Experiment set5IT090 for Shewanella loihica PV-4

Compare to:

Motility M4

200 most detrimental genes:

  gene name fitness t score description  
Shew_2808 +12.3 74.5 type IV pilus assembly PilZ (RefSeq) conserved
Shew_2110 +9.7 56.7 hypothetical protein (RefSeq) compare
Shew_2754 +7.5 25.2 diguanylate cyclase (RefSeq) compare
Shew_1339 +6.7 13.6 hypothetical protein (RefSeq) compare
Shew_1338 +6.4 19.7 hypothetical protein (RefSeq) compare
Shew_3381 +6.1 25.0 diguanylate cyclase (RefSeq) conserved
Shew_1337 +6.0 35.2 hypothetical protein (RefSeq) compare
Shew_3380 +5.6 37.7 TatD-related deoxyribonuclease (RefSeq) conserved
Shew_3379 +5.5 13.3 hypothetical protein (RefSeq) conserved
Shew_1397 +5.3 12.9 amino acid/peptide transporter (RefSeq) compare
Shew_3683 +4.9 23.5 extracellular solute-binding protein (RefSeq) compare
Shew_3742 +3.8 13.9 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Shew_2753 +3.7 9.5 TPR repeat-containing protein (RefSeq) compare
Shew_1681 +3.5 2.1 diguanylate cyclase with PAS/PAC sensor (RefSeq) compare
Shew_2988 +3.3 13.9 putative signal transduction protein (RefSeq) compare
Shew_1124 trmB +3.1 1.5 tRNA (guanine-N(7))-methyltransferase (RefSeq) compare
Shew_0401 +2.9 4.6 MSHA biogenesis protein MshP (RefSeq) compare
Shew_2977 +2.9 19.1 diguanylate cyclase (RefSeq) conserved
Shew_0385 +2.8 14.9 biogenesis protein MshI (RefSeq) compare
Shew_0389 +2.7 18.5 pilus (MSHA type) biogenesis protein MshL (RefSeq) compare
Shew_0400 +2.6 18.3 methylation site containing protein (RefSeq) compare
Shew_0782 +2.6 1.0 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Shew_0398 +2.6 13.7 MSHA pilin protein MshC (RefSeq) compare
Shew_0386 +2.6 19.6 fimbrial assembly family protein (RefSeq) compare
Shew_0390 +2.6 3.1 MSHA biogenesis protein MshM (RefSeq) compare
Shew_0392 +2.5 18.3 type II secretion system protein E (RefSeq) compare
Shew_0402 +2.5 14.1 MSHA biogenesis protein MshQ (RefSeq) compare
Shew_3681 +2.5 15.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0393 +2.4 15.1 type II secretion system protein (RefSeq) compare
Shew_2728 +2.4 1.0 hypothetical protein (RefSeq) compare
Shew_0399 +2.3 10.6 methylation site containing protein (RefSeq) compare
Shew_3682 +2.3 6.9 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_0387 +2.3 8.6 MSHA biogenesis protein MshJ (RefSeq) compare
Shew_0388 +2.3 6.3 MSHA biogenesis protein MshK (RefSeq) compare
Shew_0391 +2.2 11.7 TPR repeat-containing protein (RefSeq) compare
Shew_0972 +2.1 1.6 glutamate--ammonia ligase (RefSeq) compare
Shew_0301 +2.1 2.3 AsnC family transcriptional regulator (RefSeq) compare
Shew_0454 +2.0 1.1 enoyl-CoA hydratase (RefSeq) compare
Shew_1730 +1.9 2.3 hypothetical protein (RefSeq) compare
Shew_3655 +1.8 1.6 LysR family transcriptional regulator (RefSeq) compare
Shew_0453 +1.8 3.1 response regulator receiver protein (RefSeq) compare
Shew_3323 +1.7 1.1 lipase-like (RefSeq) compare
Shew_1123 +1.6 1.6 A/G-specific adenine glycosylase (RefSeq) compare
Shew_3799 +1.6 2.5 hypothetical protein (RefSeq) compare
Shew_0452 +1.6 3.4 diguanylate cyclase (RefSeq) compare
Shew_1095 +1.5 2.9 ArsR family transcriptional regulator (RefSeq) compare
Shew_1304 +1.5 1.7 cyd operon protein YbgT (RefSeq) compare
Shew_1445 +1.5 1.1 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) compare
Shew_0584 +1.5 1.4 hypothetical protein (RefSeq) compare
Shew_1727 +1.5 1.4 hypothetical protein (RefSeq) compare
Shew_2687 +1.5 3.2 hypothetical protein (RefSeq) compare
Shew_2063 +1.4 1.1 rhomboid family protein (RefSeq) compare
Shew_1593 +1.4 1.1 ribonuclease (RefSeq) compare
Shew_R0049 +1.4 3.2 tRNA-Pro (RefSeq) compare
Shew_2552 +1.4 1.2 hypothetical protein (RefSeq) compare
Shew_1092 +1.4 7.7 amino acid carrier protein (RefSeq) compare
Shew_2444 +1.4 1.8 hypothetical protein (RefSeq) compare
Shew_2307 +1.4 2.2 hypothetical protein (RefSeq) compare
Shew_1287 +1.4 1.5 hypothetical protein (RefSeq) compare
Shew_3430 +1.4 1.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_0032 +1.3 5.7 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) compare
Shew_1726 +1.3 3.5 LuxR family transcriptional regulator (RefSeq) compare
Shew_3772 +1.2 1.3 thioesterase superfamily protein (RefSeq) compare
Shew_2469 +1.2 1.1 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1431 +1.2 1.3 hypothetical protein (RefSeq) compare
Shew_2359 +1.2 0.9 uracil-DNA glycosylase superfamily protein (RefSeq) compare
Shew_3612 +1.2 2.1 general secretion pathway protein K (RefSeq) compare
Shew_2821 +1.2 1.5 lipoprotein NlpI (RefSeq) compare
Shew_2711 +1.2 1.4 AraC family transcriptional regulator (RefSeq) compare
Shew_0667 +1.2 0.9 phosphoadenosine phosphosulfate reductase (RefSeq) compare
Shew_3059 +1.2 2.6 hypothetical protein (RefSeq) compare
Shew_3115 +1.2 1.7 sodium:dicarboxylate symporter (RefSeq) compare
Shew_3613 +1.2 2.0 general secretion pathway protein J (RefSeq) compare
Shew_3343 +1.2 4.7 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1083 +1.2 1.5 apurinic endonuclease Apn1 (RefSeq) compare
Shew_3122 +1.2 0.8 PepSY-associated TM helix domain-containing protein (RefSeq) compare
Shew_3427 +1.2 3.1 patatin (RefSeq) compare
Shew_2910 +1.1 1.0 hypothetical protein (RefSeq) compare
Shew_2123 +1.1 1.0 putative sulfite oxidase subunit YedY (RefSeq) compare
Shew_0897 +1.1 1.8 hypothetical protein (RefSeq) compare
Shew_0031 +1.1 4.8 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_2105 +1.1 0.9 methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq) compare
Shew_0585 +1.1 1.5 cAMP-regulatory protein (RefSeq) compare
Shew_0412 +1.1 2.9 secretion protein HlyD family protein (RefSeq) compare
Shew_3499 +1.1 3.2 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_3546 +1.1 1.6 hypothetical protein (RefSeq) compare
Shew_3440 +1.1 0.8 prepilin peptidase (RefSeq) compare
Shew_2651 +1.1 1.4 hypothetical protein (RefSeq) compare
Shew_2953 +1.1 3.6 diguanylate cyclase (RefSeq) compare
Shew_3035 +1.1 1.5 hypothetical protein (RefSeq) compare
Shew_1859 +1.1 0.8 carbonate dehydratase (RefSeq) compare
Shew_0693 +1.1 2.3 hypothetical protein (RefSeq) compare
Shew_0848 +1.1 0.7 hypothetical protein (RefSeq) compare
Shew_2766 +1.0 1.8 thiamine biosynthesis protein ThiI (RefSeq) compare
Shew_0639 +1.0 2.8 hypothetical protein (RefSeq) compare
Shew_1683 +1.0 1.5 hypothetical protein (RefSeq) compare
Shew_2806 +1.0 1.1 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1315 +1.0 1.5 hypothetical protein (RefSeq) compare
Shew_1264 +1.0 1.2 UvrD/REP helicase (RefSeq) compare
Shew_0793 +1.0 2.2 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) compare
Shew_2857 +1.0 1.8 LysR family transcriptional regulator (RefSeq) compare
Shew_0022 +1.0 4.9 TrkH family potassium uptake protein (RefSeq) compare
Shew_0306 +1.0 5.8 diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq) compare
Shew_0567 +1.0 1.6 GTP-binding protein, HSR1-related (RefSeq) compare
Shew_2329 +1.0 1.2 putative two-component response-regulatory protein YehT (RefSeq) compare
Shew_0542 +0.9 0.8 hypothetical protein (RefSeq) compare
Shew_0583 +0.9 1.2 two component transcriptional regulator (RefSeq) compare
Shew_3176 +0.9 1.0 regulatory protein GntR, HTH (RefSeq) compare
Shew_3383 +0.9 1.2 hypothetical protein (RefSeq) compare
Shew_3578 +0.9 3.0 hypothetical protein (RefSeq) compare
Shew_0592 +0.9 2.2 hypothetical protein (RefSeq) compare
Shew_1183 +0.9 3.9 putative ABC transporter ATP-binding protein (RefSeq) compare
Shew_2288 +0.9 2.0 galactose-1-phosphate uridylyltransferase (RefSeq) compare
Shew_1855 +0.9 1.4 hypothetical protein (RefSeq) compare
Shew_2842 +0.9 1.1 peptidase M48, Ste24p (RefSeq) compare
Shew_0932 +0.9 0.9 radical SAM domain-containing protein (RefSeq) compare
Shew_2779 +0.9 1.3 amino acid ABC transporter (RefSeq) compare
Shew_1937 +0.9 1.9 peptidase M14, carboxypeptidase A (RefSeq) compare
Shew_1023 +0.9 1.3 hypothetical protein (RefSeq) compare
Shew_3743 +0.9 1.5 chorismate lyase (RefSeq) compare
Shew_1519 +0.9 2.3 hypothetical protein (RefSeq) compare
Shew_0920 +0.9 2.1 major facilitator transporter (RefSeq) compare
Shew_2825 +0.9 4.0 tRNA pseudouridine synthase B (RefSeq) compare
Shew_1133 +0.9 1.6 hypothetical protein (RefSeq) compare
Shew_3541 +0.9 1.0 thioesterase domain-containing protein (RefSeq) compare
Shew_3398 +0.8 0.6 cytochrome c, class I (RefSeq) compare
Shew_2918 +0.8 0.6 hypothetical protein (RefSeq) compare
Shew_0749 +0.8 1.5 hypothetical protein (RefSeq) compare
Shew_3004 +0.8 2.0 hypothetical protein (RefSeq) compare
Shew_2191 +0.8 0.6 hypothetical protein (RefSeq) compare
Shew_1125 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_0503 +0.8 1.6 thioredoxin domain-containing protein (RefSeq) compare
Shew_2883 +0.8 1.1 BolA family protein (RefSeq) compare
Shew_1864 +0.8 2.6 glucose-specific PTS system component (RefSeq) compare
Shew_1766 +0.8 1.8 signal transduction protein (RefSeq) compare
Shew_2052 +0.8 0.7 TetR family transcriptional regulator (RefSeq) compare
Shew_0690 +0.8 2.6 endonuclease/exonuclease/phosphatase (RefSeq) compare
Shew_3260 +0.8 1.8 porin (RefSeq) compare
Shew_3637 ompR +0.8 1.0 osmolarity response regulator (RefSeq) compare
Shew_2457 +0.8 2.9 nuclease SbcCD, D subunit (RefSeq) compare
Shew_0902 +0.8 1.4 (acyl-carrier-protein) S-malonyltransferase (RefSeq) compare
Shew_1454 +0.8 2.3 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_0130 +0.8 2.4 3'(2'),5'-bisphosphate nucleotidase (RefSeq) compare
Shew_0569 +0.8 1.1 HflC protein (RefSeq) compare
Shew_2120 +0.8 2.2 hypothetical protein (RefSeq) compare
Shew_0992 +0.8 1.3 BsuBIPstI restriction endonuclease domain-containing protein (RefSeq) compare
Shew_3090 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_0854 +0.8 1.7 hypothetical protein (RefSeq) compare
Shew_1037 +0.8 0.8 DNA mismatch repair protein (RefSeq) compare
Shew_3428 +0.8 4.1 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) compare
Shew_2387 +0.8 1.2 LysR family transcriptional regulator (RefSeq) compare
Shew_1282 +0.8 1.4 hypothetical protein (RefSeq) compare
Shew_0636 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_2386 +0.8 2.9 hypothetical protein (RefSeq) compare
Shew_0282 +0.8 2.2 phospholipid/glycerol acyltransferase (RefSeq) compare
Shew_0256 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_2396 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_0704 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_3349 +0.8 1.6 ATP-dependent protease La (RefSeq) compare
Shew_2006 +0.8 1.9 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_3211 +0.7 1.6 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_3680 +0.7 1.3 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1465 +0.7 0.6 hypothetical protein (RefSeq) compare
Shew_2008 +0.7 0.6 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_3088 +0.7 1.9 short chain fatty acid transporter (RefSeq) compare
Shew_1679 +0.7 0.6 TetR family transcriptional regulator (RefSeq) compare
Shew_3765 +0.7 2.0 hypothetical protein (RefSeq) compare
Shew_2890 +0.7 0.7 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_0101 +0.7 1.5 endoribonuclease L-PSP (RefSeq) compare
Shew_0495 +0.7 0.6 hypothetical protein (RefSeq) compare
Shew_3570 +0.7 1.7 two component transcriptional regulator (RefSeq) compare
Shew_0621 +0.7 1.0 hypothetical protein (RefSeq) compare
Shew_2616 +0.7 1.1 GDSL family lipase (RefSeq) compare
Shew_1714 +0.7 1.3 alpha/beta hydrolase fold (RefSeq) compare
Shew_3039 +0.7 0.9 hypothetical protein (RefSeq) compare
Shew_0966 +0.7 0.8 beta alanine--pyruvate transaminase (RefSeq) compare
Shew_2369 +0.7 1.7 cyclic nucleotide-binding protein (RefSeq) compare
Shew_0461 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_1712 +0.7 1.5 hypothetical protein (RefSeq) compare
Shew_0110 +0.7 1.8 MCP methyltransferase, CheR-type (RefSeq) compare
Shew_2356 +0.7 1.0 patatin (RefSeq) compare
Shew_2362 +0.7 2.0 dihydrodipicolinate synthase (RefSeq) compare
Shew_3738 +0.7 3.5 sun protein (RefSeq) compare
Shew_0396 +0.7 0.9 methylation site containing protein (RefSeq) compare
Shew_0775 +0.7 3.7 TetR family transcriptional regulator (RefSeq) compare
Shew_2420 +0.7 2.4 peptidase M16 domain-containing protein (RefSeq) compare
Shew_3194 +0.7 4.2 LuxR family transcriptional regulator (RefSeq) compare
Shew_3371 +0.7 1.5 hypothetical protein (RefSeq) compare
Shew_1559 +0.7 0.4 hypothetical protein (RefSeq) compare
Shew_1561 +0.7 1.8 NUDIX hydrolase (RefSeq) compare
Shew_3684 +0.7 1.0 binding-protein-dependent transport systems inner membrane component (RefSeq) compare
Shew_1480 +0.7 0.9 hypothetical protein (RefSeq) compare
Shew_1419 +0.7 1.8 no description compare
Shew_3070 +0.7 1.0 extracellular solute-binding protein (RefSeq) compare
Shew_0842 +0.7 1.5 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_3292 +0.7 0.9 hypothetical protein (RefSeq) compare
Shew_0827 +0.7 0.6 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1606 +0.7 0.4 hypothetical protein (RefSeq) compare
Shew_0918 +0.7 2.6 decaheme cytochrome c (RefSeq) compare
Shew_3642 +0.7 1.1 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 15 genes in this experiment

For motility Agar in Shewanella loihica PV-4

For motility Agar across organisms