Experiment set5IT092 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB, pH7

200 most important genes:

  gene name fitness t score description  
Ga0059261_2285 -3.3 -3.0 Fe2+ transport system protein A compare
Ga0059261_0171 -3.2 -3.0 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1911 -3.1 -2.9 Thioredoxin-like proteins and domains compare
Ga0059261_0170 -2.2 -5.0 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_0172 -2.2 -7.6 Cytochrome c biogenesis factor compare
Ga0059261_0790 -2.1 -3.4 putative membrane protein insertion efficiency factor compare
Ga0059261_0175 -2.1 -7.7 heme exporter protein CcmC compare
Ga0059261_0349 -2.0 -4.3 MarR family compare
Ga0059261_4188 -1.9 -7.1 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_4187 -1.9 -10.4 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_2189 -1.8 -8.1 uncharacterized domain 1 compare
Ga0059261_0163 -1.8 -3.9 Major Facilitator Superfamily compare
Ga0059261_2707 -1.6 -8.3 fructose-1,6-bisphosphatase, class II compare
Ga0059261_1909 -1.6 -6.8 MAF protein compare
Ga0059261_2490 -1.4 -5.6 Small protein A (tmRNA-binding) compare
Ga0059261_2417 -1.4 -3.8 phytoene desaturase compare
Ga0059261_0613 -1.4 -3.9 FecR family protein compare
Ga0059261_4224 -1.4 -2.1 hypothetical protein compare
Ga0059261_1985 -1.4 -2.8 transcriptional regulator NrdR compare
Ga0059261_2286 -1.4 -5.3 Fe2+ transport system protein B compare
Ga0059261_2444 -1.3 -4.1 5-aminolevulinic acid synthase compare
Ga0059261_3488 -1.3 -2.0 Histidine kinase/HAMP domain compare
Ga0059261_1560 -1.3 -3.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1312 -1.3 -4.1 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_2190 -1.3 -3.5 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_1369 -1.3 -7.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1339 -1.3 -1.3 hypothetical protein compare
Ga0059261_4186 -1.2 -2.2 Phosphopantetheine attachment site compare
Ga0059261_3671 -1.2 -2.6 Citrate lyase beta subunit compare
Ga0059261_2243 -1.2 -2.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3502 -1.2 -3.0 Fatty acid desaturase compare
Ga0059261_0664 -1.1 -1.7 pseudouridine synthase, RluA family compare
Ga0059261_3119 -1.1 -3.4 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_0245 -1.0 -1.9 pseudouridine synthase compare
Ga0059261_1382 -1.0 -5.3 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_3979 -1.0 -2.8 elongation factor 4 compare
Ga0059261_2181 -1.0 -7.6 penicillin-binding protein, 1A family compare
Ga0059261_1472 -1.0 -2.1 hypothetical protein compare
Ga0059261_0650 -1.0 -1.7 Negative regulator of beta-lactamase expression compare
Ga0059261_1335 -1.0 -3.6 Predicted ATPase compare
Ga0059261_0321 -1.0 -1.7 hypothetical protein compare
Ga0059261_3637 -1.0 -1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_2391 -1.0 -1.1 Helix-turn-helix domain compare
Ga0059261_0197 -1.0 -1.3 hypothetical protein compare
Ga0059261_1928 -0.9 -3.0 Predicted permeases compare
Ga0059261_2005 -0.9 -3.1 protoheme IX farnesyltransferase compare
Ga0059261_3512 -0.9 -1.8 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Ga0059261_2471 -0.9 -1.5 hypothetical protein compare
Ga0059261_2179 -0.9 -5.6 Phospholipid N-methyltransferase compare
Ga0059261_1563 -0.9 -2.0 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_3101 -0.9 -2.3 nucleotide sugar dehydrogenase compare
Ga0059261_1830 -0.9 -1.3 hypothetical protein compare
Ga0059261_1696 -0.9 -2.7 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1419 -0.9 -3.1 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_3097 -0.9 -3.7 Calcineurin-like phosphoesterase compare
Ga0059261_3064 -0.9 -2.3 hypothetical protein compare
Ga0059261_3125 -0.9 -1.8 Imidazoleglycerol-phosphate synthase compare
Ga0059261_3506 -0.8 -1.4 Predicted permeases compare
Ga0059261_0290 -0.8 -3.0 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_3657 -0.8 -4.2 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_1370 -0.8 -4.3 Signal transduction histidine kinase compare
Ga0059261_1951 -0.8 -2.8 NADPH-glutathione reductase (EC 1.8.1.7) compare
Ga0059261_1962 -0.8 -2.1 RNase HII (EC 3.1.26.4) compare
Ga0059261_2194 -0.8 -2.5 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_1846 -0.8 -4.3 Xaa-Pro aminopeptidase compare
Ga0059261_1026 -0.8 -2.7 DNA repair protein RecN compare
Ga0059261_3227 -0.8 -1.4 GTP-binding protein YchF compare
Ga0059261_3602 -0.8 -2.6 Glutaredoxin, GrxC family compare
Ga0059261_4013 -0.7 -1.8 hypothetical protein compare
Ga0059261_2742 -0.7 -1.7 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
Ga0059261_2013 -0.7 -5.2 signal peptidase I, bacterial type compare
Ga0059261_3276 -0.7 -4.0 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_2378 -0.7 -1.5 phage virion morphogenesis (putative tail completion) protein compare
Ga0059261_4120 -0.7 -1.2 Stress responsive A/B Barrel Domain compare
Ga0059261_1939 -0.7 -0.7 putative phosphoesterase compare
Ga0059261_0875 -0.7 -1.4 Leucyl aminopeptidase compare
Ga0059261_1287 -0.7 -4.1 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_1292 -0.7 -1.6 hypothetical protein compare
Ga0059261_0921 -0.7 -1.4 hypothetical protein compare
Ga0059261_2458 -0.7 -3.9 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_3339 -0.7 -3.5 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_0037 -0.7 -4.5 hypothetical protein compare
Ga0059261_3359 -0.7 -1.0 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_0951 -0.7 -2.9 hypothetical protein compare
Ga0059261_0452 -0.6 -2.8 Predicted membrane protein compare
Ga0059261_3156 -0.6 -2.7 peptidoglycan-associated lipoprotein compare
Ga0059261_3129 -0.6 -3.8 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_1565 -0.6 -4.6 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_4060 -0.6 -1.4 Predicted membrane protein compare
Ga0059261_1273 -0.6 -2.3 DnaJ domain compare
Ga0059261_3833 -0.6 -1.8 hypothetical protein compare
Ga0059261_2244 -0.6 -4.2 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_1078 -0.6 -1.0 Response regulator receiver domain compare
Ga0059261_1566 -0.6 -3.6 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_2191 -0.6 -3.6 ribosomal subunit interface protein compare
Ga0059261_3083 -0.6 -1.8 hypothetical protein compare
Ga0059261_1214 -0.6 -1.1 hypothetical protein compare
Ga0059261_1612 -0.6 -1.0 hypothetical protein compare
Ga0059261_3191 -0.6 -2.8 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_3130 -0.6 -3.2 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_2015 -0.6 -2.3 maleylacetoacetate isomerase compare
Ga0059261_3992 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_4012 -0.5 -1.1 AMP nucleosidase compare
Ga0059261_2021 -0.5 -4.2 Protein of unknown function (DUF2029) compare
Ga0059261_0817 -0.5 -2.5 GTP-binding protein TypA/BipA compare
Ga0059261_2365 -0.5 -1.7 Mu-like prophage FluMu protein gp41 compare
Ga0059261_1929 -0.5 -2.0 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_3085 -0.5 -1.5 Predicted transcriptional regulators compare
Ga0059261_2277 -0.5 -1.1 hypothetical protein compare
Ga0059261_3114 -0.5 -3.0 hypothetical protein compare
Ga0059261_2145 -0.5 -2.4 ribosome-binding factor A compare
Ga0059261_1564 -0.5 -1.5 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_3157 -0.5 -4.1 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_2213 -0.5 -2.2 Domain of unknown function (DUF3576) compare
Ga0059261_3971 -0.5 -1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_2448 -0.5 -1.2 DNA protecting protein DprA compare
Ga0059261_3128 -0.5 -3.9 capsular exopolysaccharide family compare
Ga0059261_3121 -0.5 -2.6 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_4192 -0.5 -1.1 ATPases involved in chromosome partitioning compare
Ga0059261_2418 -0.5 -1.8 lycopene cyclase compare
Ga0059261_0239 -0.5 -1.0 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_1605 -0.5 -2.7 transcriptional regulator, TetR family compare
Ga0059261_0657 -0.5 -0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2429 -0.5 -2.0 2'-5' RNA ligase superfamily compare
Ga0059261_2708 -0.5 -2.0 hypothetical protein compare
Ga0059261_3827 -0.5 -2.5 Response regulator receiver domain compare
Ga0059261_0174 -0.5 -0.9 hypothetical protein compare
Ga0059261_2050 -0.5 -1.7 hypothetical protein compare
Ga0059261_2231 -0.5 -2.0 Uncharacterized conserved protein compare
Ga0059261_0723 -0.5 -1.9 hypothetical protein compare
Ga0059261_3186 -0.5 -3.1 Excinuclease ABC subunit C compare
Ga0059261_1190 -0.5 -2.1 hypothetical protein compare
Ga0059261_1934 -0.5 -1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Ga0059261_3207 -0.5 -1.9 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_3595 -0.5 -2.0 Site-specific recombinase XerD compare
Ga0059261_3497 -0.5 -3.0 Membrane proteins related to metalloendopeptidases compare
Ga0059261_1791 -0.5 -1.0 hypothetical protein compare
Ga0059261_0354 -0.5 -1.3 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_1561 -0.5 -2.4 Signal transduction histidine kinase compare
Ga0059261_1869 -0.5 -2.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_3609 -0.4 -1.9 Protein of unknown function (DUF2945) compare
Ga0059261_1871 -0.4 -3.2 ABC transport permease subunit compare
Ga0059261_2514 -0.4 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_0136 -0.4 -1.7 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_2019 -0.4 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1868 -0.4 -1.2 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_3714 -0.4 -1.9 Acyl-CoA hydrolase compare
Ga0059261_0062 -0.4 -1.5 hypothetical protein compare
Ga0059261_2002 -0.4 -2.4 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Ga0059261_2706 -0.4 -2.3 CAAX protease self-immunity compare
Ga0059261_2063 -0.4 -1.6 Flagellar biosynthesis protein, FliO compare
Ga0059261_3271 -0.4 -0.6 arsenate reductase (glutaredoxin) compare
Ga0059261_2101 -0.4 -1.5 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_0757 -0.4 -1.0 Predicted transcriptional regulators compare
Ga0059261_0053 -0.4 -2.2 Protein of unknown function (DUF4230) compare
Ga0059261_3365 -0.4 -1.5 hypothetical protein compare
Ga0059261_4088 -0.4 -2.2 Methionyl-tRNA formyltransferase compare
Ga0059261_3159 -0.4 -1.5 TolR protein compare
Ga0059261_3190 -0.4 -3.4 3-isopropylmalate dehydrogenase compare
Ga0059261_1986 -0.4 -2.3 Glycine/serine hydroxymethyltransferase compare
Ga0059261_0224 -0.4 -1.9 Exopolyphosphatase compare
Ga0059261_3969 -0.4 -1.8 Serine hydrolase compare
Ga0059261_2995 -0.4 -2.0 hypothetical protein compare
Ga0059261_2501 -0.4 -2.5 C-terminal peptidase (prc) compare
Ga0059261_1545 -0.4 -1.6 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_0153 -0.4 -1.4 Serine acetyltransferase compare
Ga0059261_1075 -0.4 -0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0494 -0.4 -1.2 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_2347 -0.4 -1.2 hypothetical protein compare
Ga0059261_3638 -0.4 -1.0 Predicted integral membrane protein (DUF2282) compare
Ga0059261_0719 -0.4 -1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_4203 -0.4 -1.7 Arabinose efflux permease compare
Ga0059261_1285 -0.4 -2.3 Uncharacterized conserved protein compare
Ga0059261_2195 -0.4 -2.1 Nucleotide-binding protein implicated in inhibition of septum formation compare
Ga0059261_3885 -0.4 -1.1 K+-transporting ATPase, C subunit compare
Ga0059261_0920 -0.4 -1.4 rRNA methylases compare
Ga0059261_1360 -0.4 -2.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_2498 -0.4 -1.6 hypothetical protein compare
Ga0059261_3825 -0.4 -1.6 thiol reductant ABC exporter, CydD subunit compare
Ga0059261_3615 -0.4 -0.6 hypothetical protein compare
Ga0059261_0850 -0.4 -0.8 hypothetical protein compare
Ga0059261_0918 -0.4 -1.7 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_3432 -0.4 -1.6 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_3815 -0.4 -1.4 hypothetical protein compare
Ga0059261_1825 -0.4 -1.7 hypothetical protein compare
Ga0059261_0633 -0.4 -0.6 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0266 -0.4 -0.8 hypothetical protein compare
Ga0059261_0059 -0.4 -0.7 Stress-induced morphogen (activity unknown) compare
Ga0059261_2560 -0.4 -2.6 transcriptional regulator, TetR family compare
Ga0059261_4169 -0.4 -1.2 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_3839 -0.4 -1.5 hypothetical protein compare
Ga0059261_1500 -0.4 -1.3 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_1451 -0.4 -1.3 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_1876 -0.4 -2.1 Predicted membrane protein compare
Ga0059261_1293 -0.4 -2.9 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_4133 -0.4 -1.5 hypothetical protein compare
Ga0059261_3153 -0.4 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_4204 -0.4 -1.3 transcriptional regulator, TetR family compare
Ga0059261_1601 -0.4 -0.8 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_2293 -0.4 -2.0 cell division ATP-binding protein FtsE compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in pH experiments