Experiment set5S276 for Lysobacter sp. OAE881

Compare to:

Ying_all64 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
ABIE51_RS13890 -6.4 -4.4 RNA polymerase sigma factor RpoE compare
ABIE51_RS16420 -5.7 -3.9 TMEM165/GDT1 family protein compare
ABIE51_RS03945 -5.4 -3.8 ATP-binding protein compare
ABIE51_RS03165 -5.4 -21.6 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS11490 -5.3 -15.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS00035 -5.3 -17.8 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS16555 -5.2 -7.9 SLC13 family permease compare
ABIE51_RS08040 -5.1 -7.8 glucose-6-phosphate isomerase compare
ABIE51_RS06340 -5.1 -4.9 hypothetical protein compare
ABIE51_RS03265 -5.1 -3.5 trypsin-like peptidase domain-containing protein compare
ABIE51_RS10470 -4.5 -9.6 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS01630 -4.3 -7.7 SIS domain-containing protein compare
ABIE51_RS15615 -4.3 -5.1 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS17515 -4.3 -12.3 phosphomethylpyrimidine synthase ThiC compare
ABIE51_RS13260 -4.2 -2.9 amino acid permease compare
ABIE51_RS05300 -4.2 -4.1 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS04250 -4.1 -7.7 maleylacetoacetate isomerase compare
ABIE51_RS01000 -4.0 -10.6 ABC transporter substrate-binding protein compare
ABIE51_RS09450 -4.0 -4.7 gephyrin-like molybdotransferase Glp compare
ABIE51_RS08785 -3.8 -9.2 ScpA family protein compare
ABIE51_RS15620 -3.8 -2.6 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS08880 -3.8 -7.2 chromosome segregation protein SMC compare
ABIE51_RS17095 -3.7 -8.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS03935 -3.7 -2.6 hypothetical protein compare
ABIE51_RS19165 -3.6 -4.8 heme o synthase compare
ABIE51_RS14040 -3.5 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
ABIE51_RS09445 -3.5 -5.3 NTP transferase domain-containing protein compare
ABIE51_RS16510 -3.4 -7.2 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS02300 -3.4 -3.3 lauroyl acyltransferase compare
ABIE51_RS00990 -3.4 -11.2 VacJ family lipoprotein compare
ABIE51_RS19030 -3.4 -3.3 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS14045 -3.3 -3.1 MoaD/ThiS family protein compare
ABIE51_RS09045 -3.3 -3.2 GntR family transcriptional regulator compare
ABIE51_RS13530 -3.2 -8.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE51_RS06000 -3.2 -2.2 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS02990 -3.1 -7.0 molybdopterin oxidoreductase family protein compare
ABIE51_RS08780 -3.1 -5.9 SMC-Scp complex subunit ScpB compare
ABIE51_RS16260 -3.1 -2.1 hypothetical protein compare
ABIE51_RS04310 -3.1 -4.7 glycosyltransferase compare
ABIE51_RS06430 -3.1 -1.9 hypothetical protein compare
ABIE51_RS06785 -3.1 -13.2 ribonuclease G compare
ABIE51_RS01280 -3.1 -3.0 lipid-binding SYLF domain-containing protein compare
ABIE51_RS13480 -3.1 -2.1 phytoene/squalene synthase family protein compare
ABIE51_RS19265 -3.1 -9.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS04085 -3.0 -9.3 homogentisate 1,2-dioxygenase compare
ABIE51_RS06905 -3.0 -2.1 RIP metalloprotease RseP compare
ABIE51_RS02980 -3.0 -2.9 4Fe-4S dicluster domain-containing protein compare
ABIE51_RS13485 -3.0 -2.8 phosphoglycolate phosphatase compare
ABIE51_RS14050 -3.0 -2.0 cyclic pyranopterin monophosphate synthase MoaC compare
ABIE51_RS13420 -2.9 -10.1 hypothetical protein compare
ABIE51_RS04475 -2.9 -11.3 leucyl aminopeptidase compare
ABIE51_RS14070 -2.9 -3.4 glycosyltransferase family 9 protein compare
ABIE51_RS16735 -2.9 -3.4 flagellar export chaperone FliS compare
ABIE51_RS08720 -2.9 -6.0 heme exporter protein CcmB compare
ABIE51_RS01635 -2.9 -2.0 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE51_RS01015 -2.8 -7.2 ABC transporter ATP-binding protein compare
ABIE51_RS03160 -2.7 -7.7 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS05540 -2.7 -1.8 hypothetical protein compare
ABIE51_RS17450 -2.7 -14.2 Mur ligase family protein compare
ABIE51_RS03940 -2.7 -1.8 response regulator transcription factor compare
ABIE51_RS19015 -2.7 -9.2 cytochrome c4 compare
ABIE51_RS00700 -2.6 -2.5 ABC transporter ATP-binding protein compare
ABIE51_RS00995 -2.6 -3.9 STAS domain-containing protein compare
ABIE51_RS17630 -2.6 -1.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS15890 -2.6 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS09105 -2.6 -1.8 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS01010 -2.5 -9.8 MlaE family lipid ABC transporter permease subunit compare
ABIE51_RS19210 -2.5 -12.1 cytochrome c oxidase subunit II compare
ABIE51_RS06815 -2.5 -7.7 (2E,6E)-farnesyl diphosphate synthase compare
ABIE51_RS11495 -2.5 -4.8 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS01005 -2.5 -19.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABIE51_RS01265 -2.5 -7.4 twin-arginine translocase subunit TatC compare
ABIE51_RS18545 -2.5 -1.6 DUF6249 domain-containing protein compare
ABIE51_RS08705 -2.4 -8.0 cytochrome c maturation protein CcmE compare
ABIE51_RS04505 -2.4 -4.6 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS08715 -2.4 -9.1 heme ABC transporter permease CcmC compare
ABIE51_RS03155 -2.4 -12.1 lytic murein transglycosylase B compare
ABIE51_RS04075 -2.4 -10.2 4-hydroxyphenylpyruvate dioxygenase compare
ABIE51_RS15430 -2.4 -8.8 cytochrome c1 compare
ABIE51_RS16065 -2.4 -4.9 pyrroline-5-carboxylate reductase compare
ABIE51_RS14055 -2.4 -2.7 GTP 3',8-cyclase MoaA compare
ABIE51_RS19180 -2.4 -4.4 SURF1 family protein compare
ABIE51_RS09370 -2.4 -11.6 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS15435 -2.4 -10.2 cytochrome bc complex cytochrome b subunit compare
ABIE51_RS04620 -2.3 -10.1 serine hydroxymethyltransferase compare
ABIE51_RS02975 -2.3 -4.1 DmsC/YnfH family molybdoenzyme membrane anchor subunit compare
ABIE51_RS17320 -2.3 -15.0 aminopeptidase P N-terminal domain-containing protein compare
ABIE51_RS17615 -2.3 -9.3 TolC family outer membrane protein compare
ABIE51_RS13265 -2.3 -13.1 amino acid permease compare
ABIE51_RS05180 -2.3 -3.1 glycosyltransferase compare
ABIE51_RS08695 -2.3 -5.8 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS17705 -2.3 -11.0 protein-disulfide reductase DsbD compare
ABIE51_RS06180 -2.3 -3.4 amidophosphoribosyltransferase compare
ABIE51_RS14155 -2.3 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS11110 -2.2 -4.5 molybdate ABC transporter substrate-binding protein compare
ABIE51_RS11510 -2.2 -12.9 tRNA 2-thiouridine(34) synthase MnmA compare
ABIE51_RS09280 -2.2 -9.7 cytochrome c compare
ABIE51_RS13305 -2.2 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS09275 -2.2 -8.8 cytochrome c compare
ABIE51_RS09065 -2.2 -6.4 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS01110 -2.2 -5.2 c-type cytochrome compare
ABIE51_RS19175 -2.1 -5.1 hypothetical protein compare
ABIE51_RS06015 -2.1 -1.4 methylisocitrate lyase compare
ABIE51_RS15375 -2.1 -6.0 SDR family NAD(P)-dependent oxidoreductase compare
ABIE51_RS02220 -2.1 -4.0 DNA topoisomerase I compare
ABIE51_RS14085 -2.1 -1.4 DUF6165 family protein compare
ABIE51_RS13115 -2.1 -8.9 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS12565 -2.1 -12.9 acyl-CoA dehydrogenase family protein compare
ABIE51_RS17060 -2.1 -5.6 phosphoglycerate kinase compare
ABIE51_RS02450 -2.1 -3.6 MarR family transcriptional regulator compare
ABIE51_RS00515 -2.1 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS19170 -2.0 -7.8 COX15/CtaA family protein compare
ABIE51_RS04245 -2.0 -1.4 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS14150 -2.0 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS05295 -2.0 -1.4 response regulator transcription factor compare
ABIE51_RS17770 -2.0 -2.3 phosphoribosylamine--glycine ligase compare
ABIE51_RS16415 -2.0 -10.8 aldo/keto reductase compare
ABIE51_RS19195 -2.0 -10.9 cytochrome c oxidase assembly protein compare
ABIE51_RS07170 -2.0 -3.2 hypothetical protein compare
ABIE51_RS11185 -1.9 -2.3 hypothetical protein compare
ABIE51_RS19205 -1.9 -13.0 cytochrome c oxidase subunit I compare
ABIE51_RS06535 -1.9 -6.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABIE51_RS14060 -1.9 -3.5 MBL fold metallo-hydrolase compare
ABIE51_RS08700 -1.9 -10.0 heme lyase CcmF/NrfE family subunit compare
ABIE51_RS17345 -1.9 -6.5 cell division protein ZapA compare
ABIE51_RS04390 -1.9 -5.6 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS12635 -1.9 -3.5 hypothetical protein compare
ABIE51_RS08690 -1.9 -2.4 cytochrome c-type biogenesis protein compare
ABIE51_RS17200 -1.9 -6.6 citrate synthase compare
ABIE51_RS15970 -1.9 -2.7 HPr(Ser) kinase/phosphatase compare
ABIE51_RS16320 -1.8 -7.0 TetR/AcrR family transcriptional regulator compare
ABIE51_RS03185 -1.8 -4.2 carboxy terminal-processing peptidase compare
ABIE51_RS19215 -1.8 -13.0 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABIE51_RS13145 -1.8 -7.7 acetyl-CoA C-acyltransferase compare
ABIE51_RS19190 -1.8 -10.2 cytochrome c oxidase subunit 3 compare
ABIE51_RS15440 -1.8 -4.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE51_RS04490 -1.8 -6.4 RDD family protein compare
ABIE51_RS09425 -1.8 -1.2 helix-turn-helix domain-containing protein compare
ABIE51_RS04920 -1.8 -1.9 trehalose-phosphatase compare
ABIE51_RS07175 -1.8 -5.0 HNH endonuclease signature motif containing protein compare
ABIE51_RS17440 -1.8 -13.3 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS15905 -1.7 -7.6 DUF3108 domain-containing protein compare
ABIE51_RS11515 -1.7 -3.9 high frequency lysogenization protein HflD compare
ABIE51_RS03135 -1.7 -4.7 rod shape-determining protein MreC compare
ABIE51_RS06550 -1.7 -5.9 FtsH protease activity modulator HflK compare
ABIE51_RS13885 -1.7 -2.5 sigma-E factor negative regulatory protein compare
ABIE51_RS11120 -1.7 -3.2 ATP-binding cassette domain-containing protein compare
ABIE51_RS09365 -1.7 -1.1 glycosyltransferase family 4 protein compare
ABIE51_RS05550 -1.7 -1.3 hypothetical protein compare
ABIE51_RS07100 -1.7 -2.6 hypothetical protein compare
ABIE51_RS17530 -1.6 -8.3 threonine synthase compare
ABIE51_RS07185 -1.6 -5.3 DUF968 domain-containing protein compare
ABIE51_RS04410 -1.6 -5.0 MlaD family protein compare
ABIE51_RS02265 -1.6 -2.7 glycosyltransferase family 2 protein compare
ABIE51_RS15990 -1.6 -2.1 PTS sugar transporter subunit IIA compare
ABIE51_RS14530 -1.6 -5.4 hypothetical protein compare
ABIE51_RS00635 -1.6 -1.1 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS06555 -1.6 -4.3 protease modulator HflC compare
ABIE51_RS06715 -1.6 -1.7 DUF998 domain-containing protein compare
ABIE51_RS00725 -1.6 -6.0 energy transducer TonB compare
ABIE51_RS07465 -1.5 -1.2 hypothetical protein compare
ABIE51_RS09375 -1.5 -6.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS02280 -1.5 -3.4 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS06495 -1.5 -4.5 YqaA family protein compare
ABIE51_RS09340 -1.5 -3.1 (d)CMP kinase compare
ABIE51_RS07090 -1.5 -6.3 recombination protein NinB compare
ABIE51_RS17400 -1.5 -10.7 DUF192 domain-containing protein compare
ABIE51_RS04405 -1.5 -5.0 ABC-type transport auxiliary lipoprotein family protein compare
ABIE51_RS14395 -1.5 -2.9 PAS domain S-box protein compare
ABIE51_RS04415 -1.5 -8.5 ABC transporter ATP-binding protein compare
ABIE51_RS09415 -1.5 -10.6 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABIE51_RS13495 -1.5 -4.6 TRZ/ATZ family hydrolase compare
ABIE51_RS06490 -1.5 -2.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE51_RS17040 -1.4 -4.2 pyruvate kinase compare
ABIE51_RS06255 -1.4 -7.1 formimidoylglutamate deiminase compare
ABIE51_RS17660 -1.4 -5.8 malonic semialdehyde reductase compare
ABIE51_RS06240 -1.4 -6.0 30S ribosomal protein THX compare
ABIE51_RS11460 -1.4 -8.1 alanine dehydrogenase compare
ABIE51_RS15015 -1.4 -2.3 preprotein translocase subunit YajC compare
ABIE51_RS01335 -1.4 -4.5 barstar family protein compare
ABIE51_RS04550 -1.4 -3.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS15035 -1.4 -7.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABIE51_RS01360 -1.4 -1.6 nitrogen regulation protein NR(I) compare
ABIE51_RS09095 -1.3 -5.0 metalloregulator ArsR/SmtB family transcription factor compare
ABIE51_RS06415 -1.3 -7.9 N-formylglutamate deformylase compare
ABIE51_RS00785 -1.3 -2.2 energy transducer TonB compare
ABIE51_RS04420 -1.3 -6.8 ABC transporter permease compare
ABIE51_RS14135 -1.3 -1.0 tRNA-Val compare
ABIE51_RS01205 -1.3 -8.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABIE51_RS07060 -1.3 -3.4 hypothetical protein compare
ABIE51_RS05375 -1.3 -4.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABIE51_RS04805 -1.3 -0.9 A24 family peptidase compare
ABIE51_RS04850 -1.3 -8.2 sigma-54 dependent transcriptional regulator compare
ABIE51_RS00325 -1.3 -4.4 fatty acid desaturase compare
ABIE51_RS16395 -1.3 -0.8 PDZ domain-containing protein compare
ABIE51_RS14300 -1.3 -5.7 GNAT family N-acetyltransferase compare
ABIE51_RS03625 -1.3 -4.5 sugar porter family MFS transporter compare
ABIE51_RS01095 -1.3 -4.5 cell division protein ZapE compare
ABIE51_RS16430 -1.3 -7.6 nucleoside transporter C-terminal domain-containing protein compare
ABIE51_RS17710 -1.3 -6.6 TlpA disulfide reductase family protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_all64 in Lysobacter sp. OAE881

For carbon source Ying_all64 across organisms