Experiment set5IT092 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Anaerobic_18HR_ZN20A

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.9 -5.7 outer membrane protein TolC compare
CSW01_09245 -4.7 -3.2 Holliday junction branch migration protein RuvA compare
CSW01_02890 -4.6 -6.3 aspartate kinase compare
CSW01_12250 -4.4 -4.2 site-specific tyrosine recombinase XerD compare
CSW01_01015 -4.2 -6.4 DNA helicase II compare
CSW01_11535 -4.1 -4.9 thiamine-phosphate kinase compare
CSW01_00650 -4.1 -4.8 tyrosine recombinase XerC compare
CSW01_04650 -4.0 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_09240 -3.9 -2.7 Holliday junction branch migration DNA helicase RuvB compare
CSW01_10340 -3.8 -5.1 MinD/ParA family protein compare
CSW01_02875 -3.5 -8.0 DNA recombination/repair protein RecA compare
CSW01_01300 -3.4 -2.3 sugar ABC transporter compare
CSW01_05630 -3.3 -16.7 replication-associated recombination protein A compare
CSW01_03790 -3.3 -3.8 phosphate ABC transporter, permease protein PstA compare
CSW01_04845 -3.1 -8.2 D-alanyl-D-alanine carboxypeptidase compare
CSW01_01125 -2.9 -12.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_03785 -2.9 -2.0 phosphate ABC transporter permease compare
CSW01_11255 -2.8 -8.1 flagellar biosynthesis protein FlgP compare
CSW01_13420 -2.8 -3.2 elongation factor P--(R)-beta-lysine ligase compare
CSW01_03795 -2.5 -1.6 phosphate ABC transporter ATP-binding protein compare
CSW01_01295 -2.1 -1.4 ABC transporter permease compare
CSW01_08450 -2.0 -3.6 antimicrobial peptide ABC transporter permease SapB compare
CSW01_03325 -2.0 -1.4 porin compare
CSW01_05575 -2.0 -4.5 phosphate acetyltransferase compare
CSW01_02755 -1.9 -2.7 glutamyl-tRNA amidotransferase compare
CSW01_02020 -1.8 -2.2 phosphoadenosine phosphosulfate reductase compare
CSW01_11565 -1.8 -3.7 transcriptional regulator NrdR compare
CSW01_10190 -1.8 -5.4 nucleoid-associated protein compare
CSW01_02830 -1.8 -7.2 murein hydrolase activator NlpD compare
CSW01_11775 -1.7 -9.7 exodeoxyribonuclease V subunit alpha compare
CSW01_08620 -1.7 -11.3 chromosome partition protein MukB compare
CSW01_08630 -1.7 -7.2 condensin subunit F compare
CSW01_10440 -1.7 -4.1 succinate dehydrogenase flavoprotein subunit compare
CSW01_04570 -1.6 -4.5 exodeoxyribonuclease 7 small subunit compare
CSW01_03985 -1.6 -3.4 GMP synthase (glutamine-hydrolyzing) compare
CSW01_15120 -1.6 -6.0 iron(III) ABC transporter permease compare
CSW01_09250 -1.6 -1.1 crossover junction endodeoxyribonuclease RuvC compare
CSW01_08625 -1.6 -4.5 chromosome partition protein MukE compare
CSW01_03410 -1.6 -2.6 polyribonucleotide nucleotidyltransferase compare
CSW01_09525 -1.6 -1.0 DNA translocase FtsK compare
CSW01_08240 -1.6 -3.5 ATP-binding protein compare
CSW01_04935 -1.5 -1.6 phosphocarrier protein HPr compare
CSW01_11670 -1.5 -1.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_03870 -1.5 -1.6 inositol monophosphatase compare
CSW01_13305 -1.4 -2.0 shikimate kinase compare
CSW01_04375 -1.4 -3.1 SsrA-binding protein compare
CSW01_18760 -1.4 -7.7 dihydroorotase compare
CSW01_18350 -1.3 -1.3 cell division protein DedD compare
CSW01_05855 -1.3 -7.1 hypothetical protein compare
CSW01_13680 -1.3 -10.3 DNA helicase RecG compare
CSW01_02015 -1.2 -5.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
CSW01_03975 -1.2 -5.6 exodeoxyribonuclease VII large subunit compare
CSW01_10750 -1.2 -2.9 outer membrane protein assembly factor BamC compare
CSW01_01245 -1.2 -3.1 lipopolysaccharide heptosyltransferase II compare
CSW01_01265 -1.2 -1.9 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_12365 -1.2 -2.4 inorganic phosphate transporter compare
CSW01_12770 -1.1 -4.7 ABC transporter permease compare
CSW01_12320 -1.1 -1.6 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_00560 -1.1 -0.8 DNA polymerase I compare
CSW01_14055 -1.1 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_10455 -1.1 -4.5 citrate synthase compare
CSW01_01190 -1.1 -3.9 glycosyltransferase family 2 protein compare
CSW01_14910 -1.1 -2.1 cold-shock protein compare
CSW01_13805 -1.1 -2.7 Hsp33 family molecular chaperone HslO compare
CSW01_01120 -1.1 -8.9 orotate phosphoribosyltransferase compare
CSW01_11690 -1.1 -6.2 hypothetical protein compare
CSW01_15870 -1.1 -2.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_06315 -1.1 -5.0 DUF3943 domain-containing protein compare
CSW01_04850 -1.1 -5.5 septal ring lytic transglycosylase RlpA compare
CSW01_03950 -1.1 -2.7 hypothetical protein compare
CSW01_02270 -1.0 -4.5 malate dehydrogenase compare
CSW01_07210 -1.0 -3.1 hypothetical protein compare
CSW01_14085 -1.0 -2.1 transcriptional regulator compare
CSW01_15115 -1.0 -5.5 iron(III) ABC transporter permease compare
CSW01_05370 -1.0 -1.6 YbaB/EbfC family nucleoid-associated protein compare
CSW01_06015 -1.0 -5.8 NAD-dependent malic enzyme compare
CSW01_10710 -1.0 -6.6 deferrochelatase compare
CSW01_15110 -1.0 -4.9 iron(III) ABC transporter substrate-binding protein compare
CSW01_12480 -1.0 -1.6 sigma-E factor negative regulatory protein RseA compare
CSW01_09605 -1.0 -3.8 endopeptidase La compare
CSW01_04390 -1.0 -1.9 outer membrane protein assembly factor BamE compare
CSW01_06585 -0.9 -2.4 fumarate hydratase compare
CSW01_17090 -0.9 -5.5 SPOR domain-containing protein compare
CSW01_10445 -0.9 -2.4 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_00095 -0.9 -2.2 hypothetical protein compare
CSW01_09560 -0.9 -3.8 orotidine-5'-phosphate decarboxylase compare
CSW01_15125 -0.9 -4.3 iron(III) ABC transporter ATP-binding protein compare
CSW01_11870 -0.9 -5.8 DNA repair protein RadA compare
CSW01_11115 -0.9 -2.3 hypothetical protein compare
CSW01_00065 -0.9 -5.2 DNA replication and repair protein RecF compare
CSW01_01530 -0.9 -6.2 cyclic nucleotide-binding protein compare
CSW01_07490 -0.9 -3.7 dihydroorotate dehydrogenase (quinone) compare
CSW01_12100 -0.9 -7.3 carbamoyl-phosphate synthase large chain compare
CSW01_12105 -0.9 -5.7 carbamoyl-phosphate synthase small subunit compare
CSW01_07760 -0.9 -3.5 energy transducer TonB compare
CSW01_12815 -0.9 -4.9 RNA polymerase sigma-54 factor compare
CSW01_13300 -0.8 -4.0 3-dehydroquinate synthase compare
CSW01_09720 -0.8 -0.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_07230 -0.8 -4.3 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_01185 -0.8 -4.4 ADP-heptose--LPS heptosyltransferase compare
CSW01_13635 -0.8 -5.6 thiol:disulfide interchange protein DsbD compare
CSW01_05265 -0.8 -1.1 methionine--tRNA ligase compare
CSW01_01240 -0.8 -5.4 lipopolysaccharide biosynthesis protein compare
CSW01_17525 -0.8 -1.5 hypothetical protein compare
CSW01_07145 -0.8 -2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_10245 -0.8 -3.1 ABC transporter compare
CSW01_18705 -0.8 -3.8 biopolymer transporter exbD1 compare
CSW01_08465 -0.8 -1.5 ABC transporter ATP-binding protein compare
CSW01_17780 -0.7 -1.7 hypothetical protein compare
CSW01_18525 -0.7 -2.0 integrase compare
CSW01_14680 -0.7 -1.3 aminotransferase compare
CSW01_05195 -0.7 -3.1 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_05580 -0.7 -3.3 acetate kinase compare
CSW01_14495 -0.7 -2.4 NUDIX hydrolase compare
CSW01_10875 -0.7 -2.3 redox-regulated ATPase YchF compare
CSW01_13445 -0.7 -0.8 elongation factor P compare
CSW01_17495 -0.7 -4.2 glycerol-3-phosphate dehydrogenase compare
CSW01_11260 -0.7 -2.0 hypothetical protein compare
CSW01_12725 -0.7 -4.5 aspartate carbamoyltransferase compare
CSW01_07775 -0.7 -4.3 flagellar motor protein MotA compare
CSW01_15335 -0.7 -2.8 glycine cleavage system protein H compare
CSW01_12950 -0.7 -3.2 adenylyl-sulfate kinase compare
CSW01_02085 -0.7 -4.4 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_02490 -0.7 -3.4 glutathione synthetase compare
CSW01_00540 -0.7 -1.4 hypothetical protein compare
CSW01_11730 -0.7 -1.5 2-dehydropantoate 2-reductase compare
CSW01_11215 -0.7 -2.9 flagellar hook assembly protein FlgD compare
CSW01_05025 -0.7 -3.9 transcriptional regulator compare
CSW01_01350 -0.7 -5.9 polysaccharide biosynthesis protein compare
CSW01_14100 -0.7 -2.5 hypothetical protein compare
CSW01_18630 -0.7 -3.4 6-phosphogluconolactonase compare
CSW01_05890 -0.7 -4.1 hypothetical protein compare
CSW01_11780 -0.7 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_16785 -0.7 -3.0 hypothetical protein compare
CSW01_02010 -0.7 -3.5 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
CSW01_11785 -0.6 -0.7 exonuclease V subunit gamma compare
CSW01_10565 -0.6 -1.3 hypothetical protein compare
CSW01_13560 -0.6 -4.1 methylenetetrahydrofolate reductase compare
CSW01_05800 -0.6 -1.8 ATP-dependent Clp protease adaptor ClpS compare
CSW01_14125 -0.6 -3.0 1,4-alpha-glucan branching enzyme compare
CSW01_15310 -0.6 -1.3 exoribonuclease R compare
CSW01_03980 -0.6 -3.9 IMP dehydrogenase compare
CSW01_04195 -0.6 -2.9 class I SAM-dependent methyltransferase compare
CSW01_06530 -0.6 -4.5 aromatic amino acid aminotransferase compare
CSW01_11755 -0.6 -3.3 murein transglycosylase compare
CSW01_12885 -0.6 -4.3 fructose 1,6-bisphosphatase compare
CSW01_07770 -0.6 -2.3 MotA/TolQ/ExbB proton channel family protein compare
CSW01_10260 -0.6 -2.3 thiol:disulfide interchange protein DsbE compare
CSW01_07160 -0.6 -2.8 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_05125 -0.6 -1.7 ribonuclease T compare
CSW01_06025 -0.6 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_11415 -0.6 -2.9 phenolic acid decarboxylase compare
CSW01_02255 -0.6 -4.1 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_12875 -0.6 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
CSW01_12765 -0.6 -3.2 outer membrane lipid asymmetry maintenance protein MlaD compare
CSW01_02315 -0.6 -3.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_00850 -0.6 -5.1 multidrug resistance protein compare
CSW01_13410 -0.6 -2.3 protein-export protein SecB compare
CSW01_13960 -0.6 -4.7 potassium uptake protein TrkH compare
CSW01_19415 -0.6 -2.2 hypothetical protein compare
CSW01_12665 -0.6 -2.3 RDD family protein compare
CSW01_03055 -0.6 -1.6 cytochrome c1 compare
CSW01_12240 -0.6 -4.5 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_09315 -0.6 -2.3 exodeoxyribonuclease III compare
CSW01_05375 -0.6 -2.9 recombination protein RecR compare
CSW01_09620 -0.6 -1.1 trigger factor compare
CSW01_00260 -0.6 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
CSW01_12260 -0.6 -2.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
CSW01_10355 -0.6 -2.5 phosphohistidine phosphatase SixA compare
CSW01_07225 -0.6 -2.0 cytochrome-c oxidase, cbb3-type subunit II compare
CSW01_14235 -0.6 -2.1 copper chaperone PCu(A)C compare
CSW01_04585 -0.6 -2.7 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_07195 -0.5 -1.3 cytochrome biogenesis protein compare
CSW01_05020 -0.5 -1.5 regulatory protein ToxS compare
CSW01_10130 -0.5 -3.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_02825 -0.5 -3.0 protein-L-isoaspartate O-methyltransferase compare
CSW01_03475 -0.5 -1.7 ATP-dependent RNA helicase SrmB compare
CSW01_01045 -0.5 -4.4 DNA helicase RecQ compare
CSW01_00855 -0.5 -3.7 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_15430 -0.5 -1.3 hypothetical protein compare
CSW01_11120 -0.5 -1.4 hypothetical protein compare
CSW01_11220 -0.5 -1.4 flagellar basal body rod protein FlgC compare
CSW01_01360 -0.5 -2.1 sugar transferase compare
CSW01_07920 -0.5 -1.5 lipid A modification system glycine carrier protein AlmF compare
CSW01_12445 -0.5 -2.9 DNA repair protein RecO compare
CSW01_09445 -0.5 -4.5 transcription-repair coupling factor compare
CSW01_07155 -0.5 -1.4 spermidine/putrescine ABC transporter permease PotB compare
CSW01_17855 -0.5 -3.7 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_15005 -0.5 -2.4 HNH endonuclease compare
CSW01_09185 -0.5 -2.5 tol-pal system protein YbgF compare
CSW01_12130 -0.5 -2.0 DUF721 domain-containing protein compare
CSW01_02970 -0.5 -2.6 glutamate--cysteine ligase compare
CSW01_06950 -0.5 -3.6 ATP-dependent RNA helicase HrpA compare
CSW01_00265 -0.5 -3.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
CSW01_13730 -0.5 -2.7 ADP compounds hydrolase NudE compare
CSW01_02265 -0.5 -2.5 arginine repressor compare
CSW01_13620 -0.5 -3.8 aspartate ammonia-lyase compare
CSW01_08675 -0.5 -1.1 DUF2007 domain-containing protein compare
CSW01_01830 -0.5 -1.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_05480 -0.5 -1.7 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For lb_anaerobic LB in Vibrio cholerae E7946 ATCC 55056

For lb_anaerobic LB across organisms