Experiment set5IT094 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Hydroxide 0.05 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5006 -4.8 -8.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5068 -4.6 -12.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_178 -4.3 -2.1 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3658 -3.8 -5.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5242 -3.5 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5069 -3.3 -4.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2274 -3.2 -5.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_144 -3.2 -17.0 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5337 -3.1 -5.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5523 -3.1 -5.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_5671 -3.1 -3.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3661 -2.9 -4.0 hypothetical protein compare
Pf6N2E2_3941 -2.9 -3.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3617 -2.8 -6.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5430 -2.8 -8.8 Transglycosylase, Slt family compare
Pf6N2E2_145 -2.7 -7.1 putative exported protein compare
Pf6N2E2_2181 -2.7 -2.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5178 -2.7 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3303 -2.7 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5339 -2.6 -6.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5014 -2.5 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3659 -2.5 -5.6 Protein fixF compare
Pf6N2E2_2318 -2.5 -7.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5425 -2.4 -1.6 hypothetical protein compare
Pf6N2E2_2707 -2.3 -4.6 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_6057 -2.3 -3.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4153 -2.3 -1.5 Sensory box histidine kinase compare
Pf6N2E2_2201 -2.3 -4.7 Transmembrane regulator protein PrtR compare
Pf6N2E2_5527 -2.2 -2.5 Cold shock protein CspC compare
Pf6N2E2_4803 -2.2 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4159 -2.2 -3.8 Cytochrome c4 compare
Pf6N2E2_5155 -2.2 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5705 -2.2 -2.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5929 -2.1 -4.9 FIG00954461: hypothetical protein compare
Pf6N2E2_3198 -2.1 -1.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2320 -2.1 -2.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2313 -2.1 -3.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3612 -2.1 -2.4 HflK protein compare
Pf6N2E2_4764 -2.0 -4.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5761 -2.0 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2574 -2.0 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_2527 -2.0 -4.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4762 -1.9 -3.4 Biotin synthesis protein BioH compare
Pf6N2E2_2219 -1.9 -2.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2753 -1.9 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_2311 -1.9 -6.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_623 -1.9 -1.8 FIG00954674: hypothetical protein compare
Pf6N2E2_4761 -1.9 -8.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2508 -1.9 -3.8 hypothetical protein compare
Pf6N2E2_5338 -1.8 -6.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2675 -1.8 -1.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2549 -1.8 -2.1 hypothetical protein compare
Pf6N2E2_339 -1.8 -3.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2264 -1.8 -3.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2506 -1.7 -9.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4963 -1.7 -2.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_4678 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_5150 -1.7 -4.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3607 -1.7 -6.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5727 -1.7 -5.2 FIG00955360: hypothetical protein compare
Pf6N2E2_4372 -1.7 -4.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3656 -1.7 -4.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_2189 -1.7 -3.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2510 -1.6 -3.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2310 -1.6 -6.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2126 -1.6 -5.1 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_4531 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4889 -1.6 -5.0 Putative transport protein compare
Pf6N2E2_3713 -1.6 -1.7 Acyl carrier protein compare
Pf6N2E2_4759 -1.5 -9.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2507 -1.5 -5.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4763 -1.5 -7.3 Biotin synthesis protein BioC compare
Pf6N2E2_2317 -1.5 -3.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1966 -1.5 -1.6 SAM-dependent methyltransferases compare
Pf6N2E2_5128 -1.5 -3.9 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_3611 -1.5 -1.4 HflC protein compare
Pf6N2E2_3834 -1.5 -5.8 Lipoprotein NlpD compare
Pf6N2E2_4181 -1.4 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_2825 -1.4 -3.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_70 -1.4 -2.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2013 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_3786 -1.4 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_5739 -1.4 -1.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_6058 -1.4 -4.3 FIG139976: hypothetical protein compare
Pf6N2E2_4987 -1.4 -1.1 MaoC-like domain protein compare
Pf6N2E2_2127 -1.4 -3.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2218 -1.4 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2822 -1.3 -5.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_238 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_1173 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_734 -1.3 -2.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_3260 -1.3 -3.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_6064 -1.3 -4.4 2-methylaconitate isomerase compare
Pf6N2E2_648 -1.3 -1.5 General secretion pathway protein K compare
Pf6N2E2_5986 -1.3 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1691 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_2384 -1.3 -3.3 CmpX compare
Pf6N2E2_3122 -1.3 -1.3 Chemotaxis signal transduction protein compare
Pf6N2E2_3635 -1.3 -2.4 FIG00953138: hypothetical protein compare
Pf6N2E2_5452 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_3839 -1.2 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1987 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_6061 -1.2 -5.0 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_4541 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_2261 -1.2 -4.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3285 -1.2 -2.0 Rod shape-determining protein MreD compare
Pf6N2E2_4352 -1.2 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_841 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_2278 -1.2 -8.4 Transcription-repair coupling factor compare
Pf6N2E2_2646 -1.2 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_3529 -1.2 -1.8 Toxin A compare
Pf6N2E2_3300 -1.2 -2.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4990 -1.2 -3.3 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_5207 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_5406 -1.2 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_3655 -1.2 -7.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5944 -1.2 -4.3 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2217 -1.1 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4584 -1.1 -2.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5156 -1.1 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3782 -1.1 -2.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5544 -1.1 -5.2 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1031 -1.1 -2.1 Alkanesulfonates transport system permease protein compare
Pf6N2E2_1499 -1.1 -2.7 ABC transporter amino acid-binding protein compare
Pf6N2E2_5746 -1.1 -2.2 Cobalamin synthase compare
Pf6N2E2_2487 -1.1 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_1323 -1.1 -2.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5605 -1.1 -2.6 FxsA protein compare
Pf6N2E2_2010 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_6038 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_5536 -1.1 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4611 -1.1 -2.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3664 -1.1 -3.9 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1152 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_3842 -1.1 -3.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1545 -1.1 -3.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3100 -1.1 -1.7 FIG00953063: hypothetical protein compare
Pf6N2E2_613 -1.1 -1.3 lipoprotein, putative compare
Pf6N2E2_1083 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4205 -1.0 -2.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1162 -1.0 -1.3 Transmembrane amino acid efflux protein compare
Pf6N2E2_2473 -1.0 -1.2 Major outer membrane lipoprotein I compare
Pf6N2E2_6063 -1.0 -4.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3074 -1.0 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_3521 -1.0 -4.2 Sensor histidine kinase/response regulator compare
Pf6N2E2_4279 -1.0 -5.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5906 -1.0 -2.2 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_4416 -1.0 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_441 -1.0 -2.4 FIG00958773: hypothetical protein compare
Pf6N2E2_4187 -1.0 -3.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4453 -1.0 -7.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1443 -1.0 -1.8 putative aldo/keto reductase compare
Pf6N2E2_600 -1.0 -2.0 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3461 -1.0 -1.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4631 -1.0 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_3477 -1.0 -1.2 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_1636 -1.0 -5.0 Ferrichrome-iron receptor compare
Pf6N2E2_2064 -1.0 -2.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5226 -0.9 -1.2 FIG00955589: hypothetical protein compare
Pf6N2E2_5816 -0.9 -1.6 Smr domain protein compare
Pf6N2E2_3840 -0.9 -3.0 FIG00956267: hypothetical protein compare
Pf6N2E2_5584 -0.9 -2.0 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_4601 -0.9 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4585 -0.9 -5.4 Cell division protein FtsX compare
Pf6N2E2_3328 -0.9 -1.1 transcriptional regulator compare
Pf6N2E2_1635 -0.9 -3.4 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_189 -0.9 -1.4 regulatory protein, putative compare
Pf6N2E2_3258 -0.9 -2.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3252 -0.9 -3.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_1299 -0.9 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2111 -0.9 -1.9 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_2193 -0.9 -3.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5494 -0.9 -2.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3792 -0.9 -3.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2708 -0.9 -2.9 Lactam utilization protein LamB compare
Pf6N2E2_2706 -0.9 -1.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1792 -0.9 -1.8 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_5049 -0.9 -1.8 acetyltransferase, GNAT family compare
Pf6N2E2_3014 -0.9 -1.6 P2-like prophage tail protein X compare
Pf6N2E2_546 -0.9 -1.5 FIG00966904: hypothetical protein compare
Pf6N2E2_3024 -0.9 -2.1 Phage tail fibers compare
Pf6N2E2_6140 -0.9 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2440 -0.9 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_4556 -0.9 -1.5 FIG00953078: hypothetical protein compare
Pf6N2E2_5571 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_48 -0.8 -1.3 FIG00955661: hypothetical protein compare
Pf6N2E2_4276 -0.8 -2.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1917 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_5560 -0.8 -1.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_1676 -0.8 -1.2 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_84 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1147 -0.8 -1.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2501 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_1492 -0.8 -1.5 No significant database matches compare
Pf6N2E2_302 -0.8 -2.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3192 -0.8 -2.1 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3505 -0.8 -1.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1099 -0.8 -1.4 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2465 -0.8 -4.3 Cys regulon transcriptional activator CysB compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium Hydroxide across organisms