Experiment set5IT087 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

200 most important genes:

  gene name fitness t score description  
CSW01_12335 -5.3 -10.1 outer membrane protein TolC compare
CSW01_02890 -4.5 -9.1 aspartate kinase compare
CSW01_11535 -3.7 -7.3 thiamine-phosphate kinase compare
CSW01_09245 -3.4 -6.6 Holliday junction branch migration protein RuvA compare
CSW01_01300 -2.9 -4.0 sugar ABC transporter compare
CSW01_01015 -2.9 -15.3 DNA helicase II compare
CSW01_09240 -2.5 -5.3 Holliday junction branch migration DNA helicase RuvB compare
CSW01_07190 -2.5 -9.6 transcriptional regulator FNR compare
CSW01_05575 -2.4 -4.8 phosphate acetyltransferase compare
CSW01_18350 -2.2 -1.4 cell division protein DedD compare
CSW01_02875 -2.2 -7.5 DNA recombination/repair protein RecA compare
CSW01_00650 -2.2 -8.6 tyrosine recombinase XerC compare
CSW01_03325 -2.0 -1.4 porin compare
CSW01_03795 -2.0 -1.8 phosphate ABC transporter ATP-binding protein compare
CSW01_05630 -2.0 -10.4 replication-associated recombination protein A compare
CSW01_03790 -1.9 -4.1 phosphate ABC transporter, permease protein PstA compare
CSW01_05195 -1.8 -6.8 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_13305 -1.8 -2.5 shikimate kinase compare
CSW01_12815 -1.7 -9.1 RNA polymerase sigma-54 factor compare
CSW01_10245 -1.6 -5.4 ABC transporter compare
CSW01_09365 -1.6 -5.8 pyruvate formate lyase 1-activating protein compare
CSW01_04390 -1.6 -2.4 outer membrane protein assembly factor BamE compare
CSW01_12250 -1.6 -5.6 site-specific tyrosine recombinase XerD compare
CSW01_05340 -1.6 -9.2 LysR family transcriptional regulator compare
CSW01_13420 -1.6 -2.4 elongation factor P--(R)-beta-lysine ligase compare
CSW01_12770 -1.5 -7.5 ABC transporter permease compare
CSW01_02755 -1.5 -2.4 glutamyl-tRNA amidotransferase compare
CSW01_09350 -1.4 -9.7 formate C-acetyltransferase compare
CSW01_12365 -1.4 -2.8 inorganic phosphate transporter compare
CSW01_14680 -1.4 -2.2 aminotransferase compare
CSW01_11565 -1.4 -2.5 transcriptional regulator NrdR compare
CSW01_03785 -1.4 -3.0 phosphate ABC transporter permease compare
CSW01_04650 -1.4 -1.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_00560 -1.4 -2.1 DNA polymerase I compare
CSW01_03410 -1.4 -2.4 polyribonucleotide nucleotidyltransferase compare
CSW01_09620 -1.4 -2.7 trigger factor compare
CSW01_08630 -1.3 -5.8 condensin subunit F compare
CSW01_09420 -1.3 -1.8 DUF2062 domain-containing protein compare
CSW01_03330 -1.3 -4.5 transcription elongation factor GreA compare
CSW01_13285 -1.3 -2.5 ribulose-phosphate 3-epimerase compare
CSW01_14910 -1.3 -2.7 cold-shock protein compare
CSW01_10390 -1.3 -4.2 ferrous iron transport protein A compare
CSW01_01845 -1.3 -7.0 protease modulator HflK compare
CSW01_05370 -1.3 -1.8 YbaB/EbfC family nucleoid-associated protein compare
CSW01_17855 -1.3 -9.4 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_10190 -1.3 -5.0 nucleoid-associated protein compare
CSW01_09525 -1.3 -0.8 DNA translocase FtsK compare
CSW01_14055 -1.3 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_09250 -1.3 -0.8 crossover junction endodeoxyribonuclease RuvC compare
CSW01_01295 -1.2 -1.7 ABC transporter permease compare
CSW01_12760 -1.2 -4.0 phospholipid-binding protein MlaC compare
CSW01_03870 -1.2 -1.5 inositol monophosphatase compare
CSW01_19435 -1.2 -2.0 hypothetical protein compare
CSW01_00850 -1.2 -9.8 multidrug resistance protein compare
CSW01_02970 -1.2 -5.7 glutamate--cysteine ligase compare
CSW01_08620 -1.2 -8.0 chromosome partition protein MukB compare
CSW01_00450 -1.1 -2.0 SCP2 domain-containing protein compare
CSW01_01265 -1.1 -2.6 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_10875 -1.1 -3.4 redox-regulated ATPase YchF compare
CSW01_01245 -1.1 -3.3 lipopolysaccharide heptosyltransferase II compare
CSW01_08240 -1.1 -2.2 ATP-binding protein compare
CSW01_01185 -1.1 -5.0 ADP-heptose--LPS heptosyltransferase compare
CSW01_02085 -1.1 -6.9 UTP--glucose-1-phosphate uridylyltransferase compare
CSW01_10165 -1.0 -7.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_06585 -1.0 -2.8 fumarate hydratase compare
CSW01_10560 -1.0 -3.6 chorismate synthase compare
CSW01_10385 -1.0 -6.7 Fe(2+) transporter permease subunit FeoB compare
CSW01_02450 -1.0 -6.0 pyrroline-5-carboxylate reductase compare
CSW01_00855 -1.0 -7.5 MexH family multidrug efflux RND transporter periplasmic adaptor subunit compare
CSW01_10750 -1.0 -2.2 outer membrane protein assembly factor BamC compare
CSW01_01440 -1.0 -7.9 lysine:cadaverine antiporter compare
CSW01_04375 -1.0 -2.6 SsrA-binding protein compare
CSW01_05580 -1.0 -4.2 acetate kinase compare
CSW01_12775 -1.0 -6.8 phospholipid ABC transporter ATP-binding protein MlaF compare
CSW01_01850 -1.0 -4.3 protease modulator HflC compare
CSW01_05890 -0.9 -4.1 hypothetical protein compare
CSW01_03155 -0.9 -5.2 RNA polymerase-binding transcription factor DksA compare
CSW01_12765 -0.9 -4.0 outer membrane lipid asymmetry maintenance protein MlaD compare
CSW01_01490 -0.9 -2.1 Fis family transcriptional regulator compare
CSW01_01445 -0.9 -7.8 lysine decarboxylase compare
CSW01_15860 -0.9 -1.9 DUF645 domain-containing protein compare
CSW01_17780 -0.9 -2.3 hypothetical protein compare
CSW01_04660 -0.9 -6.4 PTS trehalose transporter subunit IIBC compare
CSW01_08625 -0.9 -3.6 chromosome partition protein MukE compare
CSW01_01435 -0.9 -7.2 transcriptional regulator CadC compare
CSW01_10255 -0.9 -1.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_07450 -0.9 -3.7 Lon protease family protein compare
CSW01_03975 -0.9 -4.4 exodeoxyribonuclease VII large subunit compare
CSW01_14495 -0.8 -2.1 NUDIX hydrolase compare
CSW01_13430 -0.8 -5.6 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
CSW01_13805 -0.8 -2.6 Hsp33 family molecular chaperone HslO compare
CSW01_01190 -0.8 -4.0 glycosyltransferase family 2 protein compare
CSW01_13680 -0.8 -6.4 DNA helicase RecG compare
CSW01_01515 -0.8 -2.3 type II 3-dehydroquinate dehydratase compare
CSW01_12465 -0.8 -2.8 elongation factor 4 compare
CSW01_19395 -0.8 -1.2 histidine kinase compare
CSW01_11690 -0.8 -5.4 hypothetical protein compare
CSW01_16785 -0.8 -2.0 hypothetical protein compare
CSW01_10565 -0.8 -2.9 hypothetical protein compare
CSW01_04930 -0.8 -2.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_11390 -0.8 -5.2 class I SAM-dependent methyltransferase compare
CSW01_11710 -0.8 -4.3 transcriptional regulator compare
CSW01_09955 -0.8 -3.9 L-asparaginase 1 compare
CSW01_04570 -0.8 -2.5 exodeoxyribonuclease 7 small subunit compare
CSW01_03045 -0.8 -1.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_03180 -0.7 -6.0 serine protease compare
CSW01_05880 -0.7 -4.0 alpha-L-glutamate ligase-like protein compare
CSW01_01260 -0.7 -5.5 polysaccharide deacetylase compare
CSW01_13425 -0.7 -6.2 fumarate reductase (quinol) flavoprotein subunit compare
CSW01_13505 -0.7 -4.9 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
CSW01_13440 -0.7 -3.2 fumarate reductase subunit D compare
CSW01_11915 -0.7 -2.8 hypothetical protein compare
CSW01_01125 -0.7 -3.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_04940 -0.7 -0.8 hypothetical protein compare
CSW01_16590 -0.7 -1.2 N-acetyltransferase compare
CSW01_06675 -0.7 -2.4 (Na+)-NQR maturation NqrM compare
CSW01_13300 -0.7 -3.5 3-dehydroquinate synthase compare
CSW01_17525 -0.7 -1.3 hypothetical protein compare
CSW01_12680 -0.7 -4.0 cytosol aminopeptidase compare
CSW01_03095 -0.7 -2.1 hypothetical protein compare
CSW01_09515 -0.7 -4.8 Na+/H+ antiporter NhaB compare
CSW01_08435 -0.7 -3.1 phage shock protein PspA compare
CSW01_00590 -0.6 -5.3 oxygen-independent coproporphyrinogen III oxidase compare
CSW01_18270 -0.6 -1.1 L-ectoine synthase compare
CSW01_02265 -0.6 -3.1 arginine repressor compare
CSW01_02830 -0.6 -3.2 murein hydrolase activator NlpD compare
CSW01_16130 -0.6 -0.8 acetyltransferase compare
CSW01_16705 -0.6 -2.0 hypothetical protein compare
CSW01_00900 -0.6 -1.2 hypothetical protein compare
CSW01_07160 -0.6 -2.7 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_15310 -0.6 -1.6 exoribonuclease R compare
CSW01_19385 -0.6 -1.8 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
CSW01_11935 -0.6 -3.8 sodium:alanine symporter family protein compare
CSW01_08345 -0.6 -1.4 hypothetical protein compare
CSW01_04845 -0.6 -3.0 D-alanyl-D-alanine carboxypeptidase compare
CSW01_08665 -0.6 -1.4 DNA transformation protein compare
CSW01_02490 -0.6 -2.7 glutathione synthetase compare
CSW01_04850 -0.6 -3.7 septal ring lytic transglycosylase RlpA compare
CSW01_03770 -0.6 -2.9 phosphate ABC transporter substrate-binding protein compare
CSW01_05090 -0.5 -2.3 tRNA pseudouridine(38-40) synthase TruA compare
CSW01_13410 -0.5 -2.3 protein-export protein SecB compare
CSW01_05180 -0.5 -1.1 tRNA-Asn compare
CSW01_01965 -0.5 -0.7 glucose-6-phosphate isomerase compare
CSW01_18315 -0.5 -2.0 methyltransferase compare
CSW01_11585 -0.5 -3.9 esterase FrsA compare
CSW01_06315 -0.5 -1.9 DUF3943 domain-containing protein compare
CSW01_05480 -0.5 -2.3 hypothetical protein compare
CSW01_01140 -0.5 -2.1 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_11780 -0.5 -0.7 exodeoxyribonuclease V subunit beta compare
CSW01_00415 -0.5 -1.0 hypothetical protein compare
CSW01_11870 -0.5 -3.0 DNA repair protein RadA compare
CSW01_07145 -0.5 -1.5 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_01240 -0.5 -3.1 lipopolysaccharide biosynthesis protein compare
CSW01_00465 -0.5 -1.6 twin-arginine translocase subunit TatB compare
CSW01_03025 -0.5 -2.6 hypothetical protein compare
CSW01_05800 -0.5 -1.2 ATP-dependent Clp protease adaptor ClpS compare
CSW01_17510 -0.5 -1.6 peptidylprolyl isomerase compare
CSW01_03475 -0.5 -1.8 ATP-dependent RNA helicase SrmB compare
CSW01_11670 -0.5 -0.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_11115 -0.5 -1.9 hypothetical protein compare
CSW01_07435 -0.5 -1.0 hypothetical protein compare
CSW01_10355 -0.5 -2.1 phosphohistidine phosphatase SixA compare
CSW01_05885 -0.5 -3.3 gonadoliberin III compare
CSW01_01330 -0.5 -1.0 oxidoreductase compare
CSW01_00735 -0.5 -0.8 DUF1145 domain-containing protein compare
CSW01_10460 -0.5 -1.8 Nif3-like dinuclear metal center hexameric protein compare
CSW01_02315 -0.5 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_04585 -0.5 -2.0 tRNA 4-thiouridine(8) synthase ThiI compare
CSW01_03985 -0.5 -1.7 GMP synthase (glutamine-hydrolyzing) compare
CSW01_15120 -0.5 -1.2 iron(III) ABC transporter permease compare
CSW01_10130 -0.5 -2.6 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_01250 -0.5 -4.0 polymerase compare
CSW01_11125 -0.5 -2.3 hypothetical protein compare
CSW01_10180 -0.5 -3.1 Na+/H+ antiporter NhaC compare
CSW01_08615 -0.5 -2.6 Lrp/AsnC family transcriptional regulator compare
CSW01_05260 -0.5 -2.6 hypothetical protein compare
CSW01_09935 -0.5 -2.4 hypothetical protein compare
CSW01_11775 -0.5 -3.3 exodeoxyribonuclease V subunit alpha compare
CSW01_12005 -0.5 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_18630 -0.5 -1.9 6-phosphogluconolactonase compare
CSW01_07225 -0.5 -1.4 cytochrome-c oxidase, cbb3-type subunit II compare
CSW01_08085 -0.5 -2.5 ABC transporter permease compare
CSW01_14130 -0.5 -0.8 hypothetical protein compare
CSW01_11330 -0.5 -2.0 DNA endonuclease SmrA compare
CSW01_08080 -0.5 -2.8 HlyD family secretion protein compare
CSW01_14135 -0.4 -2.4 type VI secretion system tube protein Hcp compare
CSW01_09625 -0.4 -1.0 hypothetical protein compare
CSW01_08710 -0.4 -1.2 hypothetical protein compare
CSW01_05065 -0.4 -2.4 N-acetylglucosamine repressor compare
CSW01_00025 -0.4 -0.6 membrane protein insertion efficiency factor YidD compare
CSW01_11415 -0.4 -2.1 phenolic acid decarboxylase compare
CSW01_12130 -0.4 -1.5 DUF721 domain-containing protein compare
CSW01_11290 -0.4 -2.3 hypothetical protein compare
CSW01_16575 -0.4 -1.3 acetyltransferase compare
CSW01_06950 -0.4 -3.4 ATP-dependent RNA helicase HrpA compare
CSW01_15180 -0.4 -0.7 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_07230 -0.4 -2.2 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_08545 -0.4 -1.1 YdcF family protein compare
CSW01_12755 -0.4 -0.7 anti-sigma B factor antagonist compare
CSW01_11725 -0.4 -2.0 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids in Vibrio cholerae E7946 ATCC 55056

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms