B compare
ABIE51_RS08810 -2.8 -21.8 glucoamylase family protein compare
ABIE51_RS06240 -2.8 -12.0 30S ribosomal protein THX compare
ABIE51_RS15990 -2.8 -4.0 PTS sugar transporter subunit IIA compare
ABIE51_RS06785 -2.8 -16.1 ribonuclease G compare
ABIE51_RS09095 -2.8 -8.6 metalloregulator ArsR/SmtB family transcription factor compare
ABIE51_RS14085 -2.8 -1.9 DUF6165 family protein compare
ABIE51_RS06015 -2.7 -1.8 methylisocitrate lyase compare
ABIE51_RS03125 -2.7 -17.0 carbohydrate kinase family protein compare
ABIE51_RS11115 -2.7 -3.0 molybdate ABC transporter permease subunit compare
ABIE51_RS09100 -2.7 -13.8 acyl-CoA dehydrogenase family protein compare
ABIE51_RS13105 -2.6 -22.8 methylmalonyl-CoA mutase family protein compare
ABIE51_RS04705 -2.6 -3.8 division/cell wall cluster transcriptional repressor MraZ compare
ABIE51_RS04245 -2.6 -1.8 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS17320 -2.6 -20.4 aminopeptidase P N-terminal domain-containing protein compare
ABIE51_RS19105 -2.6 -12.1 pteridine reductase compare
ABIE51_RS16365 -2.6 -3.8 glycine cleavage system aminomethyltransferase GcvT compare
ABIE51_RS00235 -2.6 -13.3 2-alkyl-3-oxoalkanoate reductase compare
ABIE51_RS00925 -2.6 -21.8 phenylalanine 4-monooxygenase compare
ABIE51_RS16015 -2.6 -1.7 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS00695 -2.6 -6.4 ABC transporter permease compare
ABIE51_RS02280 -2.6 -6.2 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS15615 -2.5 -10.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS11515 -2.5 -7.8 high frequency lysogenization protein HflD compare
ABIE51_RS19175 -2.5 -5.9 hypothetical protein compare
ABIE51_RS15390 -2.4 -1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS13265 -2.4 -12.6 amino acid permease compare
ABIE51_RS16485 -2.4 -2.2 adenosylhomocysteinase compare
ABIE51_RS17740 -2.4 -11.2 hypothetical protein compare
ABIE51_RS00265 -2.4 -14.0 3-oxoacyl-ACP synthase III compare
ABIE51_RS13815 -2.4 -9.6 beta-N-acetylhexosaminidase compare
ABIE51_RS04535 -2.3 -6.1 type II secretion system major pseudopilin GspG compare
ABIE51_RS08815 -2.3 -12.8 sugar ABC transporter substrate-binding protein compare
ABIE51_RS14150 -2.3 -8.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS05180 -2.3 -5.8 glycosyltransferase compare
ABIE51_RS08870 -2.2 -7.3 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABIE51_RS04620 -2.2 -13.5 serine hydroxymethyltransferase compare
ABIE51_RS11675 -2.2 -8.0 type II toxin-antitoxin system RatA family toxin compare
ABIE51_RS09425 -2.2 -1.5 helix-turn-helix domain-containing protein compare
ABIE51_RS08825 -2.2 -9.6 carbohydrate ABC transporter permease compare
ABIE51_RS09430 -2.2 -9.3 tetratricopeptide repeat protein compare
ABIE51_RS08820 -2.2 -14.7 sugar ABC transporter permease compare
ABIE51_RS14120 -2.2 -8.0 peptidyl-prolyl cis-trans isomerase compare
ABIE51_RS03135 -2.1 -6.1 rod shape-determining protein MreC compare
ABIE51_RS13485 -2.1 -3.5 phosphoglycolate phosphatase compare
ABIE51_RS04555 -2.1 -13.0 type II secretion system protein GspK compare
ABIE51_RS03185 -2.1 -6.5 carboxy terminal-processing peptidase compare
ABIE51_RS13875 -2.1 -16.4 translation elongation factor 4 compare
ABIE51_RS16320 -2.0 -9.5 TetR/AcrR family transcriptional regulator compare
ABIE51_RS13455 -2.0 -4.4 membrane protein insertion efficiency factor YidD compare
ABIE51_RS06535 -2.0 -9.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABIE51_RS17400 -2.0 -15.6 DUF192 domain-containing protein compare
ABIE51_RS04530 -2.0 -7.4 type II secretion system F family protein compare
ABIE51_RS04550 -2.0 -4.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS04520 -2.0 -9.9 type II secretion system ATPase GspE compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source Ying_AminoAcid20 in Lysobacter sp. OAE881

For carbon source Ying_AminoAcid20 across organisms