Experiment set5IT088 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Magnesium chloride hexahydrate 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -4.9 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_2934 -4.5 -4.2 lipoprotein, putative compare
Pf6N2E2_3617 -4.1 -4.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4974 -3.9 -8.0 DedA protein compare
Pf6N2E2_5068 -3.6 -11.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_1087 -3.6 -8.5 Iron siderophore sensor protein compare
Pf6N2E2_5069 -3.5 -5.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5342 -3.5 -3.4 21 kDa hemolysin precursor compare
Pf6N2E2_2853 -3.4 -11.5 Iron-regulated protein A precursor compare
Pf6N2E2_5705 -3.3 -3.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2756 -3.3 -7.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5178 -3.1 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5527 -3.1 -2.9 Cold shock protein CspC compare
Pf6N2E2_3285 -3.0 -4.2 Rod shape-determining protein MreD compare
Pf6N2E2_5544 -3.0 -8.0 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1634 -2.9 -5.5 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2180 -2.9 -3.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3160 -2.8 -8.1 Multicopper oxidase compare
Pf6N2E2_3834 -2.8 -7.4 Lipoprotein NlpD compare
Pf6N2E2_1632 -2.7 -4.8 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_4159 -2.7 -4.1 Cytochrome c4 compare
Pf6N2E2_5006 -2.7 -7.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4187 -2.6 -4.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4585 -2.6 -11.6 Cell division protein FtsX compare
Pf6N2E2_1691 -2.5 -2.5 hypothetical protein compare
Pf6N2E2_3062 -2.5 -4.7 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5245 -2.5 -7.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_178 -2.5 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1635 -2.5 -5.2 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_1633 -2.4 -4.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_4057 -2.4 -1.1 lipoprotein, putative compare
Pf6N2E2_2675 -2.4 -1.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_773 -2.3 -5.7 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_3642 -2.3 -4.7 lipoprotein, putative compare
Pf6N2E2_3753 -2.2 -12.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2646 -2.2 -2.0 FIG00953416: hypothetical protein compare
Pf6N2E2_3833 -2.2 -4.6 hypothetical protein compare
Pf6N2E2_1162 -2.1 -1.9 Transmembrane amino acid efflux protein compare
Pf6N2E2_2217 -2.0 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2507 -2.0 -5.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4162 -2.0 -2.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4077 -2.0 -2.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5618 -2.0 -8.3 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf6N2E2_5536 -1.9 -1.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3270 -1.9 -3.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3659 -1.9 -4.7 Protein fixF compare
Pf6N2E2_3521 -1.9 -7.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_5794 -1.9 -2.5 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2823 -1.9 -4.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2825 -1.8 -3.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2574 -1.8 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_1522 -1.8 -3.1 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_3243 -1.8 -10.6 FIG067310: hypothetical protein compare
Pf6N2E2_5252 -1.8 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2605 -1.8 -4.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4611 -1.8 -3.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1339 -1.7 -2.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5316 -1.7 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3033 -1.7 -1.9 hypothetical protein compare
Pf6N2E2_5508 -1.7 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2088 -1.7 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4046 -1.7 -10.7 FIG00953482: hypothetical protein compare
Pf6N2E2_2824 -1.7 -7.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2189 -1.7 -4.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3658 -1.7 -5.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5128 -1.7 -3.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_3661 -1.6 -3.9 hypothetical protein compare
Pf6N2E2_4584 -1.6 -2.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_451 -1.6 -3.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3303 -1.6 -3.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3261 -1.6 -4.0 hypothetical protein compare
Pf6N2E2_5956 -1.6 -5.3 FIG004453: protein YceG like compare
Pf6N2E2_2425 -1.6 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5261 -1.6 -1.3 FIG00956983: hypothetical protein compare
Pf6N2E2_5255 -1.6 -6.6 Outer membrane stress sensor protease DegS compare
Pf6N2E2_1606 -1.6 -4.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2274 -1.5 -4.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3761 -1.5 -10.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5780 -1.5 -6.6 Periplasmic protease compare
Pf6N2E2_4838 -1.5 -5.7 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_4969 -1.5 -1.2 hypothetical protein compare
Pf6N2E2_2318 -1.5 -5.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5338 -1.5 -5.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_971 -1.5 -2.3 hypothetical protein compare
Pf6N2E2_2218 -1.5 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4352 -1.5 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3612 -1.5 -2.2 HflK protein compare
Pf6N2E2_2285 -1.4 -1.2 FIG00954079: hypothetical protein compare
Pf6N2E2_1886 -1.4 -2.1 hypothetical protein compare
Pf6N2E2_4045 -1.4 -3.3 FIG00953248: hypothetical protein compare
Pf6N2E2_4478 -1.4 -4.8 FIG019278: hypothetical protein compare
Pf6N2E2_2440 -1.4 -1.4 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2714 -1.4 -2.1 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1636 -1.4 -6.2 Ferrichrome-iron receptor compare
Pf6N2E2_4477 -1.4 -2.1 Z-ring-associated protein ZapA compare
Pf6N2E2_3039 -1.4 -3.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4908 -1.4 -5.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5155 -1.4 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2513 -1.4 -3.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3835 -1.3 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5520 -1.3 -4.2 Sensory box histidine kinase compare
Pf6N2E2_4068 -1.3 -6.9 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_3081 -1.3 -3.6 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_156 -1.3 -0.9 Carbon storage regulator compare
Pf6N2E2_2200 -1.3 -1.1 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_2340 -1.3 -3.4 Transcriptional regulator, GntR family compare
Pf6N2E2_4044 -1.3 -2.8 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_2752 -1.3 -5.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2384 -1.3 -3.1 CmpX compare
Pf6N2E2_4451 -1.3 -3.9 FIG139438: lipoprotein B compare
Pf6N2E2_1605 -1.3 -4.8 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_4993 -1.3 -2.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_1753 -1.2 -4.0 FIG00643128: hypothetical protein compare
Pf6N2E2_5337 -1.2 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3373 -1.2 -1.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2465 -1.2 -4.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5339 -1.2 -4.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2971 -1.2 -7.9 AmpG permease compare
Pf6N2E2_98 -1.2 -1.1 putative transmembrane protein compare
Pf6N2E2_70 -1.2 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4889 -1.2 -3.9 Putative transport protein compare
Pf6N2E2_5671 -1.2 -2.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5640 -1.2 -1.6 FIG00955597: hypothetical protein compare
Pf6N2E2_5609 -1.2 -4.2 DNA-binding response regulator ColR compare
Pf6N2E2_1287 -1.2 -2.6 Mobile element protein compare
Pf6N2E2_4803 -1.2 -1.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4153 -1.2 -1.1 Sensory box histidine kinase compare
Pf6N2E2_1248 -1.2 -1.8 MutT/nudix family protein compare
Pf6N2E2_1031 -1.2 -2.5 Alkanesulfonates transport system permease protein compare
Pf6N2E2_2013 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_1136 -1.1 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1545 -1.1 -3.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4362 -1.1 -2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4273 -1.1 -4.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2753 -1.1 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_75 -1.1 -2.6 Colicin V production protein compare
Pf6N2E2_500 -1.1 -2.0 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_2473 -1.1 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_2423 -1.1 -4.3 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3221 -1.1 -2.4 FIG00352444: hypothetical protein compare
Pf6N2E2_5001 -1.1 -1.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5171 -1.1 -7.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3040 -1.1 -4.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_5172 -1.1 -2.5 FOG: TPR repeat compare
Pf6N2E2_4392 -1.1 -1.2 Translation initiation inhibitor compare
Pf6N2E2_955 -1.1 -1.8 FIG00953508: hypothetical protein compare
Pf6N2E2_1797 -1.1 -2.0 Transcriptional regulator compare
Pf6N2E2_1876 -1.1 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_4372 -1.1 -3.1 FIG00460773: hypothetical protein compare
Pf6N2E2_3351 -1.1 -2.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3687 -1.1 -2.6 FIG00959437: hypothetical protein compare
Pf6N2E2_2674 -1.0 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_2526 -1.0 -3.7 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_2350 -1.0 -2.5 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_927 -1.0 -1.8 (AJ250023) putative polyketide synthase compare
Pf6N2E2_2064 -1.0 -2.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_234 -1.0 -1.3 FIG00454312: hypothetical protein compare
Pf6N2E2_3472 -1.0 -2.1 Probable short-chain dehydrogenase compare
Pf6N2E2_5392 -1.0 -2.4 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_78 -1.0 -3.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1043 -1.0 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2788 -1.0 -1.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_1128 -1.0 -1.7 Two-component response regulator compare
Pf6N2E2_1153 -1.0 -2.4 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_1932 -1.0 -2.9 Transcriptional regulator, IclR family compare
Pf6N2E2_4773 -1.0 -0.8 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3589 -1.0 -1.7 Lysine decarboxylase family compare
Pf6N2E2_4809 -1.0 -6.5 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_3663 -1.0 -3.8 Glycosyl transferase compare
Pf6N2E2_809 -1.0 -3.3 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_3557 -1.0 -2.1 Chaperone-modulator protein CbpM compare
Pf6N2E2_3151 -1.0 -2.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2311 -1.0 -3.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_906 -1.0 -1.9 ISPpu14, transposase Orf2 compare
Pf6N2E2_2281 -1.0 -1.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3841 -1.0 -3.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2708 -1.0 -3.0 Lactam utilization protein LamB compare
Pf6N2E2_4543 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_5156 -1.0 -1.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_648 -1.0 -1.3 General secretion pathway protein K compare
Pf6N2E2_4721 -1.0 -2.1 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_2442 -1.0 -5.7 sensor histidine kinase/response regulator compare
Pf6N2E2_2039 -0.9 -2.7 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_4659 -0.9 -2.6 Lipoprotein, putative compare
Pf6N2E2_1566 -0.9 -2.5 FIG00960770: hypothetical protein compare
Pf6N2E2_2755 -0.9 -1.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5242 -0.9 -1.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2139 -0.9 -1.6 Paraquat-inducible protein A compare
Pf6N2E2_893 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_2586 -0.9 -1.0 Hpt domain protein compare
Pf6N2E2_2459 -0.9 -1.1 Organic hydroperoxide resistance protein compare
Pf6N2E2_2152 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_2363 -0.9 -2.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_180 -0.9 -2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_5103 -0.9 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_1665 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_638 -0.9 -2.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5345 -0.9 -3.7 LppC putative lipoprotein compare
Pf6N2E2_1095 -0.9 -1.5 Opine oxidase subunit C compare


Specific Phenotypes

For 6 genes in this experiment

For stress Magnesium chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Magnesium chloride hexahydrate across organisms