Experiment set5IT090 for Shewanella loihica PV-4

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Motility M4

Group: motility
Media: LB + Agar (3 g/L)
Culturing: PV4_ML1, Agar plate, Aerobic, at 30 (C), shaken=0 rpm
By: Kelly on 8/28/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 15 genes in this experiment

For motility Agar in Shewanella loihica PV-4

For motility Agar across organisms

SEED Subsystems

Subsystem #Specific
Bacterial Chemotaxis 2
Mannose-sensitive hemagglutinin type 4 pilus 2
Menaquinone and Phylloquinone Biosynthesis 2
Bacterial hemoglobins 1
Flagellar motility 1
Protein chaperones 1
Proteolysis in bacteria, ATP-dependent 1
Twin-arginine translocation system 1
YcfH 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
2-carboxy-1,4-naphthoquinol biosynthesis 7 7 2
superpathway of demethylmenaquinol-8 biosynthesis I 9 9 2
superpathway of demethylmenaquinol-6 biosynthesis I 9 8 2
superpathway of demethylmenaquinol-9 biosynthesis 9 8 2
superpathway of menaquinol-8 biosynthesis I 10 10 2
superpathway of menaquinol-12 biosynthesis 10 9 2
superpathway of menaquinol-9 biosynthesis 10 9 2
superpathway of menaquinol-13 biosynthesis 10 9 2
superpathway of menaquinol-6 biosynthesis 10 9 2
superpathway of menaquinol-7 biosynthesis 10 9 2
superpathway of menaquinol-10 biosynthesis 10 9 2
superpathway of menaquinol-11 biosynthesis 10 9 2
superpathway of phylloquinol biosynthesis 15 7 2
superpathway of chorismate metabolism 59 51 2