Experiment set5IT087 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoYLS4 with DETA/NO 100uM

200 most detrimental genes:

  gene name fitness t score description  
DVU1748 +1.4 1.2 conserved hypothetical protein (TIGR) compare
DVU1429 +1.4 1.3 GTP-binding protein (TIGR) compare
DVU_tRNA-Ala-5 tRNA-Ala +1.2 0.8 tRNA with anticodon CGC for Ala (VIMSS-AUTO) compare
DORF41147 +1.2 1.7 no description compare
DVU1521 +1.1 0.6 hypothetical protein (TIGR) compare
DORF831 +1.1 1.5 SEED: FIG00602593: hypothetical protein compare
DVU2957 +1.1 0.5 hypothetical protein (TIGR) compare
DVU1186 mazG +1.0 1.5 phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data) compare
DVU0196 +1.0 1.3 hypothetical protein (TIGR) compare
DVU1377 ilvN-2 +1.0 0.8 acetolactate synthase, small subunit (TIGR) compare
DVU3314 +1.0 2.6 peptidase, U32 family (TIGR) compare
DVU2073 cheY-2 +1.0 3.8 chemotaxis protein CheY (TIGR) compare
DVU2659 +0.9 2.3 exsB protein (TIGR) compare
DVU1154 +0.8 0.9 hypothetical protein (TIGR) compare
DVU2548 acpD +0.8 4.6 acyl carrier protein phosphodiesterase (TIGR) compare
DVU2454 +0.7 0.6 hypothetical protein (TIGR) compare
DVU0689 rnhA +0.7 0.9 ribonuclease HI (TIGR) compare
DVU3170 cobJ +0.7 4.1 precorrin-3b C17-methyltransferase (TIGR) compare
DVU2012 +0.7 0.7 hypothetical protein (TIGR) compare
DORF37657 +0.6 1.0 SEED: Magnesium and cobalt efflux protein CorC compare
DVU1931 +0.6 1.5 iron-sulfur cluster-binding protein (TIGR) compare
DVU0301 +0.6 0.8 hypothetical protein (TIGR) compare
DVU0914 cobS +0.6 1.8 cobalamin-5-phosphate synthase (TIGR) compare
DVU3087 cobH +0.6 3.0 precorrin-8X methylmutase (TIGR) compare
DORF7930 +0.6 1.7 no description compare
DVU0816 cobQ +0.6 4.0 cobyric acid synthase CobQ (TIGR) compare
DVU1145 +0.6 1.0 hypothetical protein (TIGR) compare
DVU2863 +0.6 0.7 hypothetical protein (TIGR) compare
DVU0533 hmcD +0.6 0.9 HmcD, 5.8 kd protein in hmc operon (voordouw) compare
DVU0205 +0.6 1.7 hypothetical protein (TIGR) compare
DVU1080 +0.5 1.6 iron-sulfur cluster-binding protein (TIGR) compare
DVU0736 purN +0.5 4.2 phosphoribosylglycinamide formyltransferase (TIGR) compare
DVU2287 +0.5 0.5 hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR) compare
DVU2297 +0.5 3.1 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein (TIGR) compare
DVU3202 +0.5 2.5 hydrolase, TatD family (TIGR) compare
DVU2237 cbiB +0.5 2.5 cobalamin biosynthesis protein CobD, putative (TIGR) compare
DVU1908 pdxJ +0.5 0.9 pyridoxal phosphate biosynthetic protein PdxJ (TIGR) compare
DVU1069 +0.5 2.2 branched chain amino acid ABC transporter, permease protein (TIGR) compare
DVU3281 +0.5 2.5 hypothetical protein (TIGR) compare
DVU1510 +0.5 0.5 hypothetical protein (TIGR) compare
DVU3277 +0.5 0.5 hypothetical protein (TIGR) compare
DORF9585 +0.5 0.7 no description compare
DVU2650 +0.5 1.2 hypothetical protein (TIGR) compare
DVU0657 +0.5 1.2 heat shock protein, Hsp20 family (TIGR) compare
DVU2298 opuBB +0.5 2.4 glycine/betaine/L-proline ABC transporter, permease protein (TIGR) compare
DVU1067 +0.5 2.4 membrane protein, Bmp family (TIGR) compare
DVU3089 +0.5 2.4 hypothetical protein (TIGR) compare
DVU2299 proV +0.5 3.2 glycine/betaine/L-proline ABC transporter, ATP binding protein (TIGR) compare
DVU_tRNA-Leu-4 tRNA-Leu +0.5 1.3 tRNA with anticodon GAG for Leu (VIMSS-AUTO) compare
DVU2189 +0.5 1.6 transcriptional regulator cII, putative (TIGR) compare
DVU0133 +0.5 2.8 hypothetical protein (TIGR) compare
DVU2305 +0.5 0.5 conserved hypothetical protein (TIGR) compare
DVU0951 moeA-2 +0.4 1.6 molybdopterin biosynthesis MoeA protein, putative (TIGR) compare
DVU2115 +0.4 0.8 hypothetical protein (TIGR) compare
DVU1926 +0.4 2.3 conserved hypothetical protein (TIGR) compare
DVU3086 cobB-2 +0.4 2.8 cobyrinic acid a,c-diamide synthase (TIGR) compare
DVU2203 +0.4 1.1 endoribonuclease, L-PSP family (TIGR) compare
DVU2113 +0.4 1.8 xanthine/uracil permease family protein (TIGR) compare
DVU2044 +0.4 0.9 hypothetical protein (TIGR) compare
DVU0010 +0.4 1.9 TRAP transporter, DctQ family (TIGR) compare
DVU0944 +0.4 1.2 hypothetical protein (TIGR) compare
DVU1250 gidB +0.4 2.2 methyltransferase GidB (TIGR) compare
DVU0419 nspC +0.4 2.7 carboxynorspermidine decarboxylase (TIGR) compare
DVU2749 cobL +0.4 2.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) (TIGR) compare
DVU2216 infA-2 +0.4 1.5 translation initiation factor IF-1 (TIGR) compare
DVU2176 +0.4 0.7 hypothetical protein (TIGR) compare
DVU2325 merP +0.4 0.7 mercuric transport protein periplasmic component (TIGR) compare
DORF25031 +0.4 1.4 SEED: FIG00606465: hypothetical protein compare
DVU0368 +0.4 0.7 hypothetical protein (TIGR) compare
DVU1007 cobU +0.4 2.0 cobinamide kinase/cobinamide phosphate guanylyltransferase (TIGR) compare
DVU0987 +0.4 0.9 heavy metal-binding domain protein (TIGR) compare
DVU0815 +0.4 2.6 AsmA family protein (TIGR) compare
DVU2770 +0.4 2.2 response regulator (TIGR) compare
DVU0580 moaA +0.4 1.7 molybdenum cofactor biosynthesis protein A (TIGR) compare
DVU0683 +0.4 1.9 hflC protein, putative (TIGR) compare
DORF15023 +0.4 1.1 no description compare
DVU0650 +0.4 2.5 chelatase, putative (TIGR) compare
DORF43274 +0.4 1.9 no description compare
DVU2230 deoD +0.4 2.6 purine nucleoside phosphorylase (TIGR) compare
DVU0421 +0.4 2.5 agmatinase, putative (TIGR) compare
DVU2846 +0.4 1.0 hypothetical protein (TIGR) compare
DVU2840 +0.4 1.1 conserved hypothetical protein (TIGR) compare
DVU3306 +0.4 2.1 hypothetical protein (TIGR) compare
DVU1193 radC +0.4 1.7 DNA repair protein RadC (TIGR) compare
DORF18707 +0.4 0.3 no description compare
DORF8571 +0.4 0.7 SEED: FIG00603598: hypothetical protein compare
DVU1192 acyP +0.4 1.1 acylphosphatase (TIGR) compare
DVU1294 +0.4 1.5 conserved hypothetical protein (TIGR) compare
DVU2946 +0.4 0.9 hypothetical protein (TIGR) compare
DVU1124 +0.4 2.7 hypothetical protein (TIGR) compare
DVU1185 +0.4 1.1 colicin V production family protein (TIGR) compare
DVU1654 xerD +0.4 1.1 site-specific recombinase, phage integrase family (TIGR) compare
DVU1078 +0.4 3.0 R3H domain protein (TIGR) compare
DVU1859 +0.4 0.8 hypothetical protein (TIGR) compare
DVU0417 speA +0.4 2.1 arginine decarboxylase (TIGR) compare
DVU1700 +0.4 1.4 metallo-beta-lactamase family protein (TIGR) compare
DVU0904 recJ +0.4 1.6 single-stranded-DNA-specific exonuclease RecJ (TIGR) compare
DVU3141 +0.3 1.1 lipoprotein, putative (TIGR) compare
DVU0429 +0.3 1.1 Ech hydrogenase, subunit EchF, putative (TIGR) compare
DVU2231 typA +0.3 2.6 GTP-binding protein TypA (TIGR) compare
DORF17147 +0.3 1.4 SEED: TPR domain protein compare
DVU1188 +0.3 1.6 hypothetical protein (TIGR) compare
DVU0431 +0.3 2.2 Ech hydrogenase, subunit EchD, putative (TIGR) compare
DORF28817 +0.3 1.4 no description compare
DVU0167 oppC +0.3 1.4 oligopeptide/dipeptide ABC transporter, permease protein (TIGR) compare
DVU0407 rlpA +0.3 1.1 rare lipoprotein A family protein (TIGR) compare
DVU1253 +0.3 1.2 hypothetical protein (TIGR) compare
DVU0398 +0.3 0.2 HMGL-like domain protein (TIGR) compare
DVU1030 +0.3 0.9 universal stress protein family (TIGR) compare
DVU2748 cobM +0.3 1.2 precorrin-4 C11-methyltransferase (TIGR) compare
DVU2933 +0.3 1.8 response regulator/sensory box/HDIG domain protein (TIGR) compare
DVU1348 xseB +0.3 1.1 exodeoxyribonuclease VII, small subunit (TIGR) compare
DVU1068 +0.3 1.0 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU1848 +0.3 2.0 conserved hypothetical protein (TIGR) compare
DVU2420 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DVU1745 +0.3 2.0 DNA-binding protein (TIGR) compare
DVU0480 +0.3 2.0 hypothetical protein (TIGR) compare
DVU2581 cheYIV +0.3 1.5 response regulator (TIGR) compare
DORF9582 +0.3 1.5 no description compare
DVU0941 pep* +0.3 2.1 metalloprotease, iron-related (Dmitry Rodionov) compare
DVU2167 +0.3 1.3 hypothetical protein (TIGR) compare
DVU0391 +0.3 1.6 hypothetical protein (TIGR) compare
DVU0259 divK +0.3 0.7 DNA-binding response regulator (TIGR) compare
DVU1517 +0.3 1.7 transcriptional regulator cII, putative (TIGR) compare
DVU3061 +0.3 2.4 sensory box histidine kinase (TIGR) compare
DVU2766 +0.3 0.8 hypothetical protein (TIGR) compare
DVU1483 +0.3 1.5 tail fiber assembly protein, putative (TIGR) compare
DVU1988 +0.3 2.5 membrane protein, putative (TIGR) compare
DORF14650 +0.3 1.1 no description compare
DORF26446 +0.3 0.4 no description compare
DVU2268 +0.3 0.7 hypothetical protein (TIGR) compare
DVU1152 +0.3 1.8 hypothetical protein (TIGR) compare
DVUA0043 +0.3 2.1 polysaccharide deacetylase family protein (TIGR) compare
DVU1522 +0.3 1.9 hypothetical protein (TIGR) compare
DVU0864 +0.3 0.8 glycoprotease family protein, putative (TIGR) compare
DVU2014 fprA-1 +0.3 1.0 metallo-beta-lactamase family protein (TIGR) compare
DVU1982 rhlE +0.3 1.7 ATP-dependent RNA helicase RhlE (TIGR) compare
DORF43335 +0.3 0.4 no description compare
DVU0443 +0.3 1.9 exonuclease, putative (Keith Keller) compare
DVU0418 lys1 +0.3 1.8 saccharopine dehydrogenase (TIGR) compare
DVU0008 +0.3 0.2 hypothetical protein (TIGR) compare
DVU2001 +0.3 2.4 site-specific recombinase, phage integrase family, authentic frameshift (TIGR) compare
DVU1796 +0.3 0.4 hypothetical protein (TIGR) compare
DVU0754 +0.3 0.6 hypothetical protein (TIGR) compare
DVU1814 +0.3 1.4 cytochrome c oxidase, subunit III, putative (TIGR) compare
DORF123 +0.3 1.7 SEED: FIG00603348: hypothetical protein compare
DVU1505 +0.3 2.2 holin, putative (TIGR) compare
DVU1052 +0.3 1.6 CBS domain protein (TIGR) compare
DVU0897 +0.3 1.2 RNA modification enzyme, MiaB-family (TIGR) compare
DVU0649 +0.3 1.8 iron compound ABC transporter, permease protein (TIGR) compare
DVU1470 ppiC +0.3 0.8 peptidyl-prolyl cis-trans isomerase C (TIGR) compare
DVU0646 cobI +0.3 1.0 precorrin-2 C20-methyltransferase (TIGR) compare
DVU2513 mraZ +0.3 0.6 conserved hypothetical protein TIGR00242 (TIGR) compare
DVU0247 ntrX +0.3 1.3 response regulator (TIGR) compare
DVUA0006 mgtE +0.3 2.1 magnesium transporter MgtE, putative (TIGR) compare
DVU3093 rdl +0.3 1.3 rubredoxin-like protein (TIGR) compare
DVU1403 cobO +0.3 1.0 cob(I)alamin adenosyltransferase (TIGR) compare
DVU0671 +0.3 1.6 conserved hypothetical protein (TIGR) compare
DVU1164 amiE +0.3 1.8 aliphatic amidase (TIGR) compare
DORF807 +0.3 0.8 no description compare
DVU1421 +0.3 1.0 hypothetical protein (TIGR) compare
DVU1260 +0.3 1.6 outer membrane protein P1, putative (TIGR) compare
DVU0544 +0.3 2.1 hypothetical protein (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +0.3 0.2 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU2067 +0.3 0.8 GGDEF domain protein (TIGR) compare
DVU0506 +0.3 0.9 DHH family protein (TIGR) compare
DVU2554 +0.3 1.2 conserved hypothetical protein (TIGR) compare
DVU1560 +0.3 2.0 molybdopterin biosynthesis protein, putative (TIGR) compare
DVU0420 +0.3 0.3 hypothetical protein (TIGR) compare
DORF19125 +0.3 2.0 SEED: 12 compare
DVU2811 +0.3 1.4 formate dehydrogenase, beta subunit, putative (TIGR) compare
DVU0758 +0.3 1.1 hypothetical protein (TIGR) compare
DVU2629 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1682 +0.3 1.0 GAF domain protein (TIGR) compare
DVU1491 +0.3 0.5 conserved hypothetical protein (TIGR) compare
DVU1641 +0.3 0.9 conserved hypothetical protein (TIGR) compare
DVU_tRNA-Arg-1 tRNA-Arg +0.3 0.4 tRNA with anticodon ACG for Arg (VIMSS-AUTO) compare
DVU1177 +0.3 1.7 hypothetical protein (TIGR) compare
DVU2381 +0.3 2.2 conserved hypothetical protein (TIGR) compare
DVU2162 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2392 +0.3 1.6 type III secretion chaperone, CesT family (TIGR) compare
DVU2652 +0.3 1.3 hypothetical protein (TIGR) compare
DVU0706 +0.3 1.1 membrane protein, putative (TIGR) compare
DVU1676 secG +0.3 0.5 preprotein translocase, SecG subunit (TIGR) compare
DVU0383 +0.3 1.2 hypothetical protein (TIGR) compare
DVU2470 b0786 +0.3 1.0 membrane protein, putaive (TIGR) compare
DVU2442 +0.3 1.7 heat shock protein, Hsp20 family (TIGR) compare
DVU2784 lldD +0.3 1.8 dehydrogenase, FMN-dependent family (TIGR) compare
DVU2293 cooF +0.3 0.3 iron-sulfur protein CooF (TIGR) compare
DVU2793 +0.3 1.7 electron transport complex protein RnfD, putative (TIGR) compare
DVU2560 +0.3 1.4 conserved domain protein (TIGR) compare
DVU3320 +0.2 1.6 conserved domain protein (TIGR) compare
DVU2492 trpF-2 +0.2 1.6 N-(5-phosphoribosyl)anthranilate isomerase (TIGR) compare
DVU0176 +0.2 1.4 glycerophosphoryl diester phosphodiesterase family protein (TIGR) compare
DVU2968 +0.2 1.7 sensor histidine kinase/response regulator (TIGR) compare
DVU1644 +0.2 1.7 permease, putative (TIGR) compare
DVU2048 +0.2 0.1 hypothetical protein (TIGR) compare
DVU2771 +0.2 1.7 conserved hypothetical protein (TIGR) compare
DVU0066 +0.2 1.2 cytidine/deoxycytidylate deaminase domain protein (TIGR) compare
DVU2747 +0.2 2.0 hypothetical protein (TIGR) compare


Specific Phenotypes

For 3 genes in this experiment

For stress DETA/NO in Desulfovibrio vulgaris Hildenborough JW710

For stress DETA/NO across organisms