Experiment set5IT096 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4057 +1.7 1.9 lipoprotein, putative compare
Pf6N2E2_733 +1.2 2.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_1758 +1.2 2.3 Transcriptional regulator, MarR family compare
Pf6N2E2_1987 +1.2 3.0 hypothetical protein compare
Pf6N2E2_2967 +1.2 2.9 Cold shock protein CspA compare
Pf6N2E2_2324 +1.1 2.2 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_961 +1.1 3.2 FIG00954712: hypothetical protein compare
Pf6N2E2_6093 +1.0 3.3 hypothetical protein compare
Pf6N2E2_1014 +1.0 1.5 Nitrate/nitrite transporter compare
Pf6N2E2_2518 +1.0 3.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_5843 +1.0 2.7 hypothetical protein compare
Pf6N2E2_672 +1.0 1.6 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_309 +1.0 1.8 FIG00957702: hypothetical protein compare
Pf6N2E2_344 +1.0 2.5 hypothetical protein compare
Pf6N2E2_2519 +0.9 1.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3206 +0.9 1.5 hypothetical protein compare
Pf6N2E2_2795 +0.9 1.8 putative exported protein compare
Pf6N2E2_5510 +0.9 1.7 FIG00955324: hypothetical protein compare
Pf6N2E2_6099 +0.9 1.5 tRNA-Glu-TTC compare
Pf6N2E2_1774 +0.9 1.0 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2636 +0.9 2.1 FIG027190: Putative transmembrane protein compare
Pf6N2E2_647 +0.9 2.3 General secretion pathway protein G compare
Pf6N2E2_2281 +0.9 1.5 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2499 +0.9 2.6 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_4640 +0.8 1.4 hypothetical protein compare
Pf6N2E2_88 +0.8 1.9 hypothetical protein compare
Pf6N2E2_5095 +0.8 4.1 Putative inner membrane protein (Fragment) compare
Pf6N2E2_2438 +0.8 1.6 hypothetical protein compare
Pf6N2E2_988 +0.8 3.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_3240 +0.8 1.5 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5207 +0.8 1.9 hypothetical protein compare
Pf6N2E2_510 +0.8 5.7 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_5679 +0.8 2.5 hypothetical protein compare
Pf6N2E2_3219 +0.8 2.1 hypothetical protein compare
Pf6N2E2_4145 +0.8 2.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_865 +0.8 2.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4332 +0.8 3.1 hypothetical protein compare
Pf6N2E2_4427 +0.8 2.3 FIG00954215: hypothetical protein compare
Pf6N2E2_1236 +0.8 2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_3849 +0.8 1.6 FIG00954739: hypothetical protein compare
Pf6N2E2_5536 +0.8 1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_1701 +0.8 1.8 ABC transporter ATP-binding protein compare
Pf6N2E2_1455 +0.8 3.2 Xylose ABC transporter, periplasmic xylose-binding protein XylF compare
Pf6N2E2_1340 +0.8 2.3 major pilin protein fimA compare
Pf6N2E2_1140 +0.7 2.6 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_3982 +0.7 2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_3014 +0.7 1.2 P2-like prophage tail protein X compare
Pf6N2E2_3205 +0.7 1.8 Mobile element protein compare
Pf6N2E2_2693 +0.7 1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5622 +0.7 1.7 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2017 +0.7 2.5 DNA-binding protein compare
Pf6N2E2_3702 +0.7 2.6 FIG00953907: hypothetical protein compare
Pf6N2E2_2605 +0.7 3.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_924 +0.7 1.7 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1395 +0.7 2.9 Uncharacterized conserved protein compare
Pf6N2E2_2395 +0.7 3.2 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_2267 +0.7 2.5 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_962 +0.7 1.4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5847 +0.7 2.3 Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein compare
Pf6N2E2_172 +0.7 2.5 FIG00953292: hypothetical protein compare
Pf6N2E2_1342 +0.7 1.8 monooxygenase, putative compare
Pf6N2E2_465 +0.6 3.5 Probable transmembrane protein compare
Pf6N2E2_216 +0.6 1.7 Copper-sensing two-component system response regulator CpxR compare
Pf6N2E2_4464 +0.6 1.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_4955 +0.6 2.5 acetyltransferase, GNAT family compare
Pf6N2E2_2739 +0.6 1.8 UPF0339 protein NMA1193/NMA1859 compare
Pf6N2E2_217 +0.6 2.7 Signal transduction histidine kinase compare
Pf6N2E2_1162 +0.6 1.1 Transmembrane amino acid efflux protein compare
Pf6N2E2_4531 +0.6 1.1 hypothetical protein compare
Pf6N2E2_2003 +0.6 1.4 hypothetical protein compare
Pf6N2E2_4181 +0.6 0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_2580 +0.6 1.6 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2247 +0.6 1.8 Transcriptional regulator, AraC family compare
Pf6N2E2_1504 +0.6 1.3 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_237 +0.6 1.9 hypothetical protein compare
Pf6N2E2_2386 +0.6 2.1 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_6045 +0.6 0.9 hypothetical protein compare
Pf6N2E2_2682 +0.6 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_1688 +0.6 2.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_4594 +0.6 2.0 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_1506 +0.6 1.3 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2532 +0.6 3.2 Thioredoxin compare
Pf6N2E2_4710 +0.6 1.7 hypothetical protein compare
Pf6N2E2_2833 +0.6 2.2 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_2589 +0.6 2.5 Flagellar protein FliJ compare
Pf6N2E2_2477 +0.6 1.4 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_6070 +0.6 1.3 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_4206 +0.6 1.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4139 +0.6 3.9 Integral membrane protein TerC compare
Pf6N2E2_5758 +0.6 1.4 FIG00957314: hypothetical protein compare
Pf6N2E2_5188 +0.6 2.6 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1667 +0.6 1.6 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5037 +0.6 2.1 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) compare
Pf6N2E2_754 +0.6 1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3698 +0.6 1.7 Nicotinamidase family protein YcaC compare
Pf6N2E2_2842 +0.6 1.0 hypothetical protein compare
Pf6N2E2_728 +0.6 1.5 Nitrate/nitrite transporter compare
Pf6N2E2_3466 +0.6 1.8 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_868 +0.6 1.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_4415 +0.6 1.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_200 +0.6 1.8 Possible glycosyltransferase compare
Pf6N2E2_3587 +0.6 1.9 Azurin compare
Pf6N2E2_367 +0.6 1.9 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_3151 +0.5 1.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1759 +0.5 1.3 uncharacterized domain 1 compare
Pf6N2E2_2861 +0.5 2.3 hypothetical protein compare
Pf6N2E2_1860 +0.5 1.3 Ferredoxin, 2Fe-2S compare
Pf6N2E2_336 +0.5 2.0 hypothetical protein compare
Pf6N2E2_1602 +0.5 1.9 hypothetical protein compare
Pf6N2E2_1673 +0.5 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5926 +0.5 2.5 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_3171 +0.5 0.9 hypothetical protein compare
Pf6N2E2_3716 +0.5 1.5 FIG143263: Glycosyl transferase compare
Pf6N2E2_952 +0.5 1.5 putative exported protein compare
Pf6N2E2_2235 +0.5 1.8 Xanthine permease compare
Pf6N2E2_5848 +0.5 1.5 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_2158 +0.5 2.2 Signal transduction histidine kinase compare
Pf6N2E2_250 +0.5 1.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_6011 +0.5 3.5 Hyphotheical protein compare
Pf6N2E2_2195 +0.5 1.6 cI compare
Pf6N2E2_1049 +0.5 2.0 hypothetical protein compare
Pf6N2E2_3875 +0.5 1.0 FIG00953324: hypothetical protein compare
Pf6N2E2_2445 +0.5 3.0 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf6N2E2_1839 +0.5 1.3 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_3738 +0.5 1.8 General secretion pathway protein L compare
Pf6N2E2_3106 +0.5 1.5 hypothetical protein compare
Pf6N2E2_1386 +0.5 1.7 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_1161 +0.5 1.9 FIG00961921: hypothetical protein compare
Pf6N2E2_4418 +0.5 0.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1776 +0.5 1.4 Chemotaxis protein CheD compare
Pf6N2E2_4773 +0.5 0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_4307 +0.5 1.0 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_5632 +0.5 2.0 Aromatic amino acid transport protein AroP compare
Pf6N2E2_6002 +0.5 2.5 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_2681 +0.5 2.0 3-phosphoglycerate kinase compare
Pf6N2E2_1212 +0.5 2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5785 +0.5 1.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4334 +0.5 3.3 Uncharacterized protein ImpC compare
Pf6N2E2_1975 +0.5 0.9 Integrase regulator R compare
Pf6N2E2_1412 +0.5 1.5 hypothetical protein compare
Pf6N2E2_5599 +0.5 1.6 Electron transport complex protein RnfA compare
Pf6N2E2_923 +0.5 1.4 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_1691 +0.5 1.4 hypothetical protein compare
Pf6N2E2_136 +0.5 1.0 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_3725 +0.5 1.0 FIG085779: Lipoprotein compare
Pf6N2E2_5210 +0.5 1.6 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) compare
Pf6N2E2_5262 +0.5 0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5643 +0.5 2.5 hypothetical protein compare
Pf6N2E2_4052 +0.5 0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_5899 +0.5 2.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3635 +0.5 1.2 FIG00953138: hypothetical protein compare
Pf6N2E2_4615 +0.5 0.7 type IV pili signal transduction protein PilI compare
Pf6N2E2_617 +0.5 1.2 Probable glutathione S-transferase compare
Pf6N2E2_5293 +0.5 1.9 Protein sirB1 compare
Pf6N2E2_4121 +0.5 1.9 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_712 +0.5 1.3 hypothetical protein compare
Pf6N2E2_1943 +0.5 1.8 Coenzyme PQQ synthesis protein A compare
Pf6N2E2_116 +0.5 1.7 Glycosyltransferase compare
Pf6N2E2_5772 +0.5 1.7 DUF1232 domain-containing protein compare
Pf6N2E2_2061 +0.5 1.2 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_342 +0.5 0.8 DNA-binding response regulator compare
Pf6N2E2_443 +0.5 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_377 +0.5 0.8 hypothetical protein compare
Pf6N2E2_659 +0.5 1.3 Transcriptional regulatory protein ompR compare
Pf6N2E2_1884 +0.5 2.2 oxidoreductase, short-chain dehydrogenase/reductase family compare
Pf6N2E2_331 +0.5 1.0 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_476 +0.5 1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_706 +0.5 2.2 Nitric oxide reductase activation protein NorQ compare
Pf6N2E2_3386 +0.5 1.3 hypothetical protein compare
Pf6N2E2_6065 +0.5 1.1 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_4007 +0.5 1.6 FIG00956018: hypothetical protein compare
Pf6N2E2_1211 +0.5 0.9 Lactoylglutathione lyase compare
Pf6N2E2_1740 +0.5 1.3 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_2300 +0.5 1.5 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_2538 +0.5 2.2 hypothetical protein compare
Pf6N2E2_1603 +0.5 1.6 hypothetical protein compare
Pf6N2E2_5137 +0.5 1.8 FIG00956650: hypothetical protein compare
Pf6N2E2_1488 +0.5 2.2 hypothetical protein compare
Pf6N2E2_494 +0.5 1.3 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_2296 +0.5 1.4 FIG00954767: hypothetical protein compare
Pf6N2E2_1538 +0.4 1.7 Sensory histidine kinase QseC compare
Pf6N2E2_2098 +0.4 1.3 heme uptake regulator compare
Pf6N2E2_4459 +0.4 0.9 Transcriptional regulator, GntR family compare
Pf6N2E2_2456 +0.4 1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_68 +0.4 1.5 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_1843 +0.4 1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Pf6N2E2_1442 +0.4 2.1 Transcriptional regulators of sugar metabolism compare
Pf6N2E2_3494 +0.4 1.6 Acyl dehydratase compare
Pf6N2E2_6078 +0.4 2.5 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf6N2E2_5663 +0.4 1.0 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_3002 +0.4 2.6 Phage FluMu protein gp47 compare
Pf6N2E2_4521 +0.4 1.7 hypothetical protein compare
Pf6N2E2_3632 +0.4 1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_705 +0.4 2.6 Cytochrome cd1 nitrite reductase (EC:1.7.2.1) compare
Pf6N2E2_324 +0.4 2.0 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_469 +0.4 1.1 lipoprotein, putative compare
Pf6N2E2_5773 +0.4 2.0 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_1316 +0.4 1.2 P-hydroxyphenylacetate hydroxylase C1:reductase component compare
Pf6N2E2_1821 +0.4 0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2666 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments