Experiment set5IT094 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_18HR_ZN21A

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -4.1 -4.8 thiamine-phosphate kinase compare
CSW01_02890 -2.8 -12.2 aspartate kinase compare
CSW01_07190 -2.6 -7.2 transcriptional regulator FNR compare
CSW01_05575 -2.5 -4.3 phosphate acetyltransferase compare
CSW01_01300 -2.5 -4.6 sugar ABC transporter compare
CSW01_09350 -2.1 -14.3 formate C-acetyltransferase compare
CSW01_10190 -1.9 -6.6 nucleoid-associated protein compare
CSW01_08240 -1.9 -2.2 ATP-binding protein compare
CSW01_09365 -1.8 -7.5 pyruvate formate lyase 1-activating protein compare
CSW01_09240 -1.8 -5.2 Holliday junction branch migration DNA helicase RuvB compare
CSW01_12815 -1.7 -7.4 RNA polymerase sigma-54 factor compare
CSW01_03950 -1.7 -3.7 hypothetical protein compare
CSW01_09420 -1.6 -2.8 DUF2062 domain-containing protein compare
CSW01_08450 -1.6 -2.8 antimicrobial peptide ABC transporter permease SapB compare
CSW01_13805 -1.6 -3.8 Hsp33 family molecular chaperone HslO compare
CSW01_04930 -1.5 -5.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_05265 -1.5 -1.8 methionine--tRNA ligase compare
CSW01_10560 -1.5 -4.7 chorismate synthase compare
CSW01_00495 -1.5 -2.2 SOS-response transcriptional repressor compare
CSW01_01295 -1.5 -2.0 ABC transporter permease compare
CSW01_13285 -1.5 -2.5 ribulose-phosphate 3-epimerase compare
CSW01_12260 -1.4 -6.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
CSW01_11690 -1.4 -9.5 hypothetical protein compare
CSW01_00095 -1.4 -3.4 hypothetical protein compare
CSW01_04820 -1.3 -8.1 serine hydroxymethyltransferase compare
CSW01_03155 -1.3 -7.2 RNA polymerase-binding transcription factor DksA compare
CSW01_09525 -1.3 -0.8 DNA translocase FtsK compare
CSW01_11730 -1.3 -2.4 2-dehydropantoate 2-reductase compare
CSW01_03410 -1.3 -2.3 polyribonucleotide nucleotidyltransferase compare
CSW01_01515 -1.3 -3.0 type II 3-dehydroquinate dehydratase compare
CSW01_04940 -1.2 -1.5 hypothetical protein compare
CSW01_10390 -1.2 -2.6 ferrous iron transport protein A compare
CSW01_03985 -1.2 -3.5 GMP synthase (glutamine-hydrolyzing) compare
CSW01_12875 -1.2 -9.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
CSW01_03785 -1.2 -2.5 phosphate ABC transporter permease compare
CSW01_04850 -1.1 -4.9 septal ring lytic transglycosylase RlpA compare
CSW01_13300 -1.1 -5.3 3-dehydroquinate synthase compare
CSW01_05580 -1.1 -4.7 acetate kinase compare
CSW01_08465 -1.1 -1.8 ABC transporter ATP-binding protein compare
CSW01_11705 -1.1 -7.2 MFS transporter compare
CSW01_14055 -1.1 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_02500 -1.1 -6.8 deoxyribonuclease compare
CSW01_12365 -1.1 -2.1 inorganic phosphate transporter compare
CSW01_04390 -1.1 -2.3 outer membrane protein assembly factor BamE compare
CSW01_03870 -1.1 -1.2 inositol monophosphatase compare
CSW01_14910 -1.1 -1.9 cold-shock protein compare
CSW01_04375 -1.1 -3.0 SsrA-binding protein compare
CSW01_03790 -1.0 -2.9 phosphate ABC transporter, permease protein PstA compare
CSW01_09245 -1.0 -3.2 Holliday junction branch migration protein RuvA compare
CSW01_13420 -1.0 -2.3 elongation factor P--(R)-beta-lysine ligase compare
CSW01_03475 -1.0 -2.8 ATP-dependent RNA helicase SrmB compare
CSW01_12250 -1.0 -4.7 site-specific tyrosine recombinase XerD compare
CSW01_00560 -1.0 -2.5 DNA polymerase I compare
CSW01_13305 -1.0 -1.6 shikimate kinase compare
CSW01_00650 -1.0 -5.1 tyrosine recombinase XerC compare
CSW01_15870 -1.0 -2.0 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_08620 -1.0 -6.9 chromosome partition protein MukB compare
CSW01_16950 -1.0 -5.8 ATP-dependent endonuclease compare
CSW01_08625 -1.0 -4.1 chromosome partition protein MukE compare
CSW01_03745 -0.9 -2.0 ferredoxin compare
CSW01_10875 -0.9 -2.8 redox-regulated ATPase YchF compare
CSW01_10750 -0.9 -3.2 outer membrane protein assembly factor BamC compare
CSW01_01015 -0.9 -6.9 DNA helicase II compare
CSW01_01445 -0.9 -7.9 lysine decarboxylase compare
CSW01_18350 -0.9 -0.9 cell division protein DedD compare
CSW01_01845 -0.9 -5.8 protease modulator HflK compare
CSW01_04845 -0.9 -3.9 D-alanyl-D-alanine carboxypeptidase compare
CSW01_08705 -0.9 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_09620 -0.9 -2.5 trigger factor compare
CSW01_10385 -0.9 -6.1 Fe(2+) transporter permease subunit FeoB compare
CSW01_10165 -0.9 -6.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_13505 -0.9 -6.5 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
CSW01_04660 -0.8 -6.4 PTS trehalose transporter subunit IIBC compare
CSW01_03795 -0.8 -1.0 phosphate ABC transporter ATP-binding protein compare
CSW01_01725 -0.8 -3.2 TetR family transcriptional regulator compare
CSW01_14325 -0.8 -3.8 peptidase compare
CSW01_09515 -0.8 -5.4 Na+/H+ antiporter NhaB compare
CSW01_01440 -0.8 -6.5 lysine:cadaverine antiporter compare
CSW01_09185 -0.8 -3.1 tol-pal system protein YbgF compare
CSW01_05340 -0.8 -4.4 LysR family transcriptional regulator compare
CSW01_02875 -0.8 -3.5 DNA recombination/repair protein RecA compare
CSW01_07460 -0.8 -1.4 ribosome modulation factor compare
CSW01_01435 -0.7 -6.4 transcriptional regulator CadC compare
CSW01_07210 -0.7 -2.0 hypothetical protein compare
CSW01_01405 -0.7 -1.6 DNA-binding protein HU-alpha compare
CSW01_08630 -0.7 -3.6 condensin subunit F compare
CSW01_17855 -0.7 -5.2 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_05195 -0.7 -2.7 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_16800 -0.7 -4.9 anaerobic ribonucleoside-triphosphate reductase compare
CSW01_17090 -0.7 -4.0 SPOR domain-containing protein compare
CSW01_12130 -0.7 -2.6 DUF721 domain-containing protein compare
CSW01_10485 -0.7 -1.1 DUF2788 domain-containing protein compare
CSW01_03075 -0.7 -2.4 phosphoheptose isomerase compare
CSW01_14680 -0.7 -1.2 aminotransferase compare
CSW01_00235 -0.7 -2.4 peptide deformylase compare
CSW01_16325 -0.7 -1.3 hypothetical protein compare
CSW01_08990 -0.7 -2.4 glyoxalase compare
CSW01_00450 -0.7 -1.1 SCP2 domain-containing protein compare
CSW01_00615 -0.7 -1.7 hypothetical protein compare
CSW01_17275 -0.6 -0.9 large conductance mechanosensitive channel protein MscL compare
CSW01_11325 -0.6 -2.4 DUF3149 domain-containing protein compare
CSW01_01850 -0.6 -2.7 protease modulator HflC compare
CSW01_04935 -0.6 -0.9 phosphocarrier protein HPr compare
CSW01_08395 -0.6 -3.9 cardiolipin synthase compare
CSW01_07500 -0.6 -1.0 DUF2835 domain-containing protein compare
CSW01_01490 -0.6 -1.9 Fis family transcriptional regulator compare
CSW01_05020 -0.6 -2.3 regulatory protein ToxS compare
CSW01_08435 -0.6 -2.0 phage shock protein PspA compare
CSW01_04360 -0.6 -1.7 IS5/IS1182 family transposase compare
CSW01_09955 -0.6 -3.1 L-asparaginase 1 compare
CSW01_13435 -0.6 -4.0 fumarate reductase subunit C compare
CSW01_02450 -0.6 -4.2 pyrroline-5-carboxylate reductase compare
CSW01_16590 -0.6 -1.1 N-acetyltransferase compare
CSW01_06585 -0.6 -1.9 fumarate hydratase compare
CSW01_01965 -0.6 -0.7 glucose-6-phosphate isomerase compare
CSW01_00540 -0.6 -1.2 hypothetical protein compare
CSW01_13155 -0.6 -4.7 ribonuclease R compare
CSW01_05280 -0.6 -2.5 uridine kinase compare
CSW01_06005 -0.6 -2.6 vancomycin high temperature exclusion protein compare
CSW01_00085 -0.6 -2.2 heat-shock protein Hsp20 compare
CSW01_06405 -0.6 -3.6 murein L,D-transpeptidase compare
CSW01_02490 -0.6 -2.8 glutathione synthetase compare
CSW01_02755 -0.6 -1.2 glutamyl-tRNA amidotransferase compare
CSW01_07145 -0.5 -2.1 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_13440 -0.5 -3.2 fumarate reductase subunit D compare
CSW01_12480 -0.5 -1.0 sigma-E factor negative regulatory protein RseA compare
CSW01_00400 -0.5 -2.0 hypothetical protein compare
CSW01_13410 -0.5 -2.9 protein-export protein SecB compare
CSW01_18250 -0.5 -1.9 co-chaperone GroES compare
CSW01_18315 -0.5 -2.1 methyltransferase compare
CSW01_16435 -0.5 -1.0 DUF3265 domain-containing protein compare
CSW01_15310 -0.5 -1.6 exoribonuclease R compare
CSW01_15005 -0.5 -1.6 HNH endonuclease compare
CSW01_16285 -0.5 -1.3 acetyltransferase compare
CSW01_05025 -0.5 -2.7 transcriptional regulator compare
CSW01_12680 -0.5 -3.4 cytosol aminopeptidase compare
CSW01_12405 -0.5 -4.4 GTP diphosphokinase compare
CSW01_13425 -0.5 -4.5 fumarate reductase (quinol) flavoprotein subunit compare
CSW01_07605 -0.5 -2.0 molecular chaperone compare
CSW01_19395 -0.5 -0.9 histidine kinase compare
CSW01_17470 -0.5 -3.2 DUF3069 domain-containing protein compare
CSW01_08585 -0.5 -1.3 DUF4250 domain-containing protein compare
CSW01_11785 -0.5 -0.7 exonuclease V subunit gamma compare
CSW01_14455 -0.5 -1.6 hypothetical protein compare
CSW01_09035 -0.5 -2.2 IclR family transcriptional regulator compare
CSW01_10075 -0.5 -2.9 endolytic transglycosylase MltG compare
CSW01_13620 -0.5 -4.2 aspartate ammonia-lyase compare
CSW01_07150 -0.5 -0.7 spermidine/putrescine ABC transporter permease PotC compare
CSW01_12320 -0.5 -0.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_04195 -0.5 -3.4 class I SAM-dependent methyltransferase compare
CSW01_00280 -0.5 -3.3 shikimate dehydrogenase compare
CSW01_03025 -0.5 -2.3 hypothetical protein compare
CSW01_13670 -0.5 -1.5 DNA-directed RNA polymerase subunit omega compare
CSW01_01800 -0.5 -1.1 tRNA-Met compare
CSW01_01195 -0.5 -0.6 ADP-heptose--LPS heptosyltransferase I compare
CSW01_00215 -0.5 -3.3 potassium uptake protein TrkH compare
CSW01_17745 -0.5 -1.4 diacylglycerol kinase compare
CSW01_01465 -0.5 -3.3 ketohydroxyglutarate aldolase compare
CSW01_07890 -0.5 -1.8 hypothetical protein compare
CSW01_10145 -0.5 -1.9 ribonuclease E compare
CSW01_06315 -0.5 -2.5 DUF3943 domain-containing protein compare
CSW01_18310 -0.5 -0.6 hypothetical protein compare
CSW01_09520 -0.5 -1.5 disulfide bond formation protein B compare
CSW01_05350 -0.5 -2.4 hypothetical protein compare
CSW01_01110 -0.5 -3.3 YicC family protein compare
CSW01_04585 -0.5 -1.9 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_11755 -0.4 -2.8 murein transglycosylase compare
CSW01_13185 -0.4 -2.5 peptidylprolyl isomerase compare
CSW01_03415 -0.4 -2.3 lipoprotein NlpI compare
CSW01_02315 -0.4 -3.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_10510 -0.4 -2.1 DUF4442 domain-containing protein compare
CSW01_16265 -0.4 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_18420 -0.4 -1.6 hypothetical protein compare
CSW01_14470 -0.4 -2.5 DUF134 domain-containing protein compare
CSW01_18270 -0.4 -1.1 L-ectoine synthase compare
CSW01_05890 -0.4 -2.2 hypothetical protein compare
CSW01_17215 -0.4 -2.1 multidrug transporter compare
CSW01_11935 -0.4 -3.0 sodium:alanine symporter family protein compare
CSW01_05480 -0.4 -1.3 hypothetical protein compare
CSW01_13485 -0.4 -2.8 5-carboxymethyl-2-hydroxymuconate isomerase compare
CSW01_08425 -0.4 -1.8 envelope stress response membrane protein PspC compare
CSW01_11565 -0.4 -1.0 transcriptional regulator NrdR compare
CSW01_12750 -0.4 -0.8 BolA family transcriptional regulator compare
CSW01_04155 -0.4 -1.3 ferredoxin family protein compare
CSW01_06280 -0.4 -2.4 succinylglutamate desuccinylase compare
CSW01_03095 -0.4 -1.9 hypothetical protein compare
CSW01_01215 -0.4 -3.0 capsular biosynthesis protein compare
CSW01_17295 -0.4 -2.6 molybdopterin molybdotransferase compare
CSW01_17665 -0.4 -1.6 hypothetical protein compare
CSW01_10290 -0.4 -1.8 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_01250 -0.4 -3.4 polymerase compare
CSW01_18735 -0.4 -1.9 hypothetical protein compare
CSW01_12465 -0.4 -1.7 elongation factor 4 compare
CSW01_19435 -0.4 -0.8 hypothetical protein compare
CSW01_05075 -0.4 -3.4 PTS N-acetylmuramic acid transporter subunit IIBC compare
CSW01_07820 -0.4 -1.1 RidA family protein compare
CSW01_15680 -0.4 -0.9 DUF3265 domain-containing protein compare
CSW01_17410 -0.4 -1.3 transporter compare
CSW01_17585 -0.4 -0.7 periplasmic nitrate reductase electron transfer subunit compare
CSW01_14080 -0.4 -0.5 DUF3283 domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids in Vibrio cholerae E7946 ATCC 55056

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms