Experiment set5IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3839 -5.4 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3782 -4.5 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3842 -3.9 -5.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5242 -3.7 -2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2755 -3.6 -2.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3282 -3.5 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_3841 -3.5 -6.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5006 -3.4 -8.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4585 -3.3 -14.9 Cell division protein FtsX compare
Pf6N2E2_3834 -3.0 -7.7 Lipoprotein NlpD compare
Pf6N2E2_156 -3.0 -2.3 Carbon storage regulator compare
Pf6N2E2_5014 -2.9 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5342 -2.9 -3.8 21 kDa hemolysin precursor compare
Pf6N2E2_5001 -2.8 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3461 -2.8 -3.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4153 -2.7 -1.8 Sensory box histidine kinase compare
Pf6N2E2_4187 -2.6 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3617 -2.6 -5.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2274 -2.6 -5.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2825 -2.6 -4.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3253 -2.6 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5069 -2.6 -5.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3460 -2.6 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5150 -2.6 -6.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3252 -2.5 -6.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2278 -2.5 -14.1 Transcription-repair coupling factor compare
Pf6N2E2_2320 -2.5 -2.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2219 -2.5 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3941 -2.5 -4.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4206 -2.5 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4071 -2.5 -5.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3661 -2.4 -5.4 hypothetical protein compare
Pf6N2E2_3783 -2.3 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3521 -2.3 -7.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_5103 -2.3 -2.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2420 -2.2 -2.9 hypothetical protein compare
Pf6N2E2_1087 -2.2 -7.9 Iron siderophore sensor protein compare
Pf6N2E2_5956 -2.2 -5.3 FIG004453: protein YceG like compare
Pf6N2E2_2318 -2.2 -7.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3833 -2.1 -4.1 hypothetical protein compare
Pf6N2E2_3251 -2.1 -8.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2313 -2.1 -3.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3610 -2.1 -5.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5068 -2.1 -9.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3612 -2.1 -3.1 HflK protein compare
Pf6N2E2_1636 -2.1 -7.1 Ferrichrome-iron receptor compare
Pf6N2E2_5338 -2.0 -8.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_6140 -2.0 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5178 -2.0 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5520 -2.0 -6.4 Sensory box histidine kinase compare
Pf6N2E2_4803 -2.0 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2311 -1.9 -6.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1632 -1.9 -4.6 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_4159 -1.9 -4.4 Cytochrome c4 compare
Pf6N2E2_3658 -1.8 -7.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5261 -1.8 -1.6 FIG00956983: hypothetical protein compare
Pf6N2E2_4369 -1.8 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4584 -1.7 -2.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5316 -1.7 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4454 -1.7 -5.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5339 -1.7 -5.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_170 -1.7 -1.7 lipoprotein, putative compare
Pf6N2E2_2507 -1.7 -4.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3271 -1.6 -2.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3373 -1.6 -3.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4928 -1.6 -1.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_3908 -1.6 -6.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_445 -1.6 -5.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5671 -1.6 -3.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3534 -1.6 -3.3 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2127 -1.6 -4.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4451 -1.5 -5.5 FIG139438: lipoprotein B compare
Pf6N2E2_2675 -1.5 -1.4 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2824 -1.5 -7.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2506 -1.5 -8.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5337 -1.5 -4.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2509 -1.5 -2.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4205 -1.5 -3.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2309 -1.5 -2.8 hypothetical protein compare
Pf6N2E2_5027 -1.5 -8.5 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_5312 -1.5 -2.0 FIG00964214: hypothetical protein compare
Pf6N2E2_5567 -1.5 -2.8 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_5160 -1.4 -2.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5825 -1.4 -4.2 FIG00958237: hypothetical protein compare
Pf6N2E2_2310 -1.4 -7.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5571 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_3151 -1.4 -2.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3656 -1.4 -5.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_2552 -1.4 -3.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4046 -1.3 -10.3 FIG00953482: hypothetical protein compare
Pf6N2E2_3663 -1.3 -6.5 Glycosyl transferase compare
Pf6N2E2_451 -1.3 -2.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3331 -1.3 -6.8 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation conserved
Pf6N2E2_5156 -1.3 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_819 -1.3 -2.1 Response regulator compare
Pf6N2E2_434 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_3940 -1.3 -6.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3330 -1.3 -5.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_1056 -1.3 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3243 -1.3 -8.5 FIG067310: hypothetical protein compare
Pf6N2E2_40 -1.3 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5219 -1.3 -5.4 FIG140336: TPR domain protein compare
Pf6N2E2_2261 -1.3 -4.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_5406 -1.3 -2.4 FIG00958224: hypothetical protein compare
Pf6N2E2_5536 -1.3 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2752 -1.2 -5.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3179 -1.2 -2.0 FIG021952: putative membrane protein compare
Pf6N2E2_144 -1.2 -8.9 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2508 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_2823 -1.2 -3.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3786 -1.2 -2.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_4612 -1.2 -3.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3303 -1.2 -3.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5780 -1.2 -5.0 Periplasmic protease compare
Pf6N2E2_193 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_42 -1.2 -2.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_114 -1.2 -1.8 Polysaccharide biosynthesis protein compare
Pf6N2E2_3791 -1.2 -6.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5128 -1.2 -2.9 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5328 -1.2 -3.6 FIG00958649: hypothetical protein compare
Pf6N2E2_2513 -1.2 -2.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5241 -1.2 -2.3 Aminopeptidase N compare
Pf6N2E2_4889 -1.2 -4.5 Putative transport protein compare
Pf6N2E2_5771 -1.2 -5.2 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3260 -1.2 -3.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2756 -1.1 -4.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_723 -1.1 -2.4 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_2574 -1.1 -1.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_2201 -1.1 -2.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_5944 -1.1 -3.8 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_414 -1.1 -2.8 Chemotaxis protein CheD compare
Pf6N2E2_5252 -1.1 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_2195 -1.1 -3.0 cI compare
Pf6N2E2_4556 -1.1 -2.7 FIG00953078: hypothetical protein compare
Pf6N2E2_4417 -1.1 -2.2 Protein of unknown function DUF484 compare
Pf6N2E2_737 -1.1 -0.9 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3204 -1.1 -2.4 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_145 -1.1 -3.9 putative exported protein compare
Pf6N2E2_4611 -1.1 -2.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1082 -1.1 -2.1 CopG protein compare
Pf6N2E2_2822 -1.1 -4.6 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_1085 -1.1 -2.2 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2447 -1.1 -5.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4044 -1.1 -3.2 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_3332 -1.1 -4.4 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) conserved
Pf6N2E2_4273 -1.1 -6.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4204 -1.1 -1.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3659 -1.0 -3.9 Protein fixF compare
Pf6N2E2_1177 -1.0 -3.0 putative exported protein compare
Pf6N2E2_2402 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_4372 -1.0 -4.0 FIG00460773: hypothetical protein compare
Pf6N2E2_5527 -1.0 -1.8 Cold shock protein CspC compare
Pf6N2E2_2827 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3792 -1.0 -3.4 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5584 -1.0 -1.3 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2 -1.0 -2.3 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_2375 -1.0 -1.6 Response regulator NasT compare
Pf6N2E2_5111 -1.0 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4045 -1.0 -2.6 FIG00953248: hypothetical protein compare
Pf6N2E2_3333 -1.0 -4.0 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf6N2E2_5842 -1.0 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_1404 -1.0 -1.5 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1734 -1.0 -3.7 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf6N2E2_3607 -1.0 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2253 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_84 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_814 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_1065 -1.0 -2.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_600 -1.0 -2.2 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3611 -1.0 -0.8 HflC protein compare
Pf6N2E2_1635 -0.9 -2.7 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_1694 -0.9 -1.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_4661 -0.9 -1.9 KluA regulatory protein compare
Pf6N2E2_1699 -0.9 -1.9 FIG00955832: hypothetical protein compare
Pf6N2E2_4541 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_2487 -0.9 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_1006 -0.9 -1.8 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2285 -0.9 -0.9 FIG00954079: hypothetical protein compare
Pf6N2E2_4678 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_2586 -0.9 -1.5 Hpt domain protein compare
Pf6N2E2_4640 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_3039 -0.9 -2.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1024 -0.9 -1.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_4479 -0.9 -2.0 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_595 -0.9 -1.8 Arsenical resistance operon repressor compare
Pf6N2E2_2425 -0.9 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2754 -0.9 -1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1450 -0.9 -1.4 FIG00960438: hypothetical protein compare
Pf6N2E2_74 -0.9 -1.8 DedD protein compare
Pf6N2E2_4546 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_2218 -0.9 -2.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5668 -0.9 -2.2 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_5749 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3270 -0.9 -2.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1596 -0.9 -1.3 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5155 -0.9 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_667 -0.9 -2.9 Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-) compare
Pf6N2E2_4433 -0.8 -4.3 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) compare
Pf6N2E2_2706 -0.8 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3060 -0.8 -2.3 Outer membrane protein H precursor compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chloride across organisms