Experiment set5IT087 for Sphingomonas koreensis DSMZ 15582
LB, pH6
Group: pHMedia: LB, pH=6
Culturing: korea_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Mark on 2/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1139 A3,B3
Specific Phenotypes
For 1 genes in this experiment
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| superpathway of 4-aminobutanoate degradation | 3 | 2 | 2 |
| 4-aminobutanoate degradation III | 2 | 1 | 1 |
| 4-aminobutanoate degradation I | 2 | 1 | 1 |
| 4-aminobutanoate degradation II | 2 | 1 | 1 |
| 4-aminobutanoate degradation IV | 3 | 2 | 1 |
| N-methylpyrrolidone degradation | 3 | 1 | 1 |
| GABA shunt I | 4 | 1 | 1 |
| GABA shunt II | 4 | 1 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 4 | 2 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 6 | 2 |
| 4-hydroxyphenylacetate degradation | 8 | 3 | 1 |
| TCA cycle IV (2-oxoglutarate decarboxylase) | 9 | 8 | 1 |
| nicotine degradation II (pyrrolidine pathway) | 11 | 2 | 1 |
| nicotine degradation I (pyridine pathway) | 17 | 4 | 1 |