Experiment set5IT090 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_aerobic_18HR_ZN19A

200 most important genes:

  gene name fitness t score description  
CSW01_11535 -4.1 -6.2 thiamine-phosphate kinase compare
CSW01_13420 -2.8 -3.2 elongation factor P--(R)-beta-lysine ligase compare
CSW01_02890 -2.6 -11.9 aspartate kinase compare
CSW01_03795 -2.5 -1.7 phosphate ABC transporter ATP-binding protein compare
CSW01_18350 -2.4 -1.6 cell division protein DedD compare
CSW01_04650 -2.4 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_09245 -2.3 -6.9 Holliday junction branch migration protein RuvA compare
CSW01_12250 -2.3 -7.5 site-specific tyrosine recombinase XerD compare
CSW01_03790 -2.2 -4.1 phosphate ABC transporter, permease protein PstA compare
CSW01_08935 -2.2 -3.9 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_10190 -2.1 -6.6 nucleoid-associated protein compare
CSW01_03870 -2.1 -1.4 inositol monophosphatase compare
CSW01_00650 -2.0 -7.7 tyrosine recombinase XerC compare
CSW01_01295 -2.0 -1.8 ABC transporter permease compare
CSW01_03785 -1.9 -3.5 phosphate ABC transporter permease compare
CSW01_04375 -1.8 -4.3 SsrA-binding protein compare
CSW01_02875 -1.8 -6.7 DNA recombination/repair protein RecA compare
CSW01_01015 -1.7 -10.8 DNA helicase II compare
CSW01_09240 -1.7 -5.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_10875 -1.6 -3.9 redox-regulated ATPase YchF compare
CSW01_01300 -1.6 -4.0 sugar ABC transporter compare
CSW01_03985 -1.6 -3.6 GMP synthase (glutamine-hydrolyzing) compare
CSW01_13305 -1.5 -2.2 shikimate kinase compare
CSW01_09525 -1.5 -1.0 DNA translocase FtsK compare
CSW01_10445 -1.5 -2.4 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_18760 -1.5 -9.1 dihydroorotase compare
CSW01_05575 -1.5 -3.8 phosphate acetyltransferase compare
CSW01_08450 -1.5 -2.6 antimicrobial peptide ABC transporter permease SapB compare
CSW01_07490 -1.4 -6.1 dihydroorotate dehydrogenase (quinone) compare
CSW01_13805 -1.4 -3.4 Hsp33 family molecular chaperone HslO compare
CSW01_13450 -1.4 -2.3 EF-P beta-lysylation protein EpmB compare
CSW01_01265 -1.4 -2.1 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_03410 -1.3 -2.3 polyribonucleotide nucleotidyltransferase compare
CSW01_12365 -1.3 -2.8 inorganic phosphate transporter compare
CSW01_08620 -1.3 -9.4 chromosome partition protein MukB compare
CSW01_08465 -1.3 -2.0 ABC transporter ATP-binding protein compare
CSW01_16195 -1.3 -1.9 DUF645 domain-containing protein compare
CSW01_00560 -1.3 -1.2 DNA polymerase I compare
CSW01_08630 -1.3 -5.9 condensin subunit F compare
CSW01_09250 -1.2 -1.3 crossover junction endodeoxyribonuclease RuvC compare
CSW01_09560 -1.2 -5.2 orotidine-5'-phosphate decarboxylase compare
CSW01_11670 -1.2 -1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_00470 -1.2 -3.6 twin-arginine translocase subunit TatC compare
CSW01_01120 -1.1 -8.9 orotate phosphoribosyltransferase compare
CSW01_15120 -1.1 -3.1 iron(III) ABC transporter permease compare
CSW01_07195 -1.0 -3.0 cytochrome biogenesis protein compare
CSW01_12320 -1.0 -1.4 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_14495 -1.0 -2.5 NUDIX hydrolase compare
CSW01_12100 -1.0 -7.9 carbamoyl-phosphate synthase large chain compare
CSW01_14055 -1.0 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_06585 -1.0 -2.3 fumarate hydratase compare
CSW01_09485 -1.0 -2.6 DUF1425 domain-containing protein compare
CSW01_11565 -0.9 -1.9 transcriptional regulator NrdR compare
CSW01_03980 -0.9 -5.2 IMP dehydrogenase compare
CSW01_12105 -0.9 -6.8 carbamoyl-phosphate synthase small subunit compare
CSW01_07210 -0.9 -3.0 hypothetical protein compare
CSW01_08625 -0.9 -4.4 chromosome partition protein MukE compare
CSW01_18525 -0.9 -2.3 integrase compare
CSW01_05265 -0.9 -1.5 methionine--tRNA ligase compare
CSW01_13300 -0.9 -4.3 3-dehydroquinate synthase compare
CSW01_02490 -0.9 -4.6 glutathione synthetase compare
CSW01_01245 -0.9 -2.7 lipopolysaccharide heptosyltransferase II compare
CSW01_11775 -0.9 -6.1 exodeoxyribonuclease V subunit alpha compare
CSW01_03055 -0.9 -2.2 cytochrome c1 compare
CSW01_11730 -0.9 -1.5 2-dehydropantoate 2-reductase compare
CSW01_11690 -0.9 -6.7 hypothetical protein compare
CSW01_05580 -0.9 -3.8 acetate kinase compare
CSW01_05065 -0.8 -4.7 N-acetylglucosamine repressor compare
CSW01_10255 -0.8 -1.3 cytochrome c-type biogenesis protein CcmH compare
CSW01_14910 -0.8 -2.0 cold-shock protein compare
CSW01_11915 -0.8 -2.5 hypothetical protein compare
CSW01_10710 -0.8 -5.2 deferrochelatase compare
CSW01_10340 -0.8 -2.5 MinD/ParA family protein compare
CSW01_13240 -0.8 -5.3 N-succinylglutamate 5-semialdehyde dehydrogenase compare
CSW01_12725 -0.8 -5.2 aspartate carbamoyltransferase compare
CSW01_13250 -0.8 -4.4 aspartate aminotransferase family protein compare
CSW01_01490 -0.8 -2.2 Fis family transcriptional regulator compare
CSW01_07205 -0.8 -4.1 copper-translocating P-type ATPase compare
CSW01_04850 -0.8 -3.0 septal ring lytic transglycosylase RlpA compare
CSW01_00465 -0.8 -1.8 twin-arginine translocase subunit TatB compare
CSW01_13445 -0.8 -0.9 elongation factor P compare
CSW01_00095 -0.7 -1.8 hypothetical protein compare
CSW01_18830 -0.7 -3.9 DeoR/GlpR family transcriptional regulator compare
CSW01_09620 -0.7 -1.7 trigger factor compare
CSW01_16310 -0.7 -0.8 DUF3709 domain-containing protein compare
CSW01_02790 -0.7 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
CSW01_05370 -0.7 -1.2 YbaB/EbfC family nucleoid-associated protein compare
CSW01_19555 -0.7 -2.4 response regulator compare
CSW01_00180 -0.7 -4.7 cytochrome c oxidase accessory protein CcoG compare
CSW01_11115 -0.7 -3.0 hypothetical protein compare
CSW01_15000 -0.7 -1.8 rfbP protein compare
CSW01_12255 -0.7 -1.9 flavodoxin FldB compare
CSW01_09520 -0.7 -1.7 disulfide bond formation protein B compare
CSW01_02265 -0.7 -3.4 arginine repressor compare
CSW01_15005 -0.7 -2.6 HNH endonuclease compare
CSW01_04820 -0.7 -4.7 serine hydroxymethyltransferase compare
CSW01_02270 -0.7 -3.5 malate dehydrogenase compare
CSW01_06870 -0.7 -3.0 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_02450 -0.7 -4.3 pyrroline-5-carboxylate reductase compare
CSW01_07495 -0.7 -4.8 NAD-glutamate dehydrogenase compare
CSW01_12665 -0.6 -3.1 RDD family protein compare
CSW01_12680 -0.6 -4.2 cytosol aminopeptidase compare
CSW01_13245 -0.6 -3.8 arginine N-succinyltransferase compare
CSW01_00570 -0.6 -2.5 cytochrome c4 compare
CSW01_11120 -0.6 -1.9 hypothetical protein compare
CSW01_00460 -0.6 -2.2 twin-arginine translocase subunit TatA compare
CSW01_14680 -0.6 -1.1 aminotransferase compare
CSW01_01045 -0.6 -5.2 DNA helicase RecQ compare
CSW01_10440 -0.6 -1.9 succinate dehydrogenase flavoprotein subunit compare
CSW01_07160 -0.6 -2.9 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_12335 -0.6 -4.1 outer membrane protein TolC compare
CSW01_10145 -0.6 -1.5 ribonuclease E compare
CSW01_10420 -0.6 -3.0 succinyl-CoA ligase subunit beta compare
CSW01_04845 -0.6 -2.4 D-alanyl-D-alanine carboxypeptidase compare
CSW01_02530 -0.6 -3.0 D-erythrose-4-phosphate dehydrogenase compare
CSW01_04195 -0.6 -3.3 class I SAM-dependent methyltransferase compare
CSW01_07145 -0.6 -2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_18565 -0.6 -1.8 L-threonine 3-dehydrogenase compare
CSW01_05240 -0.6 -2.4 CBS domain-containing protein compare
CSW01_01525 -0.6 -4.2 3'-5' exonuclease compare
CSW01_10285 -0.6 -2.0 heme exporter protein CcmB compare
CSW01_01830 -0.6 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_11525 -0.6 -2.3 hypothetical protein compare
CSW01_03050 -0.6 -2.5 cytochrome b compare
CSW01_19600 -0.6 -3.3 hypothetical protein compare
CSW01_15310 -0.6 -1.6 exoribonuclease R compare
CSW01_08345 -0.6 -1.2 hypothetical protein compare
CSW01_05545 -0.6 -2.8 peptide ABC transporter substrate-binding protein compare
CSW01_06025 -0.6 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_03915 -0.6 -1.3 Fe-S assembly protein IscX compare
CSW01_18150 -0.6 -0.7 transcription initiation factor TFIIIB compare
CSW01_05555 -0.6 -2.6 oligopeptide ABC transporter permease OppC compare
CSW01_10270 -0.5 -1.8 cytochrome c-type biogenesis protein CcmE compare
CSW01_05550 -0.5 -2.5 oligopeptide ABC transporter permease OppB compare
CSW01_14235 -0.5 -2.4 copper chaperone PCu(A)C compare
CSW01_12240 -0.5 -4.4 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_09970 -0.5 -2.3 peptide-methionine (R)-S-oxide reductase compare
CSW01_19275 -0.5 -2.6 amino acid ABC transporter ATP-binding protein compare
CSW01_04285 -0.5 -1.0 toxin coregulated pilus biosynthesis protein R compare
CSW01_15730 -0.5 -0.8 VOC family protein compare
CSW01_04465 -0.5 -2.0 hypothetical protein compare
CSW01_09145 -0.5 -2.4 PTS fructose transporter subunit IIA compare
CSW01_15115 -0.5 -2.9 iron(III) ABC transporter permease compare
CSW01_05250 -0.5 -3.4 zinc/cadmium/mercury/lead-transporting ATPase compare
CSW01_07060 -0.5 -1.6 TetR/AcrR family transcriptional regulator compare
CSW01_01920 -0.5 -1.0 bacterioferritin compare
CSW01_16325 -0.5 -1.0 hypothetical protein compare
CSW01_17855 -0.5 -3.8 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_06460 -0.5 -3.4 MarR family transcriptional regulator compare
CSW01_12465 -0.5 -2.1 elongation factor 4 compare
CSW01_05020 -0.5 -1.7 regulatory protein ToxS compare
CSW01_01420 -0.5 -4.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
CSW01_07200 -0.5 -1.1 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_13410 -0.5 -2.6 protein-export protein SecB compare
CSW01_16785 -0.5 -1.6 hypothetical protein compare
CSW01_15060 -0.5 -1.1 hypothetical protein compare
CSW01_15335 -0.5 -1.9 glycine cleavage system protein H compare
CSW01_00955 -0.5 -3.5 hypothetical protein compare
CSW01_15870 -0.5 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_07225 -0.5 -2.1 cytochrome-c oxidase, cbb3-type subunit II compare
CSW01_17090 -0.5 -3.1 SPOR domain-containing protein compare
CSW01_01980 -0.5 -3.0 transcriptional regulator Zur compare
CSW01_18570 -0.5 -3.4 glycine C-acetyltransferase compare
CSW01_17555 -0.5 -2.3 LacI family transcriptional regulator compare
CSW01_04930 -0.5 -1.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_04315 -0.5 -2.9 TCP pilus virulence regulatory protein compare
CSW01_07450 -0.5 -2.1 Lon protease family protein compare
CSW01_05195 -0.5 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_08590 -0.5 -1.9 hypothetical protein compare
CSW01_10575 -0.5 -2.5 endonuclease SmrB compare
CSW01_10260 -0.5 -1.2 thiol:disulfide interchange protein DsbE compare
CSW01_17525 -0.5 -1.0 hypothetical protein compare
CSW01_14470 -0.5 -2.6 DUF134 domain-containing protein compare
CSW01_16405 -0.5 -1.9 hemagglutinin compare
CSW01_03045 -0.5 -0.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_00635 -0.5 -3.1 diaminopimelate decarboxylase compare
CSW01_11710 -0.5 -2.4 transcriptional regulator compare
CSW01_14965 -0.5 -1.2 hypothetical protein compare
CSW01_19395 -0.5 -0.4 histidine kinase compare
CSW01_18545 -0.4 -2.9 non-hemolytic enterotoxin lytic component L1 compare
CSW01_05375 -0.4 -2.1 recombination protein RecR compare
CSW01_13285 -0.4 -1.1 ribulose-phosphate 3-epimerase compare
CSW01_15030 -0.4 -1.2 hypothetical protein compare
CSW01_06970 -0.4 -0.9 DUF2256 domain-containing protein compare
CSW01_08355 -0.4 -1.2 heat-shock protein HslJ compare
CSW01_17585 -0.4 -0.6 periplasmic nitrate reductase electron transfer subunit compare
CSW01_09315 -0.4 -2.0 exodeoxyribonuclease III compare
CSW01_06560 -0.4 -1.5 6-carboxytetrahydropterin synthase QueD compare
CSW01_00170 -0.4 -2.5 thiol:disulfide interchange protein DsbA compare
CSW01_19620 -0.4 -1.6 delta-VPH compare
CSW01_11780 -0.4 -0.6 exodeoxyribonuclease V subunit beta compare
CSW01_14640 -0.4 -2.6 DUF3012 domain-containing protein compare
CSW01_06950 -0.4 -3.2 ATP-dependent RNA helicase HrpA compare
CSW01_01430 -0.4 -2.7 Zn(2+)-responsive transcriptional regulator compare
CSW01_05890 -0.4 -2.3 hypothetical protein compare
CSW01_10460 -0.4 -2.0 Nif3-like dinuclear metal center hexameric protein compare
CSW01_09955 -0.4 -2.4 L-asparaginase 1 compare
CSW01_14245 -0.4 -1.5 hypothetical protein compare
CSW01_13670 -0.4 -1.1 DNA-directed RNA polymerase subunit omega compare
CSW01_19455 -0.4 -2.1 AraC family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For lb_0.5%bileacids_aerobic LB_0.5%bileacids in Vibrio cholerae E7946 ATCC 55056

For lb_0.5%bileacids_aerobic LB_0.5%bileacids across organisms