Experiment set5IT089 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_18HR_ZN18B

200 most important genes:

  gene name fitness t score description  
CSW01_04650 -3.3 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_11535 -3.2 -7.5 thiamine-phosphate kinase compare
CSW01_01300 -3.2 -3.1 sugar ABC transporter compare
CSW01_02890 -2.8 -12.3 aspartate kinase compare
CSW01_10190 -2.8 -8.3 nucleoid-associated protein compare
CSW01_00650 -2.7 -9.2 tyrosine recombinase XerC compare
CSW01_18350 -2.5 -1.6 cell division protein DedD compare
CSW01_12250 -2.4 -7.3 site-specific tyrosine recombinase XerD compare
CSW01_02875 -2.4 -8.3 DNA recombination/repair protein RecA compare
CSW01_01295 -2.3 -1.5 ABC transporter permease compare
CSW01_05575 -2.2 -5.0 phosphate acetyltransferase compare
CSW01_13420 -2.1 -3.5 elongation factor P--(R)-beta-lysine ligase compare
CSW01_09245 -2.1 -6.4 Holliday junction branch migration protein RuvA compare
CSW01_09240 -2.0 -5.2 Holliday junction branch migration DNA helicase RuvB compare
CSW01_10440 -1.8 -4.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_04375 -1.8 -5.1 SsrA-binding protein compare
CSW01_01015 -1.7 -11.3 DNA helicase II compare
CSW01_03790 -1.6 -3.8 phosphate ABC transporter, permease protein PstA compare
CSW01_04935 -1.6 -1.5 phosphocarrier protein HPr compare
CSW01_09525 -1.6 -1.0 DNA translocase FtsK compare
CSW01_03985 -1.5 -3.7 GMP synthase (glutamine-hydrolyzing) compare
CSW01_18760 -1.4 -8.2 dihydroorotase compare
CSW01_07490 -1.4 -6.7 dihydroorotate dehydrogenase (quinone) compare
CSW01_09560 -1.4 -7.0 orotidine-5'-phosphate decarboxylase compare
CSW01_05265 -1.4 -1.6 methionine--tRNA ligase compare
CSW01_08630 -1.3 -6.3 condensin subunit F compare
CSW01_10445 -1.3 -3.5 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_14055 -1.3 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_03410 -1.3 -2.0 polyribonucleotide nucleotidyltransferase compare
CSW01_09250 -1.3 -1.3 crossover junction endodeoxyribonuclease RuvC compare
CSW01_13805 -1.3 -3.2 Hsp33 family molecular chaperone HslO compare
CSW01_03870 -1.2 -1.3 inositol monophosphatase compare
CSW01_00560 -1.2 -0.9 DNA polymerase I compare
CSW01_08620 -1.2 -9.1 chromosome partition protein MukB compare
CSW01_01265 -1.2 -2.3 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_01120 -1.2 -9.5 orotate phosphoribosyltransferase compare
CSW01_14495 -1.2 -3.3 NUDIX hydrolase compare
CSW01_13450 -1.1 -2.0 EF-P beta-lysylation protein EpmB compare
CSW01_10875 -1.1 -3.4 redox-regulated ATPase YchF compare
CSW01_12100 -1.1 -9.5 carbamoyl-phosphate synthase large chain compare
CSW01_19395 -1.1 -1.7 histidine kinase compare
CSW01_08625 -1.1 -3.9 chromosome partition protein MukE compare
CSW01_10340 -1.0 -3.4 MinD/ParA family protein compare
CSW01_06585 -1.0 -2.7 fumarate hydratase compare
CSW01_08450 -1.0 -2.1 antimicrobial peptide ABC transporter permease SapB compare
CSW01_00470 -1.0 -3.3 twin-arginine translocase subunit TatC compare
CSW01_13305 -1.0 -1.6 shikimate kinase compare
CSW01_12725 -1.0 -6.8 aspartate carbamoyltransferase compare
CSW01_16310 -1.0 -1.9 DUF3709 domain-containing protein compare
CSW01_03915 -1.0 -2.3 Fe-S assembly protein IscX compare
CSW01_12255 -1.0 -3.2 flavodoxin FldB compare
CSW01_03785 -1.0 -2.2 phosphate ABC transporter permease compare
CSW01_13250 -0.9 -6.3 aspartate aminotransferase family protein compare
CSW01_07155 -0.9 -2.3 spermidine/putrescine ABC transporter permease PotB compare
CSW01_19435 -0.9 -2.2 hypothetical protein compare
CSW01_12365 -0.9 -2.2 inorganic phosphate transporter compare
CSW01_04820 -0.9 -5.9 serine hydroxymethyltransferase compare
CSW01_13285 -0.9 -2.1 ribulose-phosphate 3-epimerase compare
CSW01_04195 -0.9 -4.6 class I SAM-dependent methyltransferase compare
CSW01_13670 -0.9 -2.3 DNA-directed RNA polymerase subunit omega compare
CSW01_07195 -0.9 -3.1 cytochrome biogenesis protein compare
CSW01_07230 -0.9 -4.6 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_11690 -0.9 -6.0 hypothetical protein compare
CSW01_12105 -0.9 -6.1 carbamoyl-phosphate synthase small subunit compare
CSW01_11565 -0.9 -2.5 transcriptional regulator NrdR compare
CSW01_06030 -0.9 -2.5 helicase compare
CSW01_00180 -0.8 -6.2 cytochrome c oxidase accessory protein CcoG compare
CSW01_14125 -0.8 -3.9 1,4-alpha-glucan branching enzyme compare
CSW01_14680 -0.8 -1.5 aminotransferase compare
CSW01_10260 -0.8 -2.0 thiol:disulfide interchange protein DsbE compare
CSW01_13300 -0.8 -4.1 3-dehydroquinate synthase compare
CSW01_00465 -0.8 -2.9 twin-arginine translocase subunit TatB compare
CSW01_03980 -0.8 -4.5 IMP dehydrogenase compare
CSW01_08685 -0.8 -2.4 glycogen synthase compare
CSW01_10710 -0.8 -5.6 deferrochelatase compare
CSW01_07210 -0.8 -2.6 hypothetical protein compare
CSW01_12815 -0.7 -4.2 RNA polymerase sigma-54 factor compare
CSW01_13240 -0.7 -5.2 N-succinylglutamate 5-semialdehyde dehydrogenase compare
CSW01_11730 -0.7 -1.6 2-dehydropantoate 2-reductase compare
CSW01_02755 -0.7 -1.2 glutamyl-tRNA amidotransferase compare
CSW01_02490 -0.7 -3.8 glutathione synthetase compare
CSW01_04850 -0.7 -3.2 septal ring lytic transglycosylase RlpA compare
CSW01_01425 -0.7 -0.9 phosphoribosylamine--glycine ligase compare
CSW01_15120 -0.7 -2.3 iron(III) ABC transporter permease compare
CSW01_11775 -0.7 -4.9 exodeoxyribonuclease V subunit alpha compare
CSW01_08240 -0.7 -2.0 ATP-binding protein compare
CSW01_05250 -0.7 -4.4 zinc/cadmium/mercury/lead-transporting ATPase compare
CSW01_03050 -0.7 -3.3 cytochrome b compare
CSW01_18635 -0.7 -2.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_15310 -0.7 -2.1 exoribonuclease R compare
CSW01_05555 -0.7 -3.0 oligopeptide ABC transporter permease OppC compare
CSW01_03055 -0.7 -1.7 cytochrome c1 compare
CSW01_00570 -0.7 -2.4 cytochrome c4 compare
CSW01_07200 -0.7 -1.5 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_13245 -0.7 -3.8 arginine N-succinyltransferase compare
CSW01_01430 -0.6 -4.0 Zn(2+)-responsive transcriptional regulator compare
CSW01_00450 -0.6 -1.2 SCP2 domain-containing protein compare
CSW01_00095 -0.6 -1.6 hypothetical protein compare
CSW01_16785 -0.6 -2.2 hypothetical protein compare
CSW01_00065 -0.6 -3.6 DNA replication and repair protein RecF compare
CSW01_01515 -0.6 -1.4 type II 3-dehydroquinate dehydratase compare
CSW01_02265 -0.6 -2.7 arginine repressor compare
CSW01_11945 -0.6 -2.9 cation-binding protein compare
CSW01_01475 -0.6 -3.1 gluconate kinase compare
CSW01_01020 -0.6 -2.3 hypothetical protein compare
CSW01_18725 -0.6 -1.3 TetR/AcrR family transcriptional regulator compare
CSW01_03795 -0.6 -0.8 phosphate ABC transporter ATP-binding protein compare
CSW01_10485 -0.6 -1.1 DUF2788 domain-containing protein compare
CSW01_05545 -0.6 -2.9 peptide ABC transporter substrate-binding protein compare
CSW01_02450 -0.6 -3.7 pyrroline-5-carboxylate reductase compare
CSW01_01045 -0.6 -5.0 DNA helicase RecQ compare
CSW01_02970 -0.6 -3.4 glutamate--cysteine ligase compare
CSW01_03475 -0.6 -2.1 ATP-dependent RNA helicase SrmB compare
CSW01_12665 -0.6 -2.2 RDD family protein compare
CSW01_10400 -0.6 -2.6 zinc ABC transporter substrate-binding protein compare
CSW01_07920 -0.6 -1.8 lipid A modification system glycine carrier protein AlmF compare
CSW01_05065 -0.6 -3.5 N-acetylglucosamine repressor compare
CSW01_12680 -0.6 -3.4 cytosol aminopeptidase compare
CSW01_18570 -0.6 -4.1 glycine C-acetyltransferase compare
CSW01_10420 -0.6 -2.7 succinyl-CoA ligase subunit beta compare
CSW01_05550 -0.6 -3.3 oligopeptide ABC transporter permease OppB compare
CSW01_12240 -0.6 -4.5 single-stranded-DNA-specific exonuclease RecJ compare
CSW01_11710 -0.6 -3.1 transcriptional regulator compare
CSW01_18315 -0.6 -2.0 methyltransferase compare
CSW01_07215 -0.6 -2.3 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_05390 -0.6 -2.7 YciK family oxidoreductase compare
CSW01_11915 -0.6 -2.0 hypothetical protein compare
CSW01_00265 -0.6 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
CSW01_02530 -0.6 -3.5 D-erythrose-4-phosphate dehydrogenase compare
CSW01_06025 -0.6 -3.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_10355 -0.5 -1.9 phosphohistidine phosphatase SixA compare
CSW01_04315 -0.5 -2.8 TCP pilus virulence regulatory protein compare
CSW01_15110 -0.5 -2.0 iron(III) ABC transporter substrate-binding protein compare
CSW01_05275 -0.5 -1.1 hypothetical protein compare
CSW01_09625 -0.5 -0.7 hypothetical protein compare
CSW01_01965 -0.5 -0.5 glucose-6-phosphate isomerase compare
CSW01_05375 -0.5 -3.5 recombination protein RecR compare
CSW01_15115 -0.5 -3.1 iron(III) ABC transporter permease compare
CSW01_11755 -0.5 -3.5 murein transglycosylase compare
CSW01_11125 -0.5 -2.7 hypothetical protein compare
CSW01_07205 -0.5 -2.7 copper-translocating P-type ATPase compare
CSW01_13635 -0.5 -4.0 thiol:disulfide interchange protein DsbD compare
CSW01_11785 -0.5 -0.7 exonuclease V subunit gamma compare
CSW01_11780 -0.5 -0.7 exodeoxyribonuclease V subunit beta compare
CSW01_10290 -0.5 -2.2 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_17090 -0.5 -3.2 SPOR domain-containing protein compare
CSW01_00460 -0.5 -2.1 twin-arginine translocase subunit TatA compare
CSW01_19415 -0.5 -1.3 hypothetical protein compare
CSW01_01420 -0.5 -4.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
CSW01_06950 -0.5 -4.0 ATP-dependent RNA helicase HrpA compare
CSW01_16435 -0.5 -1.1 DUF3265 domain-containing protein compare
CSW01_01980 -0.5 -2.9 transcriptional regulator Zur compare
CSW01_11115 -0.5 -1.8 hypothetical protein compare
CSW01_05480 -0.5 -2.6 hypothetical protein compare
CSW01_09620 -0.5 -1.6 trigger factor compare
CSW01_00635 -0.5 -3.8 diaminopimelate decarboxylase compare
CSW01_01525 -0.5 -4.2 3'-5' exonuclease compare
CSW01_11120 -0.5 -1.6 hypothetical protein compare
CSW01_04335 -0.5 -3.3 RDD family protein compare
CSW01_05580 -0.5 -2.3 acetate kinase compare
CSW01_14085 -0.5 -1.1 transcriptional regulator compare
CSW01_00955 -0.5 -3.1 hypothetical protein compare
CSW01_19160 -0.5 -2.3 hypothetical protein compare
CSW01_06460 -0.5 -2.9 MarR family transcriptional regulator compare
CSW01_06280 -0.5 -2.8 succinylglutamate desuccinylase compare
CSW01_10575 -0.5 -3.1 endonuclease SmrB compare
CSW01_17855 -0.5 -3.5 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_05565 -0.5 -3.2 ABC transporter ATP-binding protein compare
CSW01_19455 -0.5 -2.7 AraC family transcriptional regulator compare
CSW01_09145 -0.5 -2.3 PTS fructose transporter subunit IIA compare
CSW01_13620 -0.5 -3.7 aspartate ammonia-lyase compare
CSW01_19600 -0.5 -2.1 hypothetical protein compare
CSW01_05530 -0.5 -3.6 two-component system response regulator compare
CSW01_06920 -0.5 -1.4 DUF2760 domain-containing protein compare
CSW01_16195 -0.5 -0.9 DUF645 domain-containing protein compare
CSW01_10415 -0.5 -2.4 succinate--CoA ligase subunit alpha compare
CSW01_06530 -0.5 -2.9 aromatic amino acid aminotransferase compare
CSW01_19450 -0.5 -3.7 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
CSW01_01245 -0.5 -1.6 lipopolysaccharide heptosyltransferase II compare
CSW01_03335 -0.5 -2.2 ribosome assembly RNA-binding protein YhbY compare
CSW01_09045 -0.5 -2.3 hypothetical protein compare
CSW01_02205 -0.5 -2.9 ribonuclease E/G compare
CSW01_03045 -0.5 -1.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_09465 -0.5 -2.9 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_13960 -0.5 -3.5 potassium uptake protein TrkH compare
CSW01_05020 -0.5 -1.7 regulatory protein ToxS compare
CSW01_13340 -0.5 -3.4 DNA-binding transcriptional regulator OxyR compare
CSW01_04465 -0.5 -1.6 hypothetical protein compare
CSW01_09315 -0.5 -2.5 exodeoxyribonuclease III compare
CSW01_12360 -0.4 -1.9 TIGR00153 family protein compare
CSW01_11255 -0.4 -2.2 flagellar biosynthesis protein FlgP compare
CSW01_00085 -0.4 -1.2 heat-shock protein Hsp20 compare
CSW01_01490 -0.4 -1.4 Fis family transcriptional regulator compare
CSW01_15870 -0.4 -1.1 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_19175 -0.4 -1.9 hypothetical protein compare
CSW01_04845 -0.4 -2.0 D-alanyl-D-alanine carboxypeptidase compare
CSW01_04320 -0.4 -3.0 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_03950 -0.4 -1.5 hypothetical protein compare
CSW01_06435 -0.4 -2.0 C4-dicarboxylate ABC transporter compare
CSW01_17075 -0.4 -1.6 stress response translation initiation inhibitor YciH compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_aerobic experiments

For lb_aerobic LB across organisms