Experiment set5IT093 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_18HR_ZN20B

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -3.3 -7.2 thiamine-phosphate kinase compare
CSW01_13305 -2.7 -2.5 shikimate kinase compare
CSW01_01300 -2.6 -4.6 sugar ABC transporter compare
CSW01_07190 -2.5 -9.3 transcriptional regulator FNR compare
CSW01_03795 -2.5 -1.7 phosphate ABC transporter ATP-binding protein compare
CSW01_09365 -2.4 -8.5 pyruvate formate lyase 1-activating protein compare
CSW01_02890 -2.4 -12.1 aspartate kinase compare
CSW01_13420 -2.1 -3.6 elongation factor P--(R)-beta-lysine ligase compare
CSW01_09350 -2.0 -14.3 formate C-acetyltransferase compare
CSW01_12815 -1.9 -9.4 RNA polymerase sigma-54 factor compare
CSW01_03950 -1.9 -4.3 hypothetical protein compare
CSW01_08240 -1.8 -3.4 ATP-binding protein compare
CSW01_05575 -1.8 -3.9 phosphate acetyltransferase compare
CSW01_03785 -1.7 -3.1 phosphate ABC transporter permease compare
CSW01_03410 -1.7 -2.7 polyribonucleotide nucleotidyltransferase compare
CSW01_13670 -1.6 -3.9 DNA-directed RNA polymerase subunit omega compare
CSW01_10190 -1.6 -6.3 nucleoid-associated protein compare
CSW01_11690 -1.5 -9.8 hypothetical protein compare
CSW01_12365 -1.5 -2.7 inorganic phosphate transporter compare
CSW01_04930 -1.4 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_16310 -1.4 -2.4 DUF3709 domain-containing protein compare
CSW01_04820 -1.4 -8.6 serine hydroxymethyltransferase compare
CSW01_09245 -1.3 -4.6 Holliday junction branch migration protein RuvA compare
CSW01_13805 -1.3 -3.2 Hsp33 family molecular chaperone HslO compare
CSW01_14680 -1.3 -2.0 aminotransferase compare
CSW01_14325 -1.3 -5.8 peptidase compare
CSW01_04375 -1.3 -3.5 SsrA-binding protein compare
CSW01_11705 -1.2 -7.8 MFS transporter compare
CSW01_03985 -1.2 -3.2 GMP synthase (glutamine-hydrolyzing) compare
CSW01_09620 -1.2 -2.2 trigger factor compare
CSW01_04850 -1.2 -4.4 septal ring lytic transglycosylase RlpA compare
CSW01_08620 -1.2 -8.1 chromosome partition protein MukB compare
CSW01_12250 -1.1 -5.2 site-specific tyrosine recombinase XerD compare
CSW01_18350 -1.1 -1.1 cell division protein DedD compare
CSW01_09525 -1.1 -0.9 DNA translocase FtsK compare
CSW01_03415 -1.1 -5.0 lipoprotein NlpI compare
CSW01_01295 -1.1 -1.6 ABC transporter permease compare
CSW01_00560 -1.1 -2.4 DNA polymerase I compare
CSW01_04845 -1.1 -5.0 D-alanyl-D-alanine carboxypeptidase compare
CSW01_10750 -1.1 -3.8 outer membrane protein assembly factor BamC compare
CSW01_03790 -1.1 -2.8 phosphate ABC transporter, permease protein PstA compare
CSW01_10485 -1.1 -1.6 DUF2788 domain-containing protein compare
CSW01_04660 -1.1 -8.0 PTS trehalose transporter subunit IIBC compare
CSW01_10875 -1.0 -3.2 redox-regulated ATPase YchF compare
CSW01_02755 -1.0 -1.3 glutamyl-tRNA amidotransferase compare
CSW01_12875 -1.0 -7.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
CSW01_03330 -1.0 -3.3 transcription elongation factor GreA compare
CSW01_00650 -1.0 -5.4 tyrosine recombinase XerC compare
CSW01_01845 -1.0 -6.5 protease modulator HflK compare
CSW01_08625 -1.0 -4.5 chromosome partition protein MukE compare
CSW01_10390 -1.0 -2.9 ferrous iron transport protein A compare
CSW01_00495 -1.0 -1.3 SOS-response transcriptional repressor compare
CSW01_12260 -1.0 -3.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
CSW01_12320 -1.0 -1.7 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_01445 -1.0 -8.3 lysine decarboxylase compare
CSW01_13285 -1.0 -2.1 ribulose-phosphate 3-epimerase compare
CSW01_05580 -1.0 -4.5 acetate kinase compare
CSW01_17855 -0.9 -6.6 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_16950 -0.9 -4.7 ATP-dependent endonuclease compare
CSW01_03155 -0.9 -5.9 RNA polymerase-binding transcription factor DksA compare
CSW01_04650 -0.9 -1.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_05195 -0.9 -3.7 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_01440 -0.9 -7.5 lysine:cadaverine antiporter compare
CSW01_01435 -0.9 -7.4 transcriptional regulator CadC compare
CSW01_10385 -0.9 -5.8 Fe(2+) transporter permease subunit FeoB compare
CSW01_01850 -0.9 -4.6 protease modulator HflC compare
CSW01_08630 -0.9 -4.1 condensin subunit F compare
CSW01_09240 -0.9 -3.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_11730 -0.9 -1.8 2-dehydropantoate 2-reductase compare
CSW01_02500 -0.9 -5.2 deoxyribonuclease compare
CSW01_13505 -0.8 -5.3 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
CSW01_00095 -0.8 -2.1 hypothetical protein compare
CSW01_10165 -0.8 -6.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_14910 -0.8 -2.0 cold-shock protein compare
CSW01_01015 -0.8 -5.9 DNA helicase II compare
CSW01_01515 -0.8 -1.7 type II 3-dehydroquinate dehydratase compare
CSW01_02875 -0.8 -4.2 DNA recombination/repair protein RecA compare
CSW01_13300 -0.8 -4.1 3-dehydroquinate synthase compare
CSW01_03055 -0.8 -2.4 cytochrome c1 compare
CSW01_07145 -0.8 -3.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_14100 -0.8 -2.4 hypothetical protein compare
CSW01_17525 -0.8 -1.4 hypothetical protein compare
CSW01_05340 -0.7 -5.5 LysR family transcriptional regulator compare
CSW01_04390 -0.7 -2.0 outer membrane protein assembly factor BamE compare
CSW01_03870 -0.7 -0.7 inositol monophosphatase compare
CSW01_00015 -0.7 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_03475 -0.7 -2.9 ATP-dependent RNA helicase SrmB compare
CSW01_18420 -0.7 -2.0 hypothetical protein compare
CSW01_03975 -0.7 -3.2 exodeoxyribonuclease VII large subunit compare
CSW01_16325 -0.7 -1.4 hypothetical protein compare
CSW01_15870 -0.7 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_11115 -0.7 -2.6 hypothetical protein compare
CSW01_09515 -0.7 -5.4 Na+/H+ antiporter NhaB compare
CSW01_01965 -0.7 -0.7 glucose-6-phosphate isomerase compare
CSW01_10565 -0.7 -1.9 hypothetical protein compare
CSW01_16040 -0.7 -3.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_17090 -0.7 -3.5 SPOR domain-containing protein compare
CSW01_13155 -0.7 -5.6 ribonuclease R compare
CSW01_09955 -0.7 -4.0 L-asparaginase 1 compare
CSW01_04585 -0.7 -3.3 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_00450 -0.7 -1.2 SCP2 domain-containing protein compare
CSW01_05480 -0.7 -2.4 hypothetical protein compare
CSW01_02450 -0.7 -4.0 pyrroline-5-carboxylate reductase compare
CSW01_07460 -0.6 -1.2 ribosome modulation factor compare
CSW01_14810 -0.6 -2.8 tryptophanase leader peptide compare
CSW01_10560 -0.6 -2.1 chorismate synthase compare
CSW01_17780 -0.6 -1.7 hypothetical protein compare
CSW01_08395 -0.6 -3.3 cardiolipin synthase compare
CSW01_03075 -0.6 -2.1 phosphoheptose isomerase compare
CSW01_16800 -0.6 -3.2 anaerobic ribonucleoside-triphosphate reductase compare
CSW01_01110 -0.6 -4.4 YicC family protein compare
CSW01_00280 -0.6 -3.9 shikimate dehydrogenase compare
CSW01_13430 -0.6 -4.6 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
CSW01_01265 -0.6 -1.7 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_12405 -0.6 -4.9 GTP diphosphokinase compare
CSW01_01490 -0.6 -1.0 Fis family transcriptional regulator compare
CSW01_05165 -0.6 -1.2 electron transport complex subunit RsxC compare
CSW01_00540 -0.6 -1.0 hypothetical protein compare
CSW01_12480 -0.6 -1.0 sigma-E factor negative regulatory protein RseA compare
CSW01_05125 -0.5 -1.5 ribonuclease T compare
CSW01_17385 -0.5 -1.1 antibiotic biosynthesis monooxygenase compare
CSW01_13435 -0.5 -3.3 fumarate reductase subunit C compare
CSW01_16470 -0.5 -1.4 DUF645 domain-containing protein compare
CSW01_05280 -0.5 -3.4 uridine kinase compare
CSW01_08435 -0.5 -1.8 phage shock protein PspA compare
CSW01_05825 -0.5 -2.2 transcriptional regulator HexR compare
CSW01_04940 -0.5 -0.8 hypothetical protein compare
CSW01_17530 -0.5 -3.0 anaerobic C4-dicarboxylate transporter DcuC compare
CSW01_14125 -0.5 -2.6 1,4-alpha-glucan branching enzyme compare
CSW01_10075 -0.5 -3.1 endolytic transglycosylase MltG compare
CSW01_13425 -0.5 -4.5 fumarate reductase (quinol) flavoprotein subunit compare
CSW01_06405 -0.5 -3.1 murein L,D-transpeptidase compare
CSW01_11415 -0.5 -2.0 phenolic acid decarboxylase compare
CSW01_04910 -0.5 -1.3 PhoH family protein compare
CSW01_06280 -0.5 -2.5 succinylglutamate desuccinylase compare
CSW01_09110 -0.5 -1.8 DNA-binding protein VF530 compare
CSW01_18365 -0.5 -2.5 LysE family translocator compare
CSW01_07195 -0.5 -1.2 cytochrome biogenesis protein compare
CSW01_05075 -0.5 -4.1 PTS N-acetylmuramic acid transporter subunit IIBC compare
CSW01_13565 -0.5 -2.1 cell division protein ZapB compare
CSW01_03025 -0.5 -1.9 hypothetical protein compare
CSW01_16785 -0.5 -1.6 hypothetical protein compare
CSW01_18250 -0.5 -2.0 co-chaperone GroES compare
CSW01_05240 -0.5 -2.0 CBS domain-containing protein compare
CSW01_07200 -0.5 -1.0 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_00215 -0.5 -3.4 potassium uptake protein TrkH compare
CSW01_14130 -0.5 -0.9 hypothetical protein compare
CSW01_00465 -0.5 -1.8 twin-arginine translocase subunit TatB compare
CSW01_04195 -0.5 -2.8 class I SAM-dependent methyltransferase compare
CSW01_08980 -0.5 -0.9 hypothetical protein compare
CSW01_09420 -0.5 -1.0 DUF2062 domain-containing protein compare
CSW01_16660 -0.5 -2.0 hypothetical protein compare
CSW01_13620 -0.5 -3.9 aspartate ammonia-lyase compare
CSW01_11915 -0.5 -1.6 hypothetical protein compare
CSW01_19095 -0.5 -2.0 DUF445 domain-containing protein compare
CSW01_11565 -0.5 -0.8 transcriptional regulator NrdR compare
CSW01_00570 -0.5 -1.8 cytochrome c4 compare
CSW01_11080 -0.5 -2.7 transcriptional regulator compare
CSW01_06435 -0.5 -2.3 C4-dicarboxylate ABC transporter compare
CSW01_12130 -0.5 -2.0 DUF721 domain-containing protein compare
CSW01_01385 -0.5 -2.8 DUF416 domain-containing protein compare
CSW01_16575 -0.5 -1.4 acetyltransferase compare
CSW01_06005 -0.4 -2.7 vancomycin high temperature exclusion protein compare
CSW01_14235 -0.4 -1.7 copper chaperone PCu(A)C compare
CSW01_08665 -0.4 -1.3 DNA transformation protein compare
CSW01_06315 -0.4 -1.9 DUF3943 domain-containing protein compare
CSW01_05800 -0.4 -1.5 ATP-dependent Clp protease adaptor ClpS compare
CSW01_05430 -0.4 -3.1 GGDEF domain-containing protein compare
CSW01_05370 -0.4 -1.0 YbaB/EbfC family nucleoid-associated protein compare
CSW01_17665 -0.4 -1.8 hypothetical protein compare
CSW01_15005 -0.4 -1.7 HNH endonuclease compare
CSW01_09070 -0.4 -2.5 transposase compare
CSW01_12920 -0.4 -1.5 DUF2607 domain-containing protein compare
CSW01_15810 -0.4 -0.7 hypothetical protein compare
CSW01_11020 -0.4 -1.7 molecular chaperone DnaK compare
CSW01_18435 -0.4 -1.3 hypothetical protein compare
CSW01_05490 -0.4 -2.3 L-threonylcarbamoyladenylate synthase compare
CSW01_01800 -0.4 -0.7 tRNA-Met compare
CSW01_16730 -0.4 -1.3 glutathione S-transferase compare
CSW01_14080 -0.4 -0.5 DUF3283 domain-containing protein compare
CSW01_14055 -0.4 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_03065 -0.4 -0.9 ClpXP protease specificity-enhancing factor compare
CSW01_05020 -0.4 -1.3 regulatory protein ToxS compare
CSW01_12005 -0.4 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_10460 -0.4 -1.7 Nif3-like dinuclear metal center hexameric protein compare
CSW01_19275 -0.4 -2.3 amino acid ABC transporter ATP-binding protein compare
CSW01_16590 -0.4 -0.7 N-acetyltransferase compare
CSW01_04445 -0.4 -1.1 hypothetical protein compare
CSW01_11105 -0.4 -2.0 hypothetical protein compare
CSW01_08450 -0.4 -0.9 antimicrobial peptide ABC transporter permease SapB compare
CSW01_05025 -0.4 -2.3 transcriptional regulator compare
CSW01_11440 -0.4 -2.6 ribonuclease HII compare
CSW01_04935 -0.4 -0.6 phosphocarrier protein HPr compare
CSW01_11755 -0.4 -2.7 murein transglycosylase compare
CSW01_18775 -0.4 -1.4 hypothetical protein compare
CSW01_08730 -0.4 -1.1 phage-shock protein compare
CSW01_07965 -0.4 -1.6 LysR family transcriptional regulator compare
CSW01_19600 -0.4 -1.8 hypothetical protein compare
CSW01_02690 -0.4 -1.5 DUF2787 domain-containing protein compare
CSW01_13410 -0.4 -1.7 protein-export protein SecB compare


Specific Phenotypes

For 3 genes in this experiment

For lb_anaerobic LB in Vibrio cholerae E7946 ATCC 55056

For lb_anaerobic LB across organisms