Experiment set5IT093 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Vanillyl Alcohol 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -4.5 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3782 -4.4 -3.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5086 -4.1 -2.0 hypothetical protein compare
Pf6N2E2_3253 -3.4 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2317 -3.4 -4.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3251 -3.2 -9.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3134 -3.2 -1.5 hypothetical protein compare
Pf6N2E2_2274 -3.2 -5.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3839 -3.1 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3665 -3.0 -1.4 serine/threonine protein kinase compare
Pf6N2E2_2318 -2.9 -7.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5337 -2.8 -5.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3252 -2.7 -6.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3841 -2.7 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3610 -2.7 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3303 -2.7 -4.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3658 -2.6 -6.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3940 -2.6 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2201 -2.5 -4.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_3617 -2.4 -4.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3661 -2.4 -4.0 hypothetical protein compare
Pf6N2E2_4057 -2.4 -1.1 lipoprotein, putative compare
Pf6N2E2_2218 -2.4 -4.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5068 -2.4 -10.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3282 -2.3 -2.2 FIG005080: Possible exported protein compare
Pf6N2E2_5155 -2.3 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5339 -2.3 -6.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2574 -2.3 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_3783 -2.3 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5338 -2.2 -7.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4159 -2.2 -3.4 Cytochrome c4 compare
Pf6N2E2_5640 -2.2 -2.5 FIG00955597: hypothetical protein compare
Pf6N2E2_5523 -2.2 -4.3 Small-conductance mechanosensitive channel compare
Pf6N2E2_2311 -2.2 -6.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2869 -2.1 -1.6 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4153 -2.1 -1.4 Sensory box histidine kinase compare
Pf6N2E2_2967 -2.1 -2.2 Cold shock protein CspA compare
Pf6N2E2_2126 -2.0 -5.3 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_338 -2.0 -1.9 Transcriptional regulator, AraC family compare
Pf6N2E2_2640 -2.0 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4071 -2.0 -4.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5069 -1.9 -4.6 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3941 -1.9 -2.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2791 -1.9 -3.1 FIG00954883: hypothetical protein compare
Pf6N2E2_5245 -1.9 -5.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2313 -1.9 -3.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2384 -1.9 -3.5 CmpX compare
Pf6N2E2_3095 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_5242 -1.9 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2320 -1.9 -2.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_339 -1.9 -3.2 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_865 -1.9 -2.4 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5705 -1.8 -2.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2549 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_5950 -1.8 -3.2 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4773 -1.8 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3908 -1.8 -5.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2755 -1.8 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4369 -1.7 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2261 -1.7 -5.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_2121 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_828 -1.6 -4.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5321 -1.6 -6.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5647 -1.6 -4.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4416 -1.6 -2.2 Tyrosine recombinase XerC compare
Pf6N2E2_3300 -1.6 -3.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4691 -1.6 -2.1 hypothetical protein compare
Pf6N2E2_4928 -1.6 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_451 -1.6 -2.6 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5319 -1.6 -6.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5156 -1.6 -1.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2371 -1.6 -2.4 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_5342 -1.6 -2.4 21 kDa hemolysin precursor compare
Pf6N2E2_4993 -1.6 -2.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_4762 -1.6 -2.2 Biotin synthesis protein BioH compare
Pf6N2E2_1747 -1.6 -2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2425 -1.5 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5944 -1.5 -3.9 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_3786 -1.5 -2.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_4673 -1.5 -2.0 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_3260 -1.5 -3.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1162 -1.5 -1.6 Transmembrane amino acid efflux protein compare
Pf6N2E2_4585 -1.5 -8.1 Cell division protein FtsX compare
Pf6N2E2_3199 -1.4 -4.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_648 -1.4 -1.9 General secretion pathway protein K compare
Pf6N2E2_3198 -1.4 -1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3792 -1.4 -3.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3659 -1.4 -4.0 Protein fixF compare
Pf6N2E2_2127 -1.4 -3.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4996 -1.4 -2.7 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_4579 -1.4 -1.5 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5703 -1.4 -2.6 outer membrane protein H1 compare
Pf6N2E2_2552 -1.4 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2219 -1.4 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3258 -1.3 -2.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5178 -1.3 -1.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1128 -1.3 -2.2 Two-component response regulator compare
Pf6N2E2_4584 -1.3 -1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5544 -1.3 -4.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1445 -1.3 -2.2 Glutathione S-transferase compare
Pf6N2E2_2506 -1.3 -7.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_490 -1.3 -2.0 PhaK-like protein compare
Pf6N2E2_3257 -1.3 -2.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_170 -1.3 -1.8 lipoprotein, putative compare
Pf6N2E2_1652 -1.3 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3612 -1.3 -1.9 HflK protein compare
Pf6N2E2_4276 -1.3 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3171 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_2822 -1.3 -5.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2264 -1.3 -2.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2708 -1.2 -3.5 Lactam utilization protein LamB compare
Pf6N2E2_5328 -1.2 -3.1 FIG00958649: hypothetical protein compare
Pf6N2E2_2176 -1.2 -1.5 Amidases related to nicotinamidase compare
Pf6N2E2_1917 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_5320 -1.2 -4.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_1081 -1.2 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_2253 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_2503 -1.2 -1.6 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5527 -1.2 -1.7 Cold shock protein CspC compare
Pf6N2E2_2310 -1.2 -5.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_6063 -1.2 -4.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4075 -1.2 -3.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_552 -1.2 -1.5 Uncharacterized protein ImpF compare
Pf6N2E2_1404 -1.2 -2.0 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1656 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4160 -1.2 -0.9 Cytochrome c5 compare
Pf6N2E2_2514 -1.2 -3.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3834 -1.1 -4.2 Lipoprotein NlpD compare
Pf6N2E2_5103 -1.1 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2472 -1.1 -3.2 hypothetical protein compare
Pf6N2E2_5241 -1.1 -1.8 Aminopeptidase N compare
Pf6N2E2_5261 -1.1 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_75 -1.1 -2.6 Colicin V production protein compare
Pf6N2E2_4999 -1.1 -4.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3461 -1.1 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5316 -1.1 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1179 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_942 -1.1 -1.1 Mll6465 protein compare
Pf6N2E2_4987 -1.1 -0.9 MaoC-like domain protein compare
Pf6N2E2_5318 -1.1 -8.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3096 -1.1 -1.1 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_693 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_2527 -1.1 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4454 -1.1 -2.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2059 -1.1 -2.2 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3807 -1.1 -2.9 Histidine utilization repressor compare
Pf6N2E2_3634 -1.1 -1.4 Transporter compare
Pf6N2E2_4072 -1.1 -3.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2375 -1.1 -1.4 Response regulator NasT compare
Pf6N2E2_1694 -1.1 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5150 -1.1 -2.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4601 -1.1 -1.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_6057 -1.1 -1.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3607 -1.0 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4908 -1.0 -4.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2706 -1.0 -1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4499 -1.0 -1.4 protein of unknown function DUF86 compare
Pf6N2E2_4889 -1.0 -3.3 Putative transport protein compare
Pf6N2E2_5252 -1.0 -1.0 FIG00956396: hypothetical protein compare
Pf6N2E2_3791 -1.0 -4.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5610 -1.0 -3.5 two-component system sensor protein compare
Pf6N2E2_4084 -1.0 -3.9 Transcriptional regulator compare
Pf6N2E2_5292 -1.0 -3.4 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_1691 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_3534 -1.0 -1.5 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5331 -1.0 -3.5 ATPase, AFG1 family compare
Pf6N2E2_2189 -1.0 -2.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4921 -1.0 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_5392 -1.0 -1.8 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_5840 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_482 -1.0 -1.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_1896 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_5430 -1.0 -4.3 Transglycosylase, Slt family compare
Pf6N2E2_4364 -1.0 -1.2 Protein YicC compare
Pf6N2E2_2754 -1.0 -2.1 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1043 -1.0 -2.4 Transcriptional regulator, IclR family compare
Pf6N2E2_2447 -1.0 -3.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5291 -1.0 -7.1 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_547 -1.0 -2.8 Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68) compare
Pf6N2E2_5841 -1.0 -0.9 GlcG protein compare
Pf6N2E2_6022 -1.0 -1.8 StbE replicon stabilization toxin compare
Pf6N2E2_4187 -1.0 -2.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2055 -1.0 -2.1 StbE replicon stabilization toxin compare
Pf6N2E2_4541 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_3521 -1.0 -4.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_1732 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_407 -0.9 -2.6 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_2073 -0.9 -3.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1435 -0.9 -1.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_4638 -0.9 -1.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_302 -0.9 -2.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2278 -0.9 -6.5 Transcription-repair coupling factor compare
Pf6N2E2_3723 -0.9 -2.1 FIG022199: FAD-binding protein compare
Pf6N2E2_2258 -0.9 -4.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5727 -0.9 -3.6 FIG00955360: hypothetical protein compare
Pf6N2E2_1673 -0.9 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2088 -0.9 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_238 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3192 -0.9 -2.8 tRNA:Cm32/Um32 methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Vanillyl Alcohol across organisms