Experiment set5IT088 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_Aerobic_18HR_ZN18A

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -4.3 -11.4 outer membrane protein TolC compare
CSW01_11535 -4.0 -6.1 thiamine-phosphate kinase compare
CSW01_02890 -3.9 -11.3 aspartate kinase compare
CSW01_03785 -2.8 -2.6 phosphate ABC transporter permease compare
CSW01_09240 -2.4 -5.4 Holliday junction branch migration DNA helicase RuvB compare
CSW01_01015 -2.4 -14.2 DNA helicase II compare
CSW01_01295 -2.4 -1.6 ABC transporter permease compare
CSW01_05575 -2.2 -4.7 phosphate acetyltransferase compare
CSW01_05630 -2.2 -11.5 replication-associated recombination protein A compare
CSW01_01300 -2.1 -4.3 sugar ABC transporter compare
CSW01_07190 -2.0 -5.7 transcriptional regulator FNR compare
CSW01_05195 -1.9 -5.5 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_03790 -1.9 -4.2 phosphate ABC transporter, permease protein PstA compare
CSW01_18350 -1.8 -1.5 cell division protein DedD compare
CSW01_13805 -1.8 -3.5 Hsp33 family molecular chaperone HslO compare
CSW01_11730 -1.8 -3.0 2-dehydropantoate 2-reductase compare
CSW01_09245 -1.8 -4.6 Holliday junction branch migration protein RuvA compare
CSW01_13420 -1.7 -3.2 elongation factor P--(R)-beta-lysine ligase compare
CSW01_02875 -1.7 -5.7 DNA recombination/repair protein RecA compare
CSW01_10245 -1.6 -5.1 ABC transporter compare
CSW01_12250 -1.6 -6.2 site-specific tyrosine recombinase XerD compare
CSW01_00650 -1.6 -7.3 tyrosine recombinase XerC compare
CSW01_01425 -1.5 -1.4 phosphoribosylamine--glycine ligase compare
CSW01_01265 -1.5 -2.4 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_03795 -1.4 -1.3 phosphate ABC transporter ATP-binding protein compare
CSW01_12815 -1.3 -7.0 RNA polymerase sigma-54 factor compare
CSW01_01845 -1.3 -7.8 protease modulator HflK compare
CSW01_15870 -1.3 -2.3 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_08705 -1.3 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_09365 -1.3 -4.7 pyruvate formate lyase 1-activating protein compare
CSW01_05340 -1.3 -6.6 LysR family transcriptional regulator compare
CSW01_13285 -1.3 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_09350 -1.3 -9.0 formate C-acetyltransferase compare
CSW01_14910 -1.3 -2.2 cold-shock protein compare
CSW01_04930 -1.3 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_09525 -1.2 -0.8 DNA translocase FtsK compare
CSW01_10190 -1.2 -4.3 nucleoid-associated protein compare
CSW01_03410 -1.2 -2.2 polyribonucleotide nucleotidyltransferase compare
CSW01_17855 -1.2 -7.9 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_00850 -1.2 -9.8 multidrug resistance protein compare
CSW01_12770 -1.2 -6.6 ABC transporter permease compare
CSW01_02970 -1.2 -5.2 glutamate--cysteine ligase compare
CSW01_01850 -1.1 -4.3 protease modulator HflC compare
CSW01_10390 -1.1 -2.3 ferrous iron transport protein A compare
CSW01_16435 -1.1 -1.7 DUF3265 domain-containing protein compare
CSW01_04390 -1.1 -1.4 outer membrane protein assembly factor BamE compare
CSW01_12760 -1.1 -3.2 phospholipid-binding protein MlaC compare
CSW01_08620 -1.1 -7.1 chromosome partition protein MukB compare
CSW01_14055 -1.1 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_00855 -1.1 -7.8 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_04570 -1.0 -3.3 exodeoxyribonuclease 7 small subunit compare
CSW01_02755 -1.0 -1.5 glutamyl-tRNA amidotransferase compare
CSW01_10165 -1.0 -7.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_13440 -1.0 -3.6 fumarate reductase subunit D compare
CSW01_12765 -1.0 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
CSW01_01245 -1.0 -3.1 lipopolysaccharide heptosyltransferase II compare
CSW01_03025 -1.0 -4.4 hypothetical protein compare
CSW01_05580 -1.0 -4.4 acetate kinase compare
CSW01_04850 -1.0 -4.4 septal ring lytic transglycosylase RlpA compare
CSW01_16325 -1.0 -1.6 hypothetical protein compare
CSW01_11690 -1.0 -6.7 hypothetical protein compare
CSW01_04650 -1.0 -1.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_09955 -0.9 -4.1 L-asparaginase 1 compare
CSW01_08240 -0.9 -2.1 ATP-binding protein compare
CSW01_07160 -0.9 -3.9 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_12775 -0.9 -6.0 phospholipid ABC transporter ATP-binding protein MlaF compare
CSW01_10355 -0.9 -2.6 phosphohistidine phosphatase SixA compare
CSW01_03155 -0.9 -4.6 RNA polymerase-binding transcription factor DksA compare
CSW01_02450 -0.9 -5.1 pyrroline-5-carboxylate reductase compare
CSW01_07155 -0.9 -1.9 spermidine/putrescine ABC transporter permease PotB compare
CSW01_16195 -0.9 -1.2 DUF645 domain-containing protein compare
CSW01_07500 -0.9 -1.1 DUF2835 domain-containing protein compare
CSW01_04660 -0.9 -5.8 PTS trehalose transporter subunit IIBC compare
CSW01_05900 -0.9 -2.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
CSW01_13680 -0.8 -6.8 DNA helicase RecG compare
CSW01_13430 -0.8 -6.3 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
CSW01_05370 -0.8 -1.4 YbaB/EbfC family nucleoid-associated protein compare
CSW01_19435 -0.8 -2.4 hypothetical protein compare
CSW01_16785 -0.8 -2.0 hypothetical protein compare
CSW01_12465 -0.8 -2.5 elongation factor 4 compare
CSW01_03330 -0.8 -2.3 transcription elongation factor GreA compare
CSW01_08450 -0.8 -1.2 antimicrobial peptide ABC transporter permease SapB compare
CSW01_03880 -0.8 -0.7 HTH-type transcriptional regulator IscR compare
CSW01_05890 -0.8 -4.6 hypothetical protein compare
CSW01_10385 -0.8 -4.7 Fe(2+) transporter permease subunit FeoB compare
CSW01_08630 -0.8 -3.6 condensin subunit F compare
CSW01_03975 -0.8 -2.3 exodeoxyribonuclease VII large subunit compare
CSW01_09420 -0.8 -1.6 DUF2062 domain-containing protein compare
CSW01_12480 -0.8 -0.6 sigma-E factor negative regulatory protein RseA compare
CSW01_01445 -0.8 -6.4 lysine decarboxylase compare
CSW01_05065 -0.8 -4.3 N-acetylglucosamine repressor compare
CSW01_04285 -0.7 -2.1 toxin coregulated pilus biosynthesis protein R compare
CSW01_14495 -0.7 -2.5 NUDIX hydrolase compare
CSW01_01125 -0.7 -4.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_01440 -0.7 -5.8 lysine:cadaverine antiporter compare
CSW01_08665 -0.7 -1.5 DNA transformation protein compare
CSW01_13410 -0.7 -3.4 protein-export protein SecB compare
CSW01_09620 -0.7 -2.2 trigger factor compare
CSW01_13505 -0.7 -4.4 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
CSW01_13305 -0.7 -1.2 shikimate kinase compare
CSW01_00095 -0.7 -2.1 hypothetical protein compare
CSW01_08590 -0.7 -4.1 hypothetical protein compare
CSW01_08625 -0.7 -3.2 chromosome partition protein MukE compare
CSW01_18775 -0.7 -2.7 hypothetical protein compare
CSW01_13425 -0.7 -6.0 fumarate reductase (quinol) flavoprotein subunit compare
CSW01_00495 -0.7 -0.8 SOS-response transcriptional repressor compare
CSW01_04845 -0.7 -3.2 D-alanyl-D-alanine carboxypeptidase compare
CSW01_01435 -0.7 -5.4 transcriptional regulator CadC compare
CSW01_14125 -0.7 -3.2 1,4-alpha-glucan branching enzyme compare
CSW01_10215 -0.7 -2.5 histone deacetylase compare
CSW01_02085 -0.7 -3.3 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_00560 -0.7 -1.7 DNA polymerase I compare
CSW01_07460 -0.7 -1.1 ribosome modulation factor compare
CSW01_17075 -0.7 -3.3 stress response translation initiation inhibitor YciH compare
CSW01_17780 -0.7 -1.9 hypothetical protein compare
CSW01_04375 -0.7 -1.6 SsrA-binding protein compare
CSW01_09605 -0.7 -3.1 endopeptidase La compare
CSW01_08980 -0.7 -2.4 hypothetical protein compare
CSW01_03075 -0.7 -2.1 phosphoheptose isomerase compare
CSW01_10875 -0.7 -2.1 redox-regulated ATPase YchF compare
CSW01_15005 -0.6 -2.4 HNH endonuclease compare
CSW01_01965 -0.6 -0.6 glucose-6-phosphate isomerase compare
CSW01_09250 -0.6 -0.8 crossover junction endodeoxyribonuclease RuvC compare
CSW01_06585 -0.6 -1.6 fumarate hydratase compare
CSW01_17030 -0.6 -1.5 competence protein ComFB compare
CSW01_12320 -0.6 -1.1 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_02830 -0.6 -3.4 murein hydrolase activator NlpD compare
CSW01_07145 -0.6 -2.1 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_13565 -0.6 -2.9 cell division protein ZapB compare
CSW01_11390 -0.6 -3.9 class I SAM-dependent methyltransferase compare
CSW01_04935 -0.6 -0.6 phosphocarrier protein HPr compare
CSW01_16310 -0.6 -1.0 DUF3709 domain-containing protein compare
CSW01_08515 -0.6 -1.4 trimethylamine N-oxide reductase system protein TorE compare
CSW01_13950 -0.6 -1.1 hypothetical protein compare
CSW01_01190 -0.6 -1.9 glycosyltransferase family 2 protein compare
CSW01_04260 -0.6 -1.8 pilus assembly protein compare
CSW01_00590 -0.6 -4.6 oxygen-independent coproporphyrinogen III oxidase compare
CSW01_00025 -0.6 -0.7 membrane protein insertion efficiency factor YidD compare
CSW01_18420 -0.6 -1.5 hypothetical protein compare
CSW01_07450 -0.6 -2.6 Lon protease family protein compare
CSW01_16085 -0.6 -1.7 hypothetical protein compare
CSW01_19540 -0.6 -3.0 chemotaxis protein CheW compare
CSW01_18630 -0.6 -2.8 6-phosphogluconolactonase compare
CSW01_07750 -0.6 -0.6 hypothetical protein compare
CSW01_11870 -0.6 -3.5 DNA repair protein RadA compare
CSW01_16290 -0.6 -0.8 DUF1289 domain-containing protein compare
CSW01_10400 -0.6 -2.3 zinc ABC transporter substrate-binding protein compare
CSW01_03770 -0.6 -2.4 phosphate ABC transporter substrate-binding protein compare
CSW01_01195 -0.6 -0.5 ADP-heptose--LPS heptosyltransferase I compare
CSW01_08435 -0.6 -2.5 phage shock protein PspA compare
CSW01_02315 -0.6 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_08530 -0.6 -1.4 RNA helicase compare
CSW01_08710 -0.6 -1.7 hypothetical protein compare
CSW01_10565 -0.6 -1.3 hypothetical protein compare
CSW01_16590 -0.6 -0.9 N-acetyltransferase compare
CSW01_14680 -0.6 -0.9 aminotransferase compare
CSW01_08190 -0.5 -4.0 ABC transporter permease compare
CSW01_08565 -0.5 -0.9 hypothetical protein compare
CSW01_12365 -0.5 -1.5 inorganic phosphate transporter compare
CSW01_05380 -0.5 -1.6 YkgJ family cysteine cluster protein compare
CSW01_09590 -0.5 -2.5 competence protein ComEA compare
CSW01_00620 -0.5 -2.8 class I adenylate cyclase compare
CSW01_06420 -0.5 -2.0 DUF2982 domain-containing protein compare
CSW01_08830 -0.5 -1.4 integrase compare
CSW01_10560 -0.5 -1.7 chorismate synthase compare
CSW01_12130 -0.5 -2.6 DUF721 domain-containing protein compare
CSW01_05885 -0.5 -3.1 gonadoliberin III compare
CSW01_04870 -0.5 -0.9 ribosome silencing factor compare
CSW01_14810 -0.5 -1.8 tryptophanase leader peptide compare
CSW01_03915 -0.5 -1.2 Fe-S assembly protein IscX compare
CSW01_01185 -0.5 -2.8 ADP-heptose--LPS heptosyltransferase compare
CSW01_11115 -0.5 -1.1 hypothetical protein compare
CSW01_05090 -0.5 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
CSW01_01490 -0.5 -1.3 Fis family transcriptional regulator compare
CSW01_19600 -0.5 -2.8 hypothetical protein compare
CSW01_07140 -0.5 -1.6 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_15680 -0.5 -0.7 DUF3265 domain-containing protein compare
CSW01_06415 -0.5 -0.9 MBL fold metallo-hydrolase compare
CSW01_03180 -0.5 -4.1 serine protease compare
CSW01_01110 -0.5 -3.3 YicC family protein compare
CSW01_04910 -0.5 -1.3 PhoH family protein compare
CSW01_03985 -0.5 -1.7 GMP synthase (glutamine-hydrolyzing) compare
CSW01_13435 -0.5 -2.6 fumarate reductase subunit C compare
CSW01_11935 -0.5 -2.9 sodium:alanine symporter family protein compare
CSW01_06325 -0.5 -0.8 hypothetical protein compare
CSW01_08560 -0.5 -1.6 acyl-CoA thioester hydrolase YciA compare
CSW01_11725 -0.5 -2.8 hypothetical protein compare
CSW01_14470 -0.5 -2.3 DUF134 domain-containing protein compare
CSW01_11230 -0.5 -1.9 chemotaxis protein methyltransferase 1 compare
CSW01_12680 -0.5 -2.7 cytosol aminopeptidase compare
CSW01_16320 -0.5 -1.9 VOC family protein compare
CSW01_15535 -0.5 -1.5 NUDIX hydrolase compare
CSW01_06315 -0.5 -2.2 DUF3943 domain-containing protein compare
CSW01_09660 -0.5 -1.0 hypothetical protein compare
CSW01_07200 -0.5 -0.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_00465 -0.5 -1.6 twin-arginine translocase subunit TatB compare
CSW01_09935 -0.5 -2.4 hypothetical protein compare
CSW01_09515 -0.5 -2.9 Na+/H+ antiporter NhaB compare
CSW01_05240 -0.5 -1.4 CBS domain-containing protein compare
CSW01_13300 -0.5 -2.2 3-dehydroquinate synthase compare


Specific Phenotypes

For 2 genes in this experiment

For lb_aerobic LB in Vibrio cholerae E7946 ATCC 55056

For lb_aerobic LB across organisms