Experiment set5S278 for Lysobacter sp. OAE881

Compare to:

Ying_sugar7 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
ABIE51_RS15825 -8.6 -8.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABIE51_RS15835 -8.2 -5.7 phosphoadenylyl-sulfate reductase compare
ABIE51_RS05275 -8.1 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE51_RS16190 -7.9 -5.5 homoserine O-succinyltransferase compare
ABIE51_RS15855 -7.9 -5.4 siroheme synthase CysG compare
ABIE51_RS13405 -7.8 -5.4 argininosuccinate synthase compare
ABIE51_RS15820 -7.8 -9.2 sulfate adenylyltransferase subunit CysD compare
ABIE51_RS16490 -7.7 -10.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE51_RS13385 -7.7 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE51_RS17530 -7.7 -7.5 threonine synthase compare
ABIE51_RS16065 -7.7 -5.3 pyrroline-5-carboxylate reductase compare
ABIE51_RS15850 -7.6 -5.3 LysR family transcriptional regulator compare
ABIE51_RS13410 -7.5 -5.2 N-acetylornithine carbamoyltransferase compare
ABIE51_RS17565 -7.5 -7.3 threonine dehydratase compare
ABIE51_RS17525 -7.4 -8.8 homoserine kinase compare
ABIE51_RS16185 -7.4 -5.1 O-succinylhomoserine (thiol)-lyase compare
ABIE51_RS17560 -7.4 -7.2 aminotransferase class IV compare
ABIE51_RS13295 -7.4 -5.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABIE51_RS01840 -7.3 -5.1 sulfate/molybdate ABC transporter ATP-binding protein compare
ABIE51_RS17585 -7.3 -7.1 3-isopropylmalate dehydrogenase compare
ABIE51_RS04070 -7.3 -5.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE51_RS15955 -7.3 -14.7 RNA polymerase factor sigma-54 compare
ABIE51_RS17260 -7.2 -7.0 RidA family protein compare
ABIE51_RS13890 -7.2 -13.0 RNA polymerase sigma factor RpoE compare
ABIE51_RS08040 -7.2 -5.0 glucose-6-phosphate isomerase compare
ABIE51_RS13380 -7.2 -4.9 argininosuccinate lyase compare
ABIE51_RS17545 -7.1 -6.9 ketol-acid reductoisomerase compare
ABIE51_RS16420 -6.9 -4.7 TMEM165/GDT1 family protein compare
ABIE51_RS01845 -6.8 -4.7 sulfate ABC transporter permease subunit CysW compare
ABIE51_RS05170 -6.8 -21.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE51_RS15815 -6.8 -6.6 sulfate adenylyltransferase subunit CysN compare
ABIE51_RS02220 -6.8 -4.7 DNA topoisomerase I compare
ABIE51_RS01320 -6.7 -6.6 glutamate synthase large subunit compare
ABIE51_RS01855 -6.7 -4.6 sulfate ABC transporter substrate-binding protein compare
ABIE51_RS12150 -6.6 -6.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABIE51_RS17540 -6.6 -4.5 dihydroxy-acid dehydratase compare
ABIE51_RS13325 -6.6 -6.4 histidinol dehydrogenase compare
ABIE51_RS12145 -6.5 -4.5 prephenate dehydratase compare
ABIE51_RS13365 -6.5 -4.5 glutamate-5-semialdehyde dehydrogenase compare
ABIE51_RS18965 -6.5 -9.9 phosphoenolpyruvate carboxylase compare
ABIE51_RS03165 -6.4 -30.3 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS08265 -6.4 -4.4 tryptophan synthase subunit alpha compare
ABIE51_RS13240 -6.3 -6.2 FAD-binding oxidoreductase compare
ABIE51_RS13320 -6.3 -6.1 histidinol-phosphate transaminase compare
ABIE51_RS04180 -6.3 -4.3 anthranilate phosphoribosyltransferase compare
ABIE51_RS01630 -6.2 -6.0 SIS domain-containing protein compare
ABIE51_RS03265 -6.2 -4.3 trypsin-like peptidase domain-containing protein compare
ABIE51_RS01100 -6.2 -8.4 alpha/beta family hydrolase compare
ABIE51_RS15830 -6.2 -4.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABIE51_RS17520 -6.1 -4.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABIE51_RS04150 -6.1 -11.6 anthranilate synthase component I compare
ABIE51_RS01315 -6.1 -5.9 FAD-dependent oxidoreductase compare
ABIE51_RS13300 -6.0 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS13330 -6.0 -2.6 ATP phosphoribosyltransferase compare
ABIE51_RS08250 -6.0 -4.1 phosphoribosylanthranilate isomerase compare
ABIE51_RS01850 -6.0 -5.8 sulfate ABC transporter permease subunit CysT compare
ABIE51_RS03945 -6.0 -13.3 ATP-binding protein compare
ABIE51_RS17355 -5.9 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
ABIE51_RS06340 -5.9 -8.0 hypothetical protein compare
ABIE51_RS17550 -5.9 -4.0 acetolactate synthase 2 catalytic subunit compare
ABIE51_RS08740 -5.8 -16.3 amidohydrolase compare
ABIE51_RS17060 -5.8 -4.0 phosphoglycerate kinase compare
ABIE51_RS17095 -5.6 -6.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS17575 -5.6 -3.5 3-isopropylmalate dehydratase large subunit compare
ABIE51_RS13305 -5.6 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS05300 -5.5 -3.8 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS13395 -5.5 -5.1 acetylglutamate kinase compare
ABIE51_RS04620 -5.2 -5.1 serine hydroxymethyltransferase compare
ABIE51_RS19265 -5.2 -5.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS17535 -5.1 -7.8 hypothetical protein compare
ABIE51_RS00035 -5.1 -28.0 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS14090 -5.1 -3.5 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS09090 -4.9 -3.4 homocysteine S-methyltransferase family protein compare
ABIE51_RS11615 -4.9 -3.4 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS17580 -4.9 -2.9 3-isopropylmalate dehydratase small subunit compare
ABIE51_RS01610 -4.8 -3.3 phosphogluconate dehydratase compare
ABIE51_RS09085 -4.8 -4.7 methionine synthase compare
ABIE51_RS17270 -4.8 -3.3 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS17670 -4.8 -12.2 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABIE51_RS04310 -4.7 -6.4 glycosyltransferase compare
ABIE51_RS01280 -4.7 -3.3 lipid-binding SYLF domain-containing protein compare
ABIE51_RS18475 -4.7 -5.2 HAD family phosphatase compare
ABIE51_RS13245 -4.7 -2.9 phosphoglycerate dehydrogenase compare
ABIE51_RS02300 -4.6 -3.2 lauroyl acyltransferase compare
ABIE51_RS05975 -4.6 -3.2 class II 3-deoxy-7-phosphoheptulonate synthase compare
ABIE51_RS08260 -4.6 -3.1 tryptophan synthase subunit beta compare
ABIE51_RS18995 -4.5 -9.0 alpha-glucosidase family protein compare
ABIE51_RS15990 -4.5 -4.3 PTS sugar transporter subunit IIA compare
ABIE51_RS15620 -4.4 -5.2 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS11510 -4.4 -22.0 tRNA 2-thiouridine(34) synthase MnmA compare
ABIE51_RS04190 -4.4 -3.0 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS08880 -4.4 -13.1 chromosome segregation protein SMC compare
ABIE51_RS19105 -4.4 -12.7 pteridine reductase compare
ABIE51_RS03935 -4.3 -5.8 hypothetical protein compare
ABIE51_RS04505 -4.3 -3.0 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS17760 -4.2 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS17715 -4.2 -2.9 type II 3-dehydroquinate dehydratase compare
ABIE51_RS14135 -4.2 -1.8 tRNA-Val compare
ABIE51_RS04085 -4.2 -12.8 homogentisate 1,2-dioxygenase compare
ABIE51_RS09045 -4.2 -4.9 GntR family transcriptional regulator compare
ABIE51_RS14345 -4.1 -2.9 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS15890 -4.1 -2.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS08785 -4.1 -15.8 ScpA family protein compare
ABIE51_RS16260 -4.1 -2.8 hypothetical protein compare
ABIE51_RS06000 -4.1 -2.8 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS16510 -4.1 -12.0 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS15895 -4.1 -12.2 phosphoribosylglycinamide formyltransferase compare
ABIE51_RS17570 -4.1 -2.5 2-isopropylmalate synthase compare
ABIE51_RS14150 -4.0 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS09340 -4.0 -2.8 (d)CMP kinase compare
ABIE51_RS14070 -4.0 -5.3 glycosyltransferase family 9 protein compare
ABIE51_RS04705 -4.0 -2.7 division/cell wall cluster transcriptional repressor MraZ compare
ABIE51_RS14060 -3.9 -2.7 MBL fold metallo-hydrolase compare
ABIE51_RS00925 -3.9 -15.9 phenylalanine 4-monooxygenase compare
ABIE51_RS00065 -3.9 -2.6 orotate phosphoribosyltransferase compare
ABIE51_RS14530 -3.9 -13.1 hypothetical protein compare
ABIE51_RS03035 -3.9 -5.2 tyrosine recombinase XerC compare
ABIE51_RS13115 -3.8 -15.6 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS15240 -3.8 -3.3 integration host factor subunit alpha compare
ABIE51_RS01635 -3.8 -2.6 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE51_RS13370 -3.7 -1.8 glutamate 5-kinase compare
ABIE51_RS01360 -3.7 -2.5 nitrogen regulation protein NR(I) compare
ABIE51_RS16360 -3.7 -2.5 glycine cleavage system protein GcvH compare
ABIE51_RS08780 -3.6 -10.0 SMC-Scp complex subunit ScpB compare
ABIE51_RS05540 -3.6 -2.4 hypothetical protein compare
ABIE51_RS17770 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE51_RS13480 -3.6 -3.4 phytoene/squalene synthase family protein compare
ABIE51_RS13315 -3.6 -1.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABIE51_RS06180 -3.6 -2.4 amidophosphoribosyltransferase compare
ABIE51_RS03940 -3.5 -2.4 response regulator transcription factor compare
ABIE51_RS17630 -3.5 -2.4 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS11790 -3.5 -16.2 4a-hydroxytetrahydrobiopterin dehydratase compare
ABIE51_RS04125 -3.5 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS16365 -3.5 -3.3 glycine cleavage system aminomethyltransferase GcvT compare
ABIE51_RS00515 -3.5 -4.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS03160 -3.5 -15.3 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS01370 -3.5 -23.5 glycoside hydrolase family 3 N-terminal domain-containing protein compare
ABIE51_RS04495 -3.5 -5.6 site-specific tyrosine recombinase XerD compare
ABIE51_RS17230 -3.4 -10.6 ATP-dependent DNA helicase RecG compare
ABIE51_RS08540 -3.4 -24.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABIE51_RS14105 -3.4 -2.3 hydroxyacylglutathione hydrolase compare
ABIE51_RS06905 -3.4 -5.6 RIP metalloprotease RseP compare
ABIE51_RS19030 -3.4 -8.0 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS13885 -3.4 -5.1 sigma-E factor negative regulatory protein compare
ABIE51_RS15425 -3.4 -9.7 glutathione S-transferase N-terminal domain-containing protein compare
ABIE51_RS18545 -3.4 -2.2 DUF6249 domain-containing protein compare
ABIE51_RS03270 -3.4 -28.0 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
ABIE51_RS15615 -3.4 -12.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS17555 -3.3 -1.9 ACT domain-containing protein compare
ABIE51_RS11490 -3.3 -26.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS02450 -3.3 -5.8 MarR family transcriptional regulator compare
ABIE51_RS14155 -3.3 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS08535 -3.2 -11.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABIE51_RS03155 -3.2 -16.7 lytic murein transglycosylase B compare
ABIE51_RS13525 -3.2 -11.2 acetoacetyl-CoA reductase compare
ABIE51_RS07575 -3.1 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS05045 -3.1 -2.1 Holliday junction branch migration protein RuvA compare
ABIE51_RS16485 -3.1 -2.0 adenosylhomocysteinase compare
ABIE51_RS15310 -3.1 -20.9 excinuclease ABC subunit UvrB compare
ABIE51_RS11495 -3.0 -5.3 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS06980 -3.0 -1.8 [protein-PII] uridylyltransferase compare
ABIE51_RS02280 -3.0 -6.1 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS16095 -2.9 -1.6 shikimate kinase compare
ABIE51_RS04645 -2.9 -1.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABIE51_RS12540 -2.9 -4.2 folate-binding protein YgfZ compare
ABIE51_RS07610 -2.9 -23.6 excinuclease ABC subunit UvrA compare
ABIE51_RS00540 -2.8 -14.2 NADP-dependent isocitrate dehydrogenase compare
ABIE51_RS10930 -2.8 -3.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABIE51_RS17200 -2.8 -12.0 citrate synthase compare
ABIE51_RS11780 -2.8 -10.9 transmembrane repetitive protein compare
ABIE51_RS16015 -2.8 -1.9 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS17420 -2.8 -18.0 acetylornithine/succinyldiaminopimelate transaminase conserved
ABIE51_RS07005 -2.8 -1.9 asparagine synthase B compare
ABIE51_RS03185 -2.8 -6.0 carboxy terminal-processing peptidase compare
ABIE51_RS05295 -2.7 -1.9 response regulator transcription factor compare
ABIE51_RS09065 -2.7 -7.9 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS11625 -2.7 -5.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
ABIE51_RS06490 -2.7 -5.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE51_RS04245 -2.6 -2.5 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS15970 -2.6 -4.8 HPr(Ser) kinase/phosphatase compare
ABIE51_RS15390 -2.6 -1.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS14490 -2.6 -11.1 N-acetylmuramoyl-L-alanine amidase compare
ABIE51_RS16735 -2.6 -5.4 flagellar export chaperone FliS compare
ABIE51_RS13815 -2.6 -10.3 beta-N-acetylhexosaminidase compare
ABIE51_RS12140 -2.6 -3.7 histidinol-phosphate transaminase compare
ABIE51_RS11455 -2.6 -2.4 DNA translocase FtsK compare
ABIE51_RS14495 -2.6 -17.6 acyl-CoA thioesterase II compare
ABIE51_RS00250 -2.5 -6.6 olefin beta-lactone synthetase compare
ABIE51_RS01985 -2.5 -13.1 DNA helicase II compare
ABIE51_RS01025 -2.5 -10.0 exodeoxyribonuclease V subunit beta compare
ABIE51_RS09425 -2.5 -1.7 helix-turn-helix domain-containing protein compare
ABIE51_RS04825 -2.5 -10.0 pilin compare
ABIE51_RS01815 -2.5 -1.7 shikimate dehydrogenase compare
ABIE51_RS19165 -2.5 -9.4 heme o synthase compare
ABIE51_RS15405 -2.4 -9.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABIE51_RS12685 -2.4 -6.4 kynureninase compare
ABIE51_RS13540 -2.4 -9.7 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS18675 -2.4 -17.0 NAD(P)-dependent oxidoreductase compare
ABIE51_RS03125 -2.3 -16.3 carbohydrate kinase family protein compare
ABIE51_RS02175 -2.3 -16.3 signal peptide peptidase SppA compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Ying_sugar7 in Lysobacter sp. OAE881

For carbon source Ying_sugar7 across organisms