Experiment set5S28 for Phocaeicola vulgatus CL09T03C04
diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2
Group: mouseMedia: + diet=StandardDiet; sample=FecalPellet; inoculation=MixComm
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24
Specific Phenotypes
For 2 genes in this experiment
For mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-Galacturonate and D-Glucuronate Utilization | 1 |
| D-Tagatose and Galactitol Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Pentose and glucuronate interconversions
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 4-deoxy-L-threo-hex-4-enopyranuronate degradation | 5 | 4 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 14 | 1 |