Experiment set5IT091 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_18HR_ZN19B

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -6.3 -4.4 outer membrane protein TolC compare
CSW01_09245 -4.9 -3.4 Holliday junction branch migration protein RuvA compare
CSW01_02890 -4.8 -7.4 aspartate kinase compare
CSW01_01015 -4.5 -7.5 DNA helicase II compare
CSW01_12250 -4.4 -5.2 site-specific tyrosine recombinase XerD compare
CSW01_00650 -4.3 -5.1 tyrosine recombinase XerC compare
CSW01_04650 -4.3 -2.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_11535 -4.2 -5.8 thiamine-phosphate kinase compare
CSW01_09240 -4.1 -2.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_02875 -3.9 -8.2 DNA recombination/repair protein RecA compare
CSW01_01300 -3.7 -2.5 sugar ABC transporter compare
CSW01_05630 -3.3 -15.2 replication-associated recombination protein A compare
CSW01_10340 -3.2 -5.3 MinD/ParA family protein compare
CSW01_04845 -3.2 -9.9 D-alanyl-D-alanine carboxypeptidase compare
CSW01_03785 -3.1 -2.1 phosphate ABC transporter permease compare
CSW01_03790 -3.1 -5.0 phosphate ABC transporter, permease protein PstA compare
CSW01_08450 -2.8 -4.2 antimicrobial peptide ABC transporter permease SapB compare
CSW01_01125 -2.7 -13.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_03795 -2.7 -1.8 phosphate ABC transporter ATP-binding protein compare
CSW01_18350 -2.6 -1.7 cell division protein DedD compare
CSW01_10190 -2.5 -8.6 nucleoid-associated protein compare
CSW01_11255 -2.5 -8.6 flagellar biosynthesis protein FlgP compare
CSW01_02020 -2.5 -4.1 phosphoadenosine phosphosulfate reductase compare
CSW01_01295 -2.4 -1.6 ABC transporter permease compare
CSW01_13420 -2.2 -3.8 elongation factor P--(R)-beta-lysine ligase compare
CSW01_03325 -2.2 -1.5 porin compare
CSW01_05575 -2.1 -5.2 phosphate acetyltransferase compare
CSW01_08620 -2.0 -12.8 chromosome partition protein MukB compare
CSW01_08625 -1.9 -7.2 chromosome partition protein MukE compare
CSW01_02830 -1.8 -8.2 murein hydrolase activator NlpD compare
CSW01_03950 -1.8 -4.8 hypothetical protein compare
CSW01_11775 -1.7 -11.0 exodeoxyribonuclease V subunit alpha compare
CSW01_13305 -1.7 -2.6 shikimate kinase compare
CSW01_09250 -1.7 -1.1 crossover junction endodeoxyribonuclease RuvC compare
CSW01_09525 -1.7 -1.1 DNA translocase FtsK compare
CSW01_04375 -1.6 -3.3 SsrA-binding protein compare
CSW01_15120 -1.6 -4.5 iron(III) ABC transporter permease compare
CSW01_08630 -1.6 -7.6 condensin subunit F compare
CSW01_11565 -1.6 -3.2 transcriptional regulator NrdR compare
CSW01_10445 -1.6 -2.8 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_03975 -1.5 -6.4 exodeoxyribonuclease VII large subunit compare
CSW01_05265 -1.5 -2.1 methionine--tRNA ligase compare
CSW01_13285 -1.5 -2.9 ribulose-phosphate 3-epimerase compare
CSW01_10750 -1.5 -3.2 outer membrane protein assembly factor BamC compare
CSW01_18760 -1.5 -9.3 dihydroorotase compare
CSW01_07210 -1.4 -3.8 hypothetical protein compare
CSW01_03985 -1.4 -4.0 GMP synthase (glutamine-hydrolyzing) compare
CSW01_09560 -1.4 -7.1 orotidine-5'-phosphate decarboxylase compare
CSW01_15110 -1.4 -6.0 iron(III) ABC transporter substrate-binding protein compare
CSW01_05855 -1.3 -6.5 hypothetical protein compare
CSW01_01265 -1.3 -2.4 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_14680 -1.3 -2.1 aminotransferase compare
CSW01_00560 -1.3 -0.9 DNA polymerase I compare
CSW01_13300 -1.3 -5.5 3-dehydroquinate synthase compare
CSW01_09620 -1.2 -3.5 trigger factor compare
CSW01_13680 -1.2 -10.1 DNA helicase RecG compare
CSW01_02015 -1.2 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
CSW01_04390 -1.2 -2.7 outer membrane protein assembly factor BamE compare
CSW01_08465 -1.2 -2.1 ABC transporter ATP-binding protein compare
CSW01_10455 -1.2 -3.8 citrate synthase compare
CSW01_14495 -1.2 -3.9 NUDIX hydrolase compare
CSW01_07200 -1.2 -2.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_09605 -1.1 -5.9 endopeptidase La compare
CSW01_11690 -1.1 -7.2 hypothetical protein compare
CSW01_12770 -1.1 -4.8 ABC transporter permease compare
CSW01_02270 -1.1 -5.5 malate dehydrogenase compare
CSW01_00450 -1.1 -1.9 SCP2 domain-containing protein compare
CSW01_13450 -1.1 -1.9 EF-P beta-lysylation protein EpmB compare
CSW01_07230 -1.1 -5.0 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_12465 -1.1 -4.0 elongation factor 4 compare
CSW01_07490 -1.1 -6.1 dihydroorotate dehydrogenase (quinone) compare
CSW01_01120 -1.0 -8.3 orotate phosphoribosyltransferase compare
CSW01_06315 -1.0 -4.5 DUF3943 domain-containing protein compare
CSW01_01245 -1.0 -3.2 lipopolysaccharide heptosyltransferase II compare
CSW01_10875 -1.0 -3.3 redox-regulated ATPase YchF compare
CSW01_13805 -1.0 -2.9 Hsp33 family molecular chaperone HslO compare
CSW01_04570 -1.0 -4.1 exodeoxyribonuclease 7 small subunit compare
CSW01_14910 -1.0 -1.8 cold-shock protein compare
CSW01_14055 -1.0 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_11785 -1.0 -0.6 exonuclease V subunit gamma compare
CSW01_10710 -1.0 -6.5 deferrochelatase compare
CSW01_15115 -0.9 -4.3 iron(III) ABC transporter permease compare
CSW01_17780 -0.9 -2.2 hypothetical protein compare
CSW01_12365 -0.9 -2.4 inorganic phosphate transporter compare
CSW01_06015 -0.9 -5.4 NAD-dependent malic enzyme compare
CSW01_13635 -0.9 -6.8 thiol:disulfide interchange protein DsbD compare
CSW01_10355 -0.9 -3.4 phosphohistidine phosphatase SixA compare
CSW01_11260 -0.9 -2.1 hypothetical protein compare
CSW01_01515 -0.9 -2.5 type II 3-dehydroquinate dehydratase compare
CSW01_04850 -0.9 -3.8 septal ring lytic transglycosylase RlpA compare
CSW01_15125 -0.9 -3.6 iron(III) ABC transporter ATP-binding protein compare
CSW01_11220 -0.9 -3.0 flagellar basal body rod protein FlgC compare
CSW01_11670 -0.9 -0.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_07195 -0.9 -2.5 cytochrome biogenesis protein compare
CSW01_09720 -0.9 -0.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_05025 -0.9 -5.3 transcriptional regulator compare
CSW01_01530 -0.9 -6.8 cyclic nucleotide-binding protein compare
CSW01_10440 -0.9 -2.8 succinate dehydrogenase flavoprotein subunit compare
CSW01_00465 -0.9 -1.6 twin-arginine translocase subunit TatB compare
CSW01_12105 -0.9 -6.6 carbamoyl-phosphate synthase small subunit compare
CSW01_07780 -0.9 -4.7 DUF3450 domain-containing protein compare
CSW01_12950 -0.9 -5.4 adenylyl-sulfate kinase compare
CSW01_15335 -0.9 -3.5 glycine cleavage system protein H compare
CSW01_08240 -0.9 -2.5 ATP-binding protein compare
CSW01_05580 -0.9 -4.2 acetate kinase compare
CSW01_05195 -0.9 -3.9 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_02970 -0.9 -4.8 glutamate--cysteine ligase compare
CSW01_12100 -0.9 -7.4 carbamoyl-phosphate synthase large chain compare
CSW01_10260 -0.8 -2.0 thiol:disulfide interchange protein DsbE compare
CSW01_05370 -0.8 -1.1 YbaB/EbfC family nucleoid-associated protein compare
CSW01_16785 -0.8 -2.3 hypothetical protein compare
CSW01_14125 -0.8 -3.6 1,4-alpha-glucan branching enzyme compare
CSW01_11730 -0.8 -1.7 2-dehydropantoate 2-reductase compare
CSW01_06025 -0.8 -4.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_03980 -0.8 -4.8 IMP dehydrogenase compare
CSW01_11915 -0.8 -3.4 hypothetical protein compare
CSW01_13560 -0.8 -5.7 methylenetetrahydrofolate reductase compare
CSW01_11870 -0.8 -6.0 DNA repair protein RadA compare
CSW01_14245 -0.8 -2.9 hypothetical protein compare
CSW01_05375 -0.8 -4.3 recombination protein RecR compare
CSW01_00570 -0.8 -3.1 cytochrome c4 compare
CSW01_04105 -0.8 -3.9 sodium pump decarboxylase compare
CSW01_07775 -0.8 -5.2 flagellar motor protein MotA compare
CSW01_02010 -0.8 -4.4 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
CSW01_15870 -0.8 -1.7 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_04585 -0.7 -3.6 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_05890 -0.7 -4.1 hypothetical protein compare
CSW01_02315 -0.7 -5.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_02490 -0.7 -4.0 glutathione synthetase compare
CSW01_07150 -0.7 -1.7 spermidine/putrescine ABC transporter permease PotC compare
CSW01_01350 -0.7 -6.4 polysaccharide biosynthesis protein compare
CSW01_00540 -0.7 -1.2 hypothetical protein compare
CSW01_12725 -0.7 -4.6 aspartate carbamoyltransferase compare
CSW01_01190 -0.7 -3.4 glycosyltransferase family 2 protein compare
CSW01_00065 -0.7 -3.9 DNA replication and repair protein RecF compare
CSW01_01045 -0.7 -5.8 DNA helicase RecQ compare
CSW01_10420 -0.7 -4.0 succinyl-CoA ligase subunit beta compare
CSW01_07770 -0.7 -3.4 MotA/TolQ/ExbB proton channel family protein compare
CSW01_01240 -0.7 -4.0 lipopolysaccharide biosynthesis protein compare
CSW01_07760 -0.7 -3.2 energy transducer TonB compare
CSW01_03915 -0.7 -1.6 Fe-S assembly protein IscX compare
CSW01_12815 -0.7 -3.9 RNA polymerase sigma-54 factor compare
CSW01_15680 -0.7 -1.7 DUF3265 domain-containing protein compare
CSW01_05020 -0.7 -2.0 regulatory protein ToxS compare
CSW01_11780 -0.7 -0.8 exodeoxyribonuclease V subunit beta compare
CSW01_11215 -0.7 -3.2 flagellar hook assembly protein FlgD compare
CSW01_07755 -0.7 -3.3 hypothetical protein compare
CSW01_04935 -0.7 -0.7 phosphocarrier protein HPr compare
CSW01_17495 -0.7 -3.9 glycerol-3-phosphate dehydrogenase compare
CSW01_03075 -0.7 -2.1 phosphoheptose isomerase compare
CSW01_13410 -0.7 -3.0 protein-export protein SecB compare
CSW01_06325 -0.7 -1.2 hypothetical protein compare
CSW01_13340 -0.6 -4.4 DNA-binding transcriptional regulator OxyR compare
CSW01_17090 -0.6 -3.1 SPOR domain-containing protein compare
CSW01_10560 -0.6 -2.2 chorismate synthase compare
CSW01_12240 -0.6 -5.0 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_10415 -0.6 -3.1 succinate--CoA ligase subunit alpha compare
CSW01_12260 -0.6 -3.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
CSW01_12875 -0.6 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
CSW01_00850 -0.6 -5.5 multidrug resistance protein compare
CSW01_14130 -0.6 -1.1 hypothetical protein compare
CSW01_03870 -0.6 -0.8 inositol monophosphatase compare
CSW01_07155 -0.6 -2.2 spermidine/putrescine ABC transporter permease PotB compare
CSW01_13960 -0.6 -5.0 potassium uptake protein TrkH compare
CSW01_04465 -0.6 -2.0 hypothetical protein compare
CSW01_14085 -0.6 -1.3 transcriptional regulator compare
CSW01_12885 -0.6 -4.5 fructose 1,6-bisphosphatase compare
CSW01_07160 -0.6 -3.4 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_14080 -0.6 -0.8 DUF3283 domain-containing protein compare
CSW01_01140 -0.6 -2.0 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_06950 -0.6 -4.3 ATP-dependent RNA helicase HrpA compare
CSW01_18570 -0.6 -4.4 glycine C-acetyltransferase compare
CSW01_11115 -0.6 -1.7 hypothetical protein compare
CSW01_03475 -0.6 -2.0 ATP-dependent RNA helicase SrmB compare
CSW01_06810 -0.6 -0.8 hypothetical protein compare
CSW01_02520 -0.6 -4.3 iron-regulated virulence regulatory protein IrgB compare
CSW01_00460 -0.6 -2.1 twin-arginine translocase subunit TatA compare
CSW01_00470 -0.6 -2.3 twin-arginine translocase subunit TatC compare
CSW01_06530 -0.6 -3.9 aromatic amino acid aminotransferase compare
CSW01_12765 -0.6 -3.1 outer membrane lipid asymmetry maintenance protein MlaD compare
CSW01_07205 -0.6 -3.3 copper-translocating P-type ATPase compare
CSW01_01185 -0.6 -3.0 ADP-heptose--LPS heptosyltransferase compare
CSW01_11755 -0.6 -3.4 murein transglycosylase compare
CSW01_02265 -0.6 -2.8 arginine repressor compare
CSW01_04195 -0.6 -3.6 class I SAM-dependent methyltransferase compare
CSW01_17080 -0.6 -1.6 DUF3319 domain-containing protein compare
CSW01_01995 -0.6 -3.3 iron-hydroxamate ABC transporter substrate-binding protein compare
CSW01_18635 -0.6 -2.2 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_02755 -0.6 -0.9 glutamyl-tRNA amidotransferase compare
CSW01_19435 -0.5 -1.5 hypothetical protein compare
CSW01_01020 -0.5 -1.8 hypothetical protein compare
CSW01_11120 -0.5 -1.6 hypothetical protein compare
CSW01_12680 -0.5 -3.7 cytosol aminopeptidase compare
CSW01_03415 -0.5 -2.4 lipoprotein NlpI compare
CSW01_00260 -0.5 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
CSW01_00855 -0.5 -4.0 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_08705 -0.5 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_10390 -0.5 -2.2 ferrous iron transport protein A compare
CSW01_02085 -0.5 -3.1 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_10285 -0.5 -2.0 heme exporter protein CcmB compare


Specific Phenotypes

For 7 genes in this experiment

For lb_0.5%bileacids_aerobic LB_0.5%bileacids in Vibrio cholerae E7946 ATCC 55056

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms