Experiment set5IT094 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_18HR_ZN21A

200 most detrimental genes:

  gene name fitness t score description  
CSW01_18560 +1.3 1.6 hypothetical protein compare
CSW01_17830 +1.2 2.3 hypothetical protein compare
CSW01_16690 +1.2 2.3 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_01325 +1.2 4.0 acetyltransferase compare
CSW01_10335 +1.1 8.4 RNA polymerase sigma factor FliA compare
CSW01_11250 +1.1 6.3 molecular chaperone compare
CSW01_10620 +1.1 8.3 flagellar hook-length control protein FliK compare
CSW01_08070 +1.0 1.4 hypothetical protein compare
CSW01_10300 +0.9 4.3 chemotaxis protein CheW compare
CSW01_03845 +0.9 1.3 hypothetical protein compare
CSW01_09440 +0.9 5.5 PilZ domain-containing protein compare
CSW01_10035 +0.9 1.9 YnhF family membrane protein compare
CSW01_02110 +0.8 6.3 MSHA biogenesis protein MshJ compare
CSW01_08685 +0.8 3.0 glycogen synthase compare
CSW01_04580 +0.8 6.2 flagellar motor protein MotB compare
CSW01_02115 +0.8 5.5 MSHA biogenesis protein MshK compare
CSW01_01320 +0.8 6.9 acyl-CoA reductase compare
CSW01_03070 +0.8 2.2 hemolysin compare
CSW01_10655 +0.8 3.0 flagellar hook-basal body complex protein FliE compare
CSW01_12755 +0.8 2.1 anti-sigma B factor antagonist compare
CSW01_11195 +0.8 4.5 flagellar L-ring protein compare
CSW01_10155 +0.8 1.7 C4-dicarboxylate ABC transporter compare
CSW01_10680 +0.8 4.2 flagellar protein FliT compare
CSW01_01280 +0.8 7.1 GDP-mannose 4,6-dehydratase compare
CSW01_13165 +0.8 6.3 sel1 repeat family protein compare
CSW01_11170 +0.7 6.0 flagellin A compare
CSW01_10685 +0.7 6.2 flagellar hook-associated protein 2 compare
CSW01_02170 +0.7 6.1 type II secretion system protein compare
CSW01_11265 +0.7 5.3 flagellar basal-body protein compare
CSW01_02140 +0.7 6.4 type II secretion system F family protein compare
CSW01_10590 +0.7 3.0 flagellar biosynthetic protein FliQ compare
CSW01_02160 +0.7 5.2 MSHA pilin protein MshC compare
CSW01_05130 +0.7 5.2 flagellar protein MotY compare
CSW01_02175 +0.7 5.0 MSHA biogenesis protein MshP compare
CSW01_19240 +0.7 2.1 DUF2999 domain-containing protein compare
CSW01_11210 +0.7 4.9 flagellar hook protein FlgE compare
CSW01_10670 +0.7 5.3 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_11175 +0.7 4.4 flagellar hook-associated protein 3 compare
CSW01_02105 +0.7 6.0 MSHA biogenesis protein MshI compare
CSW01_10660 +0.7 5.5 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_04575 +0.7 4.3 flagellar motor protein PomA compare
CSW01_02130 +0.7 5.6 MSHA biogenesis protein MshN compare
CSW01_10665 +0.7 5.8 PAS domain-containing sensor histidine kinase compare
CSW01_10500 +0.7 2.6 CidA/LrgA family protein compare
CSW01_05925 +0.7 3.1 tryptophan synthase subunit alpha compare
CSW01_00415 +0.7 1.5 hypothetical protein compare
CSW01_02180 +0.7 6.4 MSHA biogenesis protein MshQ compare
CSW01_10745 +0.6 1.7 DUF2897 domain-containing protein compare
CSW01_10675 +0.6 3.2 flagellar protein FliS compare
CSW01_02120 +0.6 5.6 pilus (MSHA type) biogenesis protein MshL compare
CSW01_02135 +0.6 5.5 MSHA biogenesis protein MshE compare
CSW01_09920 +0.6 1.6 chromosome partitioning protein ParA compare
CSW01_06375 +0.6 1.5 hypothetical protein compare
CSW01_01275 +0.6 5.8 phosphomannomutase/phosphoglucomutase compare
CSW01_02155 +0.6 3.6 MSHA pilin protein MshA compare
CSW01_18835 +0.6 1.8 acyl-CoA thioesterase compare
CSW01_05660 +0.6 2.5 dethiobiotin synthase compare
CSW01_01310 +0.6 5.7 long-chain fatty acid--CoA ligase compare
CSW01_01290 +0.6 4.8 rfbG protein compare
CSW01_10700 +0.6 4.3 flagellin D compare
CSW01_09990 +0.6 1.6 hypothetical protein compare
CSW01_10630 +0.6 3.3 flagella biosynthesis chaperone FliJ compare
CSW01_11180 +0.6 4.7 flagellar hook-associated protein FlgK compare
CSW01_10345 +0.6 4.4 flagellar biosynthesis protein FlhF compare
CSW01_18840 +0.6 2.5 hypothetical protein compare
CSW01_17675 +0.6 4.5 GGDEF domain-containing protein compare
CSW01_17395 +0.6 1.7 hypothetical protein compare
CSW01_01305 +0.6 2.5 acyl carrier protein compare
CSW01_12515 +0.6 1.6 DUF1107 domain-containing protein compare
CSW01_07900 +0.6 2.3 hypothetical protein compare
CSW01_02165 +0.6 4.2 MSHA pilin protein MshD compare
CSW01_02460 +0.6 4.1 type IV pili twitching motility protein PilT compare
CSW01_06860 +0.5 1.5 siroheme synthase compare
CSW01_10650 +0.5 4.5 flagellar basal body M-ring protein FliF compare
CSW01_07580 +0.5 0.7 hypothetical protein compare
CSW01_01315 +0.5 4.1 NAD-dependent alcohol dehydrogenase compare
CSW01_06035 +0.5 1.4 hypothetical protein compare
CSW01_10595 +0.5 3.2 flagellar biosynthetic protein FliP compare
CSW01_15695 +0.5 1.6 DUF3265 domain-containing protein compare
CSW01_01270 +0.5 4.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
CSW01_11190 +0.5 3.6 flagellar P-ring protein compare
CSW01_02150 +0.5 3.2 MSHA biogenesis protein MshB compare
CSW01_18890 +0.5 2.1 peptidyl-prolyl cis-trans isomerase compare
CSW01_16665 +0.5 2.3 nucleotide pyrophosphohydrolase compare
CSW01_12245 +0.5 3.2 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
CSW01_10295 +0.5 1.5 DUF2802 domain-containing protein compare
CSW01_10350 +0.5 4.5 flagellar biosynthesis protein FlhA compare
CSW01_19210 +0.5 0.6 DUF3081 domain-containing protein compare
CSW01_01350 +0.5 4.5 polysaccharide biosynthesis protein compare
CSW01_02125 +0.5 4.0 MSHA biogenesis protein MshM compare
CSW01_11205 +0.5 3.4 flagellar basal-body rod protein FlgF compare
CSW01_17115 +0.5 2.3 SgrR family transcriptional regulator compare
CSW01_03655 +0.5 4.0 murein transglycosylase compare
CSW01_16585 +0.5 1.7 acetyltransferase compare
CSW01_01425 +0.5 0.8 phosphoribosylamine--glycine ligase compare
CSW01_10640 +0.5 3.7 flagellar assembly protein FliH compare
CSW01_13445 +0.5 0.7 elongation factor P compare
CSW01_10280 +0.5 2.6 heme exporter protein C compare
CSW01_15380 +0.5 2.2 hypothetical protein compare
CSW01_16655 +0.5 1.9 hypothetical protein compare
CSW01_15845 +0.5 2.1 DUF3265 domain-containing protein compare
CSW01_11375 +0.5 3.6 TIGR03503 family protein compare
CSW01_11215 +0.5 2.0 flagellar hook assembly protein FlgD compare
CSW01_18360 +0.5 1.3 hypothetical protein compare
CSW01_12575 +0.5 2.7 transcriptional regulator LeuO compare
CSW01_01285 +0.5 3.9 perosamine synthetase compare
CSW01_10600 +0.5 2.3 flagellar biosynthetic protein FliO compare
CSW01_06335 +0.5 2.0 (2Fe-2S)-binding protein compare
CSW01_08495 +0.5 2.2 hypothetical protein compare
CSW01_08700 +0.5 2.2 DUF2498 domain-containing protein compare
CSW01_14400 +0.5 1.9 hypothetical protein compare
CSW01_08085 +0.5 2.9 ABC transporter permease compare
CSW01_11225 +0.5 3.1 flagellar basal body rod protein FlgB compare
CSW01_17905 +0.5 2.0 aquaporin family protein compare
CSW01_10585 +0.4 3.5 flagellar type III secretion system protein FliR compare
CSW01_11200 +0.4 3.1 flagellar basal-body rod protein FlgG compare
CSW01_09295 +0.4 2.2 hypothetical protein compare
CSW01_01345 +0.4 4.0 glycosyl transferase family 1 compare
CSW01_17600 +0.4 2.8 HDIG domain-containing protein compare
CSW01_17885 +0.4 1.6 hypothetical protein compare
CSW01_08075 +0.4 3.1 TolC family protein compare
CSW01_17135 +0.4 1.5 hypothetical protein compare
CSW01_16275 +0.4 1.3 hypothetical protein compare
CSW01_05455 +0.4 2.2 MFS transporter compare
CSW01_17050 +0.4 2.9 histidine kinase compare
CSW01_08165 +0.4 1.5 carboxynorspermidine synthase compare
CSW01_00675 +0.4 0.7 hypothetical protein compare
CSW01_12610 +0.4 0.9 3-isopropylmalate dehydratase small subunit compare
CSW01_03270 +0.4 2.1 hypothetical protein compare
CSW01_10605 +0.4 0.7 flagellar motor switch protein FliN compare
CSW01_07140 +0.4 1.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_10580 +0.4 3.1 flagellar biosynthesis protein FlhB compare
CSW01_08090 +0.4 2.6 ABC transporter permease compare
CSW01_06460 +0.4 2.8 MarR family transcriptional regulator compare
CSW01_06050 +0.4 1.7 DUF2786 domain-containing protein compare
CSW01_05010 +0.4 2.3 phosphodiesterase compare
CSW01_03815 +0.4 1.3 peroxidase compare
CSW01_05425 +0.4 3.0 hypothetical protein compare
CSW01_17750 +0.4 0.5 cytochrome B compare
CSW01_01975 +0.4 2.9 chemotaxis protein CheX compare
CSW01_19010 +0.4 1.9 methyl-accepting chemotaxis protein compare
CSW01_05295 +0.4 1.5 low molecular weight phosphotyrosine protein phosphatase compare
CSW01_14085 +0.4 0.8 transcriptional regulator compare
CSW01_05785 +0.4 2.1 23S rRNA pseudouridine synthase E compare
CSW01_18020 +0.4 1.9 DEAD/DEAH box helicase compare
CSW01_14245 +0.4 1.3 hypothetical protein compare
CSW01_07240 +0.4 2.8 histidine kinase compare
CSW01_16960 +0.4 2.0 DUF475 domain-containing protein compare
CSW01_12760 +0.4 1.9 phospholipid-binding protein MlaC compare
CSW01_12775 +0.4 2.8 phospholipid ABC transporter ATP-binding protein MlaF compare
CSW01_06235 +0.4 1.1 hypothetical protein compare
CSW01_01915 +0.4 1.4 bacterioferritin-associated ferredoxin compare
CSW01_06835 +0.4 1.4 BAX inhibitor protein compare
CSW01_10635 +0.4 2.6 flagellum-specific ATP synthase FliI compare
CSW01_00515 +0.4 1.3 hypothetical protein compare
CSW01_04655 +0.4 2.5 HTH-type transcriptional regulator TreR compare
CSW01_13845 +0.4 1.2 hypothetical protein compare
CSW01_08275 +0.4 2.3 HAD family phosphatase compare
CSW01_09275 +0.4 1.3 hypothetical protein compare
CSW01_17795 +0.4 1.5 molybdenum import ATP-binding protein ModC compare
CSW01_00110 +0.4 1.9 hypothetical protein compare
CSW01_14920 +0.4 1.2 NADH:ubiquinone oxidoreductase compare
CSW01_10440 +0.4 1.0 succinate dehydrogenase flavoprotein subunit compare
CSW01_18120 +0.4 1.4 DUF2238 domain-containing protein compare
CSW01_12845 +0.4 2.8 metalloprotease PmbA compare
CSW01_03705 +0.4 3.2 chaperone protein ClpB compare
CSW01_09605 +0.4 1.8 endopeptidase La compare
CSW01_11220 +0.4 1.1 flagellar basal body rod protein FlgC compare
CSW01_10235 +0.4 1.7 hypothetical protein compare
CSW01_10740 +0.4 0.9 peptidase M15 compare
CSW01_10255 +0.4 0.9 cytochrome c-type biogenesis protein CcmH compare
CSW01_18230 +0.4 1.9 agmatinase compare
CSW01_00080 +0.4 1.1 hypothetical protein compare
CSW01_05120 +0.4 2.3 sodium:proton antiporter compare
CSW01_17200 +0.3 1.0 DUF333 domain-containing protein compare
CSW01_05845 +0.3 2.5 HDOD domain-containing protein compare
CSW01_05395 +0.3 2.7 protease SohB compare
CSW01_01360 +0.3 1.9 sugar transferase compare
CSW01_00870 +0.3 1.6 cytochrome c5 family protein compare
CSW01_07135 +0.3 2.0 chromosome partitioning protein ParA compare
CSW01_10730 +0.3 1.4 ArsC family reductase compare
CSW01_02085 +0.3 2.1 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_01190 +0.3 2.1 glycosyltransferase family 2 protein compare
CSW01_14835 +0.3 0.8 SIMPL domain-containing protein compare
CSW01_08520 +0.3 0.8 hypothetical protein compare
CSW01_03610 +0.3 2.3 N-acetylmuramic acid 6-phosphate etherase compare
CSW01_18865 +0.3 1.5 spermidine acetyltransferase compare
CSW01_05360 +0.3 1.2 adenine phosphoribosyltransferase compare
CSW01_16980 +0.3 1.0 hypothetical protein compare
CSW01_17785 +0.3 1.3 hypothetical protein compare
CSW01_04995 +0.3 2.1 co-chaperone YbbN compare
CSW01_09495 +0.3 1.1 histidine triad nucleotide-binding protein compare
CSW01_09455 +0.3 2.5 hemolysin compare
CSW01_00940 +0.3 0.1 hypothetical protein compare
CSW01_16900 +0.3 0.9 twin-arginine translocase TatA/TatE family subunit compare
CSW01_17020 +0.3 2.0 hypothetical protein compare
CSW01_03510 +0.3 2.1 NADP(H)-dependent aldo-keto reductase compare
CSW01_06490 +0.3 2.1 6-phospho-beta-glucosidase compare
CSW01_05070 +0.3 2.4 N-acetylglucosamine-6-phosphate deacetylase compare
CSW01_05920 +0.3 2.3 dicarboxylate/amino acid:cation symporter compare


Specific Phenotypes

For 3 genes in this experiment

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids in Vibrio cholerae E7946 ATCC 55056

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms