Experiment set5IT089 for Shewanella loihica PV-4

Compare to:

Motility M3

200 most detrimental genes:

  gene name fitness t score description  
Shew_2808 +12.1 77.7 type IV pilus assembly PilZ (RefSeq) conserved
Shew_2110 +9.4 45.3 hypothetical protein (RefSeq) compare
Shew_2754 +6.7 11.4 diguanylate cyclase (RefSeq) compare
Shew_1339 +6.6 9.2 hypothetical protein (RefSeq) compare
Shew_1338 +6.3 20.2 hypothetical protein (RefSeq) compare
Shew_1337 +5.9 26.1 hypothetical protein (RefSeq) compare
Shew_3381 +5.6 24.7 diguanylate cyclase (RefSeq) conserved
Shew_3380 +5.4 22.3 TatD-related deoxyribonuclease (RefSeq) conserved
Shew_3379 +4.8 10.1 hypothetical protein (RefSeq) conserved
Shew_1397 +4.7 9.8 amino acid/peptide transporter (RefSeq) compare
Shew_3683 +4.3 20.5 extracellular solute-binding protein (RefSeq) compare
Shew_1681 +4.2 1.9 diguanylate cyclase with PAS/PAC sensor (RefSeq) compare
Shew_3742 +3.4 17.1 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Shew_2753 +3.3 7.5 TPR repeat-containing protein (RefSeq) compare
Shew_2988 +3.3 12.8 putative signal transduction protein (RefSeq) compare
Shew_0400 +2.8 8.1 methylation site containing protein (RefSeq) compare
Shew_2977 +2.7 16.5 diguanylate cyclase (RefSeq) conserved
Shew_0401 +2.7 6.6 MSHA biogenesis protein MshP (RefSeq) compare
Shew_0402 +2.7 14.9 MSHA biogenesis protein MshQ (RefSeq) compare
Shew_0387 +2.7 18.7 MSHA biogenesis protein MshJ (RefSeq) compare
Shew_0386 +2.6 17.0 fimbrial assembly family protein (RefSeq) compare
Shew_0389 +2.6 15.7 pilus (MSHA type) biogenesis protein MshL (RefSeq) compare
Shew_0392 +2.6 13.1 type II secretion system protein E (RefSeq) compare
Shew_3682 +2.6 11.4 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1593 +2.5 3.9 ribonuclease (RefSeq) compare
Shew_0399 +2.5 13.4 methylation site containing protein (RefSeq) compare
Shew_3612 +2.5 3.0 general secretion pathway protein K (RefSeq) compare
Shew_0385 +2.5 13.4 biogenesis protein MshI (RefSeq) compare
Shew_0393 +2.4 13.3 type II secretion system protein (RefSeq) compare
Shew_0388 +2.4 9.4 MSHA biogenesis protein MshK (RefSeq) compare
Shew_3610 +2.4 2.5 general secretion pathway M protein (RefSeq) compare
Shew_0566 +2.4 3.3 RNA chaperone Hfq (RefSeq) compare
Shew_0390 +2.3 2.6 MSHA biogenesis protein MshM (RefSeq) compare
Shew_0391 +2.3 15.2 TPR repeat-containing protein (RefSeq) compare
Shew_3063 +2.3 2.6 glycine cleavage system protein H (RefSeq) compare
Shew_0398 +2.1 6.1 MSHA pilin protein MshC (RefSeq) compare
Shew_0453 +2.1 3.1 response regulator receiver protein (RefSeq) compare
Shew_R0049 +2.0 8.6 tRNA-Pro (RefSeq) compare
Shew_0575 +2.0 2.4 glutamine amidotransferase of anthranilate synthase (RefSeq) compare
Shew_2502 +2.0 6.1 ABC transporter-related protein (RefSeq) compare
Shew_1606 +2.0 1.6 hypothetical protein (RefSeq) compare
Shew_0972 +1.9 1.4 glutamate--ammonia ligase (RefSeq) compare
Shew_1095 +1.9 2.4 ArsR family transcriptional regulator (RefSeq) compare
Shew_1726 +1.9 3.3 LuxR family transcriptional regulator (RefSeq) compare
Shew_0495 +1.8 1.7 hypothetical protein (RefSeq) compare
Shew_1423 +1.8 1.6 sulfate adenylyltransferase, large subunit (RefSeq) compare
Shew_1730 +1.8 2.0 hypothetical protein (RefSeq) compare
Shew_0722 +1.7 1.6 hypothetical protein (RefSeq) compare
Shew_1163 +1.7 1.9 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_3051 +1.7 1.3 cupin 2 domain-containing protein (RefSeq) compare
Shew_3432 pdhR +1.7 3.4 transcriptional regulator PdhR (RefSeq) compare
Shew_2022 +1.6 1.3 recombination factor protein RarA (RefSeq) compare
Shew_0396 +1.6 2.7 methylation site containing protein (RefSeq) compare
Shew_3681 +1.5 5.7 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2388 +1.5 1.4 formate/nitrite transporter (RefSeq) compare
Shew_2554 +1.5 1.5 outer membrane protein W (RefSeq) compare
Shew_1080 +1.5 1.2 homoserine kinase (RefSeq) compare
Shew_1994 +1.4 1.5 universal stress protein UspE (RefSeq) compare
Shew_1082 +1.4 1.8 hypothetical protein (RefSeq) compare
Shew_1773 +1.4 2.0 LysR family transcriptional regulator (RefSeq) compare
Shew_1646 +1.4 1.3 beta-lactamase domain-containing protein (RefSeq) compare
Shew_1479 +1.4 1.6 deoxyribodipyrimidine photo-lyase (RefSeq) compare
Shew_1609 +1.4 1.4 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) compare
Shew_1035 +1.3 0.8 LysR family transcriptional regulator (RefSeq) compare
Shew_0695 +1.3 1.8 hypothetical protein (RefSeq) compare
Shew_1883 +1.3 0.9 hypothetical protein (RefSeq) compare
Shew_0846 +1.3 1.7 nitrogen regulatory protein P-II (RefSeq) compare
Shew_3292 +1.3 1.6 hypothetical protein (RefSeq) compare
Shew_3430 +1.3 1.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1500 +1.3 0.9 signal transduction protein (RefSeq) compare
Shew_1490 +1.3 0.7 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) compare
Shew_1792 +1.3 1.3 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_1007 +1.3 1.0 major outer membrane lipoprotein, putative (RefSeq) compare
Shew_3631 +1.3 2.6 hypothetical protein (RefSeq) compare
Shew_0031 +1.2 3.3 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_1861 +1.2 2.7 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin (RefSeq) compare
Shew_2406 +1.2 1.4 AraC family transcriptional regulator (RefSeq) compare
Shew_1801 +1.2 2.2 putative solute/DNA competence effector (RefSeq) compare
Shew_1388 +1.2 1.4 hypothetical protein (RefSeq) compare
Shew_3374 +1.2 2.0 hypothetical protein (RefSeq) compare
Shew_1465 +1.2 1.1 hypothetical protein (RefSeq) compare
Shew_2132 +1.2 3.1 hypothetical protein (RefSeq) compare
Shew_1429 +1.2 2.2 hypothetical protein (RefSeq) compare
Shew_1236 +1.2 1.9 OsmC family protein (RefSeq) compare
Shew_0775 +1.2 3.1 TetR family transcriptional regulator (RefSeq) compare
Shew_1125 +1.2 1.9 hypothetical protein (RefSeq) compare
Shew_1463 +1.2 1.5 AraC family transcriptional regulator (RefSeq) compare
Shew_0022 +1.2 3.5 TrkH family potassium uptake protein (RefSeq) compare
Shew_3295 +1.2 3.1 AFG1 family ATPase (RefSeq) compare
Shew_0897 +1.2 1.2 hypothetical protein (RefSeq) compare
Shew_2373 +1.2 1.3 DSBA oxidoreductase (RefSeq) compare
Shew_0564 +1.2 2.3 DNA mismatch repair protein MutL (RefSeq) compare
Shew_3427 +1.2 4.3 patatin (RefSeq) compare
Shew_3150 +1.2 1.1 antibiotic biosynthesis monooxygenase (RefSeq) compare
Shew_2153 +1.1 1.3 LysR family transcriptional regulator (RefSeq) compare
Shew_2307 +1.1 2.0 hypothetical protein (RefSeq) compare
Shew_2469 +1.1 0.9 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0452 +1.1 2.6 diguanylate cyclase (RefSeq) compare
Shew_2181 +1.1 1.6 hypothetical protein (RefSeq) compare
Shew_3275 +1.1 1.6 CheC domain-containing protein (RefSeq) compare
Shew_0430 +1.1 2.0 histone family protein DNA-binding protein (RefSeq) compare
Shew_2402 +1.1 0.7 ABC transporter-related protein (RefSeq) compare
Shew_1313 +1.1 1.9 TetR family transcriptional regulator (RefSeq) compare
Shew_0395 +1.1 1.6 methylation site containing protein (RefSeq) compare
Shew_0459 +1.1 2.0 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_2598 +1.1 1.3 hypothetical protein (RefSeq) compare
Shew_1562 +1.1 1.0 pseudouridylate synthase (RefSeq) compare
Shew_3598 +1.1 0.7 AsnC family transcriptional regulator (RefSeq) compare
Shew_0799 +1.1 1.4 MarR family transcriptional regulator (RefSeq) compare
Shew_1517 +1.1 1.5 putative adenylyl cyclase CyaB (RefSeq) compare
Shew_2349 +1.1 3.3 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1473 +1.1 2.0 hypothetical protein (RefSeq) compare
Shew_2458 +1.1 0.8 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_3046 +1.1 2.6 carboxymuconolactone decarboxylase (RefSeq) compare
Shew_0932 +1.0 1.2 radical SAM domain-containing protein (RefSeq) compare
Shew_2241 +1.0 1.5 hypothetical protein (RefSeq) compare
Shew_3541 +1.0 4.5 thioesterase domain-containing protein (RefSeq) compare
Shew_1124 trmB +1.0 1.5 tRNA (guanine-N(7))-methyltransferase (RefSeq) compare
Shew_1530 +1.0 1.2 porin (RefSeq) compare
Shew_2437 +1.0 0.8 hypothetical protein (RefSeq) compare
Shew_0032 +1.0 4.2 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) compare
Shew_2693 +1.0 2.2 hypothetical protein (RefSeq) compare
Shew_1426 +1.0 1.7 hypothetical protein (RefSeq) compare
Shew_0854 +1.0 2.4 hypothetical protein (RefSeq) compare
Shew_3209 +1.0 1.3 nitrate reductase cytochrome c-type subunit (NapB) (RefSeq) compare
Shew_1310 +0.9 2.5 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_2821 +0.9 1.2 lipoprotein NlpI (RefSeq) compare
Shew_3339 +0.9 1.2 glutathione-dependent formaldehyde-activating, GFA (RefSeq) compare
Shew_0229 +0.9 2.8 extracellular solute-binding protein (RefSeq) compare
Shew_0215 +0.9 3.1 sporulation domain-containing protein (RefSeq) compare
Shew_1961 +0.9 1.3 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_1281 +0.9 1.3 hypothetical protein (RefSeq) compare
Shew_2282 +0.9 0.7 Fis family transcriptional regulator (RefSeq) compare
Shew_3786 +0.9 0.6 hypothetical protein (RefSeq) compare
Shew_1791 +0.9 2.1 two component transcriptional regulator (RefSeq) compare
Shew_3163 +0.9 2.6 diguanylate cyclase with PAS/PAC sensor (RefSeq) compare
Shew_1461 +0.9 1.6 zinc carboxypeptidase-related protein (RefSeq) compare
Shew_3673 +0.9 2.1 hypothetical protein (RefSeq) compare
Shew_1481 +0.9 1.4 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2641 +0.9 3.3 PTS system, glucose-like IIB subunint (RefSeq) compare
Shew_3247 +0.9 0.5 hypothetical protein (RefSeq) compare
Shew_2384 +0.9 1.5 O-methyltransferase family protein (RefSeq) compare
Shew_0204 +0.9 2.7 ornithine carbamoyltransferase (RefSeq) compare
Shew_1454 +0.9 2.4 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3122 +0.9 0.6 PepSY-associated TM helix domain-containing protein (RefSeq) compare
Shew_2861 +0.9 2.4 aminoglycoside phosphotransferase (RefSeq) compare
Shew_2158 +0.9 1.5 gamma-glutamyltransferase (RefSeq) compare
Shew_2918 +0.9 0.6 hypothetical protein (RefSeq) compare
Shew_1675 +0.9 1.9 peptidase S9 prolyl oligopeptidase (RefSeq) compare
Shew_1678 +0.9 1.1 hypothetical protein (RefSeq) compare
Shew_2953 +0.8 3.3 diguanylate cyclase (RefSeq) compare
Shew_2398 +0.8 1.1 hypothetical protein (RefSeq) compare
Shew_3562 +0.8 2.5 LysR family transcriptional regulator (RefSeq) compare
Shew_2061 +0.8 1.0 radical SAM domain-containing protein (RefSeq) compare
Shew_2188 +0.8 2.9 long-chain-fatty-acid--CoA ligase (RefSeq) compare
Shew_3570 +0.8 2.8 two component transcriptional regulator (RefSeq) compare
Shew_3694 +0.8 2.2 ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq) compare
Shew_3364 +0.8 1.3 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Shew_0306 +0.8 5.2 diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq) compare
Shew_2435 +0.8 1.4 sodium/proline symporter (RefSeq) compare
Shew_0640 +0.8 0.8 TPR repeat-containing protein (RefSeq) compare
Shew_1845 +0.8 1.1 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_2372 +0.8 0.8 small component of L-lactate and L-malate uptake system (from data) compare
Shew_3080 +0.8 1.3 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_0352 +0.8 2.1 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_2118 +0.8 3.1 hypothetical protein (RefSeq) compare
Shew_3703 +0.8 2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) compare
Shew_1443 +0.8 2.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3444 +0.8 1.3 mutator MutT protein (RefSeq) compare
Shew_2745 +0.8 2.0 hypothetical protein (RefSeq) compare
Shew_0301 +0.8 0.6 AsnC family transcriptional regulator (RefSeq) compare
Shew_3620 +0.8 2.5 general secretion pathway protein C (RefSeq) compare
Shew_0661 +0.8 0.7 hypothetical protein (RefSeq) compare
Shew_2415 +0.8 0.8 major facilitator transporter (RefSeq) compare
Shew_2536 +0.8 1.0 putative thiol-disulphide oxidoreductase DCC (RefSeq) compare
Shew_3313 +0.8 0.9 PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) compare
Shew_3179 +0.8 1.5 hypothetical protein (RefSeq) compare
Shew_0484 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_2041 +0.8 3.0 hypothetical protein (RefSeq) compare
Shew_3184 +0.8 2.1 hypothetical protein (RefSeq) compare
Shew_3738 +0.8 3.6 sun protein (RefSeq) compare
Shew_1272 +0.8 2.1 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) compare
Shew_2407 +0.8 1.5 putative periplasmic protease (RefSeq) compare
Shew_1759 +0.8 1.7 hydrogenase accessory protein HypB (RefSeq) compare
Shew_2161 +0.8 2.9 peptidyl-dipeptidase Dcp (RefSeq) compare
Shew_2121 +0.8 1.5 diguanylate cyclase (RefSeq) compare
Shew_1336 +0.8 1.9 hypothetical protein (RefSeq) compare
Shew_3833 +0.8 1.5 no description compare
Shew_0420 +0.8 2.9 major facilitator transporter (RefSeq) compare
Shew_2998 +0.8 2.5 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) compare
Shew_2151 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_0833 +0.7 0.5 hypoxanthine-guanine phosphoribosyltransferase (RefSeq) compare
Shew_1244 +0.7 0.6 OsmC family protein (RefSeq) compare
Shew_2080 +0.7 3.7 diguanylate cyclase (RefSeq) compare
Shew_3699 +0.7 1.6 glycosyl transferase family protein (RefSeq) compare
Shew_1631 +0.7 1.0 hypothetical protein (RefSeq) compare
Shew_1418 +0.7 2.4 UTP-glucose-1-phosphate uridylyltransferase GalU (RefSeq) compare
Shew_3619 +0.7 1.9 general secretion pathway protein D (RefSeq) compare
Shew_0981 +0.7 1.0 response regulator receiver protein (RefSeq) compare
Shew_2350 +0.7 0.8 2OG-Fe(II) oxygenase (RefSeq) compare


Specific Phenotypes

For 15 genes in this experiment

For motility Agar in Shewanella loihica PV-4

For motility Agar across organisms