Experiment set5IT096 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3516 -4.0 -3.1 Probable transmembrane protein compare
Pf6N2E2_5705 -3.4 -3.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4803 -3.4 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4743 -3.3 -1.5 hypothetical protein compare
Pf6N2E2_3661 -3.2 -3.8 hypothetical protein compare
Pf6N2E2_3658 -3.0 -7.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3303 -2.9 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2219 -2.8 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3659 -2.7 -5.7 Protein fixF compare
Pf6N2E2_2506 -2.6 -13.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_623 -2.5 -2.0 FIG00954674: hypothetical protein compare
Pf6N2E2_2127 -2.5 -5.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5338 -2.4 -8.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3271 -2.4 -2.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2217 -2.3 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4153 -2.3 -1.6 Sensory box histidine kinase compare
Pf6N2E2_5069 -2.3 -6.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2176 -2.3 -2.6 Amidases related to nicotinamidase compare
Pf6N2E2_5155 -2.3 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3941 -2.2 -3.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5527 -2.2 -2.6 Cold shock protein CspC compare
Pf6N2E2_4611 -2.2 -3.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3199 -2.2 -6.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4369 -2.1 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2264 -2.1 -4.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5727 -2.1 -5.7 FIG00955360: hypothetical protein compare
Pf6N2E2_3839 -2.0 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_178 -2.0 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5006 -2.0 -6.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_6057 -2.0 -3.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2218 -2.0 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5339 -2.0 -6.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5242 -1.9 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5950 -1.9 -3.6 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3461 -1.9 -2.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3782 -1.9 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4159 -1.9 -3.3 Cytochrome c4 compare
Pf6N2E2_3534 -1.9 -2.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2320 -1.9 -2.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2507 -1.8 -5.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3546 -1.8 -2.9 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_2010 -1.7 -1.7 hypothetical protein compare
Pf6N2E2_5316 -1.7 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_6064 -1.6 -5.2 2-methylaconitate isomerase compare
Pf6N2E2_3834 -1.6 -4.5 Lipoprotein NlpD compare
Pf6N2E2_4372 -1.6 -4.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3665 -1.6 -1.0 serine/threonine protein kinase compare
Pf6N2E2_4204 -1.6 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3611 -1.6 -1.4 HflC protein compare
Pf6N2E2_5406 -1.5 -2.5 FIG00958224: hypothetical protein compare
Pf6N2E2_1040 -1.5 -1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5337 -1.5 -3.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2261 -1.5 -5.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_2309 -1.5 -1.8 hypothetical protein compare
Pf6N2E2_2574 -1.5 -1.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_3253 -1.5 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5226 -1.5 -1.5 FIG00955589: hypothetical protein compare
Pf6N2E2_1694 -1.5 -1.4 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2274 -1.5 -4.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2509 -1.5 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4416 -1.5 -2.4 Tyrosine recombinase XerC compare
Pf6N2E2_2674 -1.4 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_3568 -1.4 -2.3 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4638 -1.4 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4537 -1.4 -2.5 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_5869 -1.4 -2.3 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_2312 -1.4 -1.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_3841 -1.4 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3252 -1.4 -5.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_70 -1.4 -3.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5342 -1.3 -2.1 21 kDa hemolysin precursor compare
Pf6N2E2_2825 -1.3 -3.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3792 -1.3 -3.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2479 -1.3 -2.3 Transcription elongation factor GreB compare
Pf6N2E2_3610 -1.3 -2.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2088 -1.3 -1.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3607 -1.3 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5965 -1.3 -3.0 transcriptional regulator compare
Pf6N2E2_3477 -1.3 -1.1 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2318 -1.3 -4.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1966 -1.3 -2.2 SAM-dependent methyltransferases compare
Pf6N2E2_3847 -1.3 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2181 -1.3 -1.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1199 -1.3 -3.1 hypothetical protein compare
Pf6N2E2_2487 -1.3 -1.1 FIG00956090: hypothetical protein compare
Pf6N2E2_445 -1.2 -3.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_6059 -1.2 -2.8 FIG008443: hypothetical protein compare
Pf6N2E2_5523 -1.2 -3.8 Small-conductance mechanosensitive channel compare
Pf6N2E2_2864 -1.2 -0.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3039 -1.2 -4.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3179 -1.2 -2.0 FIG021952: putative membrane protein compare
Pf6N2E2_4365 -1.2 -4.0 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_1335 -1.2 -2.5 Phospholipid-binding protein compare
Pf6N2E2_2310 -1.2 -5.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3786 -1.2 -2.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_3460 -1.2 -1.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3074 -1.2 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_4187 -1.2 -2.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3108 -1.1 -1.7 FIG00953405: hypothetical protein compare
Pf6N2E2_1089 -1.1 -1.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3270 -1.1 -2.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_2200 -1.1 -1.3 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3791 -1.1 -4.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5068 -1.1 -6.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3842 -1.1 -3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1705 -1.1 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2675 -1.1 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_170 -1.1 -1.1 lipoprotein, putative compare
Pf6N2E2_2938 -1.1 -3.5 Outer membrane lipoprotein compare
Pf6N2E2_5668 -1.1 -2.6 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_6063 -1.1 -4.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2313 -1.1 -1.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3264 -1.1 -1.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_6038 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_2503 -1.1 -1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_649 -1.1 -2.2 General secretion pathway protein L compare
Pf6N2E2_3260 -1.1 -3.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_89 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_1470 -1.1 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_2156 -1.1 -2.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_3537 -1.1 -3.3 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_2586 -1.1 -1.7 Hpt domain protein compare
Pf6N2E2_1056 -1.1 -0.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5178 -1.1 -1.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4556 -1.1 -2.0 FIG00953078: hypothetical protein compare
Pf6N2E2_2266 -1.1 -2.1 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_4084 -1.0 -4.4 Transcriptional regulator compare
Pf6N2E2_2201 -1.0 -2.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_2474 -1.0 -4.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3261 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_2126 -1.0 -4.0 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_295 -1.0 -2.3 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_500 -1.0 -1.9 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_5014 -1.0 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2367 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_2755 -1.0 -1.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5430 -1.0 -4.5 Transglycosylase, Slt family compare
Pf6N2E2_2022 -1.0 -4.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4678 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_5319 -1.0 -4.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3104 -1.0 -3.7 FIG00958830: hypothetical protein compare
Pf6N2E2_2074 -1.0 -0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3634 -1.0 -1.3 Transporter compare
Pf6N2E2_4541 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_4715 -1.0 -3.0 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_2472 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_6140 -1.0 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1989 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_2869 -1.0 -1.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3373 -1.0 -1.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2870 -1.0 -2.3 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2371 -1.0 -2.1 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2508 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_1188 -1.0 -2.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_3940 -1.0 -4.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4584 -1.0 -1.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5001 -1.0 -1.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4826 -0.9 -3.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3726 -0.9 -3.3 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_1173 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_927 -0.9 -2.6 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3251 -0.9 -4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1624 -0.9 -2.5 MbtH-like protein compare
Pf6N2E2_2317 -0.9 -2.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2986 -0.9 -2.5 Transcriptional regulator, LuxR family compare
Pf6N2E2_122 -0.9 -1.6 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_402 -0.9 -2.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4352 -0.9 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1076 -0.9 -3.9 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf6N2E2_2513 -0.9 -2.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_78 -0.9 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4128 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_3942 -0.9 -4.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2871 -0.9 -1.1 FIG00954271: hypothetical protein compare
Pf6N2E2_2514 -0.9 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_1699 -0.9 -1.7 FIG00955832: hypothetical protein compare
Pf6N2E2_660 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_3258 -0.9 -2.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4534 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_5320 -0.9 -3.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_417 -0.9 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1797 -0.9 -1.8 Transcriptional regulator compare
Pf6N2E2_2822 -0.9 -4.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3017 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_2064 -0.8 -2.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_625 -0.8 -2.9 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3908 -0.8 -3.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1972 -0.8 -1.3 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_5150 -0.8 -2.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4013 -0.8 -4.9 5-aminovalerate transaminase (EC 2.6.1.48) (from data) compare
Pf6N2E2_5435 -0.8 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4014 -0.8 -3.8 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_1074 -0.8 -0.9 FIG00953356: hypothetical protein compare
Pf6N2E2_5678 -0.8 -3.4 hypothetical protein compare
Pf6N2E2_384 -0.8 -1.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5780 -0.8 -4.0 Periplasmic protease compare
Pf6N2E2_4451 -0.8 -2.9 FIG139438: lipoprotein B compare
Pf6N2E2_264 -0.8 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2469 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_3729 -0.8 -2.2 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments