Experiment set5IT093 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Vanillyl Alcohol 0.005 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3027 +1.6 3.1 Baseplate assembly protein V compare
Pf6N2E2_204 +1.4 1.7 hypothetical protein compare
Pf6N2E2_6047 +1.4 2.8 hypothetical protein compare
Pf6N2E2_3875 +1.4 2.6 FIG00953324: hypothetical protein compare
Pf6N2E2_2003 +1.3 3.0 hypothetical protein compare
Pf6N2E2_4052 +1.2 2.0 FIG00955481: hypothetical protein compare
Pf6N2E2_4464 +1.1 2.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_1014 +1.1 1.6 Nitrate/nitrite transporter compare
Pf6N2E2_6045 +1.1 1.8 hypothetical protein compare
Pf6N2E2_4204 +1.1 1.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_237 +1.0 2.1 hypothetical protein compare
Pf6N2E2_2200 +1.0 1.7 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_2012 +1.0 2.7 hypothetical protein compare
Pf6N2E2_1083 +1.0 1.7 hypothetical protein compare
Pf6N2E2_264 +1.0 2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_344 +0.9 1.9 hypothetical protein compare
Pf6N2E2_2827 +0.9 1.7 hypothetical protein compare
Pf6N2E2_2518 +0.9 2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3725 +0.9 1.6 FIG085779: Lipoprotein compare
Pf6N2E2_1701 +0.9 1.9 ABC transporter ATP-binding protein compare
Pf6N2E2_4181 +0.9 1.3 Organic hydroperoxide resistance protein compare
Pf6N2E2_1758 +0.9 1.6 Transcriptional regulator, MarR family compare
Pf6N2E2_5534 +0.9 4.0 FIG000859: hypothetical protein YebC compare
Pf6N2E2_961 +0.9 1.8 FIG00954712: hypothetical protein compare
Pf6N2E2_5584 +0.8 1.7 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_4658 +0.8 2.8 FIG00955006: hypothetical protein compare
Pf6N2E2_2069 +0.8 2.2 FIG00953703: hypothetical protein compare
Pf6N2E2_5720 +0.8 5.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4415 +0.8 1.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_1434 +0.8 2.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2438 +0.8 1.3 hypothetical protein compare
Pf6N2E2_5757 +0.8 2.1 hypothetical protein compare
Pf6N2E2_1983 +0.8 2.0 hypothetical protein compare
Pf6N2E2_4414 +0.8 2.8 FIG00953808: hypothetical protein compare
Pf6N2E2_5341 +0.8 3.0 Stringent starvation protein B compare
Pf6N2E2_6164 +0.8 1.2 tRNA-Val-TAC compare
Pf6N2E2_4152 +0.8 4.5 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_799 +0.8 1.9 hypothetical protein compare
Pf6N2E2_5088 +0.8 1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4025 +0.8 0.8 hypothetical protein compare
Pf6N2E2_1028 +0.8 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_1821 +0.8 0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4150 +0.8 2.7 probable exported protein YPO0432 compare
Pf6N2E2_2795 +0.8 1.8 putative exported protein compare
Pf6N2E2_2296 +0.8 2.3 FIG00954767: hypothetical protein compare
Pf6N2E2_4162 +0.8 1.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3696 +0.8 1.0 hypothetical protein compare
Pf6N2E2_6070 +0.8 1.8 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_1141 +0.7 1.4 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_2195 +0.7 2.8 cI compare
Pf6N2E2_1688 +0.7 3.0 Permeases of the major facilitator superfamily compare
Pf6N2E2_1074 +0.7 1.8 FIG00953356: hypothetical protein compare
Pf6N2E2_1857 +0.7 2.7 hypothetical protein compare
Pf6N2E2_4534 +0.7 1.7 hypothetical protein compare
Pf6N2E2_647 +0.7 1.3 General secretion pathway protein G compare
Pf6N2E2_16 +0.7 1.1 hypothetical protein compare
Pf6N2E2_2223 +0.7 1.6 hypothetical protein compare
Pf6N2E2_4626 +0.7 3.6 Malonate transporter, MadL subunit compare
Pf6N2E2_733 +0.7 1.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_5943 +0.7 1.4 hypothetical protein compare
Pf6N2E2_1156 +0.7 1.2 hypothetical protein compare
Pf6N2E2_1981 +0.7 2.4 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4962 +0.7 2.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3224 +0.7 1.8 Lactoylglutathione lyase and related lyases compare
Pf6N2E2_3237 +0.7 1.4 hypothetical protein compare
Pf6N2E2_3716 +0.7 2.7 FIG143263: Glycosyl transferase compare
Pf6N2E2_6094 +0.6 3.5 Glucoamylase (EC 3.2.1.3) compare
Pf6N2E2_2824 +0.6 4.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4548 +0.6 1.2 hypothetical protein compare
Pf6N2E2_5919 +0.6 1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_813 +0.6 2.1 Response regulator compare
Pf6N2E2_1886 +0.6 0.9 hypothetical protein compare
Pf6N2E2_1476 +0.6 1.7 (AF179595) Vco33 compare
Pf6N2E2_6100 +0.6 1.1 tRNA-Val-TAC compare
Pf6N2E2_4306 +0.6 2.7 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_425 +0.6 1.7 FIG00957304: hypothetical protein compare
Pf6N2E2_2823 +0.6 2.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4298 +0.6 1.6 Uncharacterized protein ImpB compare
Pf6N2E2_1065 +0.6 1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5709 +0.6 3.0 Protein sprT compare
Pf6N2E2_2396 +0.6 1.9 Sensor histidine kinase compare
Pf6N2E2_4963 +0.6 1.5 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_796 +0.6 2.7 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_1775 +0.6 1.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2002 +0.6 1.7 hypothetical protein compare
Pf6N2E2_1603 +0.6 1.7 hypothetical protein compare
Pf6N2E2_1525 +0.6 1.7 Universal stress protein family 5 compare
Pf6N2E2_3871 +0.6 4.6 FIG00553872: hypothetical protein compare
Pf6N2E2_2591 +0.6 2.4 Flagellar assembly protein FliH compare
Pf6N2E2_750 +0.6 1.5 Transcriptional regulator, DeoR family compare
Pf6N2E2_2833 +0.6 2.6 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_2363 +0.6 1.9 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_1448 +0.6 1.5 hypothetical protein compare
Pf6N2E2_3151 +0.6 1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5830 +0.6 2.0 FIG00960829: hypothetical protein compare
Pf6N2E2_20 +0.6 1.5 pyoverdine-specific efflux macA-like protein compare
Pf6N2E2_2022 +0.6 2.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_434 +0.6 1.2 hypothetical protein compare
Pf6N2E2_1152 +0.6 1.7 hypothetical protein compare
Pf6N2E2_1325 +0.6 2.0 FIG00954773: hypothetical protein compare
Pf6N2E2_6031 +0.6 1.8 hypothetical protein compare
Pf6N2E2_2467 +0.6 1.8 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_464 +0.6 1.0 Sensory histidine kinase QseC compare
Pf6N2E2_2979 +0.6 2.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_478 +0.5 1.8 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_3969 +0.5 0.7 Membrane-fusion protein compare
Pf6N2E2_146 +0.5 1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_987 +0.5 1.0 hypothetical protein compare
Pf6N2E2_447 +0.5 2.4 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2894 +0.5 1.8 N-acylglucosamine 2-epimerase (EC 5.1.3.8) compare
Pf6N2E2_1885 +0.5 0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_2406 +0.5 3.0 Periplasmic binding protein compare
Pf6N2E2_706 +0.5 2.9 Nitric oxide reductase activation protein NorQ compare
Pf6N2E2_3240 +0.5 0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5210 +0.5 1.8 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) compare
Pf6N2E2_4313 +0.5 2.7 hypothetical protein compare
Pf6N2E2_2128 +0.5 1.7 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5714 +0.5 1.3 Flavoprotein WrbA compare
Pf6N2E2_2769 +0.5 2.1 Tricarboxylate transport protein TctB compare
Pf6N2E2_5704 +0.5 2.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_851 +0.5 2.0 Osmotically inducible protein Y precursor compare
Pf6N2E2_322 +0.5 1.8 Transcriptional regulator, LacI family compare
Pf6N2E2_483 +0.5 2.2 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf6N2E2_698 +0.5 1.3 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_1307 +0.5 2.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Pf6N2E2_3738 +0.5 0.9 General secretion pathway protein L compare
Pf6N2E2_241 +0.5 0.7 hypothetical protein compare
Pf6N2E2_2324 +0.5 1.5 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4508 +0.5 1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_89 +0.5 0.7 hypothetical protein compare
Pf6N2E2_420 +0.5 0.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_127 +0.5 0.5 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_493 +0.5 1.8 YD repeat protein compare
Pf6N2E2_2701 +0.5 2.0 FIG00954689: hypothetical protein compare
Pf6N2E2_2477 +0.5 0.8 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_4418 +0.5 0.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4066 +0.5 2.4 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_5406 +0.5 1.3 FIG00958224: hypothetical protein compare
Pf6N2E2_1086 +0.5 1.8 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching compare
Pf6N2E2_1176 +0.5 1.2 Mll2356 protein compare
Pf6N2E2_3183 +0.5 0.8 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_5825 +0.5 1.4 FIG00958237: hypothetical protein compare
Pf6N2E2_3611 +0.5 0.4 HflC protein compare
Pf6N2E2_2054 +0.5 1.6 hypothetical protein compare
Pf6N2E2_5819 +0.5 2.0 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf6N2E2_988 +0.5 1.4 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_4485 +0.5 3.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_2225 +0.5 1.4 FIG00953489: hypothetical protein compare
Pf6N2E2_1618 +0.5 2.3 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain compare
Pf6N2E2_3849 +0.5 1.0 FIG00954739: hypothetical protein compare
Pf6N2E2_5444 +0.5 1.7 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_1111 +0.5 2.0 cell wall degradation protein compare
Pf6N2E2_1330 +0.5 1.6 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Pf6N2E2_2267 +0.5 1.3 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_5024 +0.5 1.5 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_3835 +0.5 1.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5078 +0.5 1.3 Carbon starvation protein A compare
Pf6N2E2_3984 +0.5 3.2 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5595 +0.5 2.0 Electron transport complex protein RnfE compare
Pf6N2E2_5272 +0.5 1.9 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_5773 +0.5 1.8 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_1199 +0.5 1.5 hypothetical protein compare
Pf6N2E2_4307 +0.5 1.5 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3339 +0.5 2.5 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Pf6N2E2_1631 +0.5 1.7 SyrP-like protein compare
Pf6N2E2_309 +0.5 0.4 FIG00957702: hypothetical protein compare
Pf6N2E2_5243 +0.5 0.9 hypothetical protein compare
Pf6N2E2_5603 +0.5 2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_474 +0.5 1.6 Transcriptional regulator, ArsR family compare
Pf6N2E2_1394 +0.5 1.5 FIG00953323: hypothetical protein compare
Pf6N2E2_2881 +0.5 1.2 Putative cytoplasmic protein compare
Pf6N2E2_1326 +0.5 1.8 Cationic amino acid transporter compare
Pf6N2E2_5487 +0.5 1.2 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2444 +0.5 1.8 Glutathione peroxidase family protein compare
Pf6N2E2_1806 +0.5 0.9 hypothetical protein compare
Pf6N2E2_1320 +0.5 1.3 Putative response regulator compare
Pf6N2E2_5768 +0.5 1.6 DNA recombination-dependent growth factor C compare
Pf6N2E2_3973 +0.5 1.9 hypothetical protein compare
Pf6N2E2_5874 +0.5 3.8 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf6N2E2_5623 +0.5 1.1 YciL protein compare
Pf6N2E2_2879 +0.5 1.8 membrane protein, putative compare
Pf6N2E2_1462 +0.5 1.5 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_1998 +0.5 1.9 FIG01212208: hypothetical protein compare
Pf6N2E2_5677 +0.5 0.6 Carbon storage regulator compare
Pf6N2E2_1501 +0.5 1.0 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_4594 +0.5 1.0 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_3726 +0.5 1.9 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_1759 +0.4 1.1 uncharacterized domain 1 compare
Pf6N2E2_553 +0.4 1.7 Uncharacterized protein ImpD compare
Pf6N2E2_4710 +0.4 1.1 hypothetical protein compare
Pf6N2E2_1438 +0.4 1.1 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4050 +0.4 1.2 FIG00953718: hypothetical protein compare
Pf6N2E2_3498 +0.4 1.2 FIG00953349: hypothetical protein compare
Pf6N2E2_2074 +0.4 0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_967 +0.4 1.3 DNA repair protein RadC compare
Pf6N2E2_1044 +0.4 1.0 hypothetical protein compare
Pf6N2E2_2178 +0.4 2.3 FIG00960144: hypothetical protein compare
Pf6N2E2_62 +0.4 1.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_15 +0.4 1.7 Pyoverdine biosynthesis related protein PvdP compare
Pf6N2E2_5014 +0.4 0.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Vanillyl Alcohol across organisms