Experiment set5IT086 for Vibrio cholerae E7946 ATCC 55056

Compare to:

LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

200 most important genes:

  gene name fitness t score description  
CSW01_01300 -2.6 -5.2 sugar ABC transporter compare
CSW01_09240 -2.0 -5.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_13420 -1.9 -3.7 elongation factor P--(R)-beta-lysine ligase compare
CSW01_13305 -1.8 -2.4 shikimate kinase compare
CSW01_05575 -1.6 -3.6 phosphate acetyltransferase compare
CSW01_02755 -1.6 -2.4 glutamyl-tRNA amidotransferase compare
CSW01_02890 -1.5 -9.2 aspartate kinase compare
CSW01_09365 -1.5 -6.2 pyruvate formate lyase 1-activating protein compare
CSW01_11535 -1.5 -5.9 thiamine-phosphate kinase compare
CSW01_03790 -1.5 -3.7 phosphate ABC transporter, permease protein PstA compare
CSW01_01295 -1.5 -1.8 ABC transporter permease compare
CSW01_12365 -1.4 -3.0 inorganic phosphate transporter compare
CSW01_08450 -1.4 -2.3 antimicrobial peptide ABC transporter permease SapB compare
CSW01_13805 -1.3 -3.3 Hsp33 family molecular chaperone HslO compare
CSW01_05265 -1.1 -1.6 methionine--tRNA ligase compare
CSW01_10190 -1.1 -3.7 nucleoid-associated protein compare
CSW01_09350 -1.1 -7.3 formate C-acetyltransferase compare
CSW01_12480 -1.0 -1.8 sigma-E factor negative regulatory protein RseA compare
CSW01_18525 -1.0 -2.2 integrase compare
CSW01_18350 -1.0 -0.8 cell division protein DedD compare
CSW01_04650 -1.0 -1.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_03410 -1.0 -1.8 polyribonucleotide nucleotidyltransferase compare
CSW01_01015 -1.0 -7.0 DNA helicase II compare
CSW01_00650 -1.0 -5.3 tyrosine recombinase XerC compare
CSW01_10565 -1.0 -1.3 hypothetical protein compare
CSW01_09525 -0.9 -0.8 DNA translocase FtsK compare
CSW01_14055 -0.9 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_08125 -0.9 -2.1 glutaredoxin family protein compare
CSW01_04820 -0.9 -6.3 serine hydroxymethyltransferase compare
CSW01_13300 -0.9 -4.6 3-dehydroquinate synthase compare
CSW01_17855 -0.9 -6.0 autoinducer 2 sensor kinase/phosphatase LuxQ compare
CSW01_06970 -0.9 -1.2 DUF2256 domain-containing protein compare
CSW01_08620 -0.9 -6.1 chromosome partition protein MukB compare
CSW01_03985 -0.8 -2.6 GMP synthase (glutamine-hydrolyzing) compare
CSW01_11565 -0.8 -2.0 transcriptional regulator NrdR compare
CSW01_08630 -0.8 -3.4 condensin subunit F compare
CSW01_10390 -0.8 -1.5 ferrous iron transport protein A compare
CSW01_18420 -0.8 -2.6 hypothetical protein compare
CSW01_15870 -0.8 -1.7 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_12250 -0.8 -3.7 site-specific tyrosine recombinase XerD compare
CSW01_04850 -0.8 -4.5 septal ring lytic transglycosylase RlpA compare
CSW01_09045 -0.8 -3.6 hypothetical protein compare
CSW01_01515 -0.8 -2.2 type II 3-dehydroquinate dehydratase compare
CSW01_01965 -0.8 -0.7 glucose-6-phosphate isomerase compare
CSW01_04910 -0.8 -2.1 PhoH family protein compare
CSW01_01265 -0.8 -2.1 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_13285 -0.8 -1.8 ribulose-phosphate 3-epimerase compare
CSW01_11690 -0.8 -5.9 hypothetical protein compare
CSW01_08935 -0.8 -1.7 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_09245 -0.7 -2.8 Holliday junction branch migration protein RuvA compare
CSW01_04375 -0.7 -2.1 SsrA-binding protein compare
CSW01_10445 -0.7 -2.2 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_07190 -0.7 -2.7 transcriptional regulator FNR compare
CSW01_11730 -0.7 -1.5 2-dehydropantoate 2-reductase compare
CSW01_02875 -0.7 -3.9 DNA recombination/repair protein RecA compare
CSW01_14470 -0.7 -3.8 DUF134 domain-containing protein compare
CSW01_06810 -0.7 -0.8 hypothetical protein compare
CSW01_10560 -0.7 -2.5 chorismate synthase compare
CSW01_03975 -0.7 -2.7 exodeoxyribonuclease VII large subunit compare
CSW01_02450 -0.7 -4.0 pyrroline-5-carboxylate reductase compare
CSW01_10485 -0.7 -1.1 DUF2788 domain-containing protein compare
CSW01_09620 -0.7 -1.5 trigger factor compare
CSW01_17780 -0.7 -1.9 hypothetical protein compare
CSW01_15005 -0.7 -1.6 HNH endonuclease compare
CSW01_15680 -0.7 -1.3 DUF3265 domain-containing protein compare
CSW01_10385 -0.7 -4.7 Fe(2+) transporter permease subunit FeoB compare
CSW01_18270 -0.7 -1.6 L-ectoine synthase compare
CSW01_00560 -0.7 -2.1 DNA polymerase I compare
CSW01_03870 -0.7 -0.7 inositol monophosphatase compare
CSW01_17510 -0.7 -1.9 peptidylprolyl isomerase compare
CSW01_09485 -0.7 -1.5 DUF1425 domain-containing protein compare
CSW01_05275 -0.6 -1.2 hypothetical protein compare
CSW01_03880 -0.6 -0.9 HTH-type transcriptional regulator IscR compare
CSW01_11785 -0.6 -0.8 exonuclease V subunit gamma compare
CSW01_08515 -0.6 -2.0 trimethylamine N-oxide reductase system protein TorE compare
CSW01_05195 -0.6 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_16435 -0.6 -1.1 DUF3265 domain-containing protein compare
CSW01_11915 -0.6 -2.7 hypothetical protein compare
CSW01_12680 -0.6 -3.3 cytosol aminopeptidase compare
CSW01_06030 -0.6 -1.9 helicase compare
CSW01_15810 -0.6 -1.5 hypothetical protein compare
CSW01_03475 -0.6 -1.6 ATP-dependent RNA helicase SrmB compare
CSW01_10165 -0.6 -4.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
CSW01_05580 -0.6 -2.5 acetate kinase compare
CSW01_07230 -0.6 -2.7 cytochrome-c oxidase, cbb3-type subunit I compare
CSW01_18030 -0.6 -2.3 hypothetical protein compare
CSW01_00025 -0.6 -0.8 membrane protein insertion efficiency factor YidD compare
CSW01_05370 -0.6 -0.9 YbaB/EbfC family nucleoid-associated protein compare
CSW01_05180 -0.5 -1.1 tRNA-Asn compare
CSW01_12465 -0.5 -1.9 elongation factor 4 compare
CSW01_07460 -0.5 -1.0 ribosome modulation factor compare
CSW01_01490 -0.5 -1.6 Fis family transcriptional regulator compare
CSW01_06585 -0.5 -1.4 fumarate hydratase compare
CSW01_05280 -0.5 -2.3 uridine kinase compare
CSW01_00450 -0.5 -1.0 SCP2 domain-containing protein compare
CSW01_11115 -0.5 -2.2 hypothetical protein compare
CSW01_08240 -0.5 -1.3 ATP-binding protein compare
CSW01_17525 -0.5 -0.9 hypothetical protein compare
CSW01_16895 -0.5 -2.3 DNA-binding response regulator compare
CSW01_01195 -0.5 -0.7 ADP-heptose--LPS heptosyltransferase I compare
CSW01_08980 -0.5 -1.8 hypothetical protein compare
CSW01_14910 -0.5 -0.8 cold-shock protein compare
CSW01_00095 -0.5 -1.1 hypothetical protein compare
CSW01_12320 -0.5 -0.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_18315 -0.5 -2.1 methyltransferase compare
CSW01_07155 -0.5 -1.1 spermidine/putrescine ABC transporter permease PotB compare
CSW01_09840 -0.5 -3.1 o-succinylbenzoate--CoA ligase compare
CSW01_16195 -0.5 -0.8 DUF645 domain-containing protein compare
CSW01_14835 -0.5 -1.7 SIMPL domain-containing protein compare
CSW01_15120 -0.5 -1.3 iron(III) ABC transporter permease compare
CSW01_08675 -0.5 -0.9 DUF2007 domain-containing protein compare
CSW01_17370 -0.5 -1.6 hypothetical protein compare
CSW01_03915 -0.5 -1.1 Fe-S assembly protein IscX compare
CSW01_08345 -0.5 -1.5 hypothetical protein compare
CSW01_07210 -0.5 -1.3 hypothetical protein compare
CSW01_14125 -0.5 -2.0 1,4-alpha-glucan branching enzyme compare
CSW01_11080 -0.5 -2.8 transcriptional regulator compare
CSW01_08565 -0.5 -0.8 hypothetical protein compare
CSW01_09560 -0.5 -1.9 orotidine-5'-phosphate decarboxylase compare
CSW01_08425 -0.5 -1.8 envelope stress response membrane protein PspC compare
CSW01_05020 -0.5 -2.0 regulatory protein ToxS compare
CSW01_06435 -0.5 -1.8 C4-dicarboxylate ABC transporter compare
CSW01_04315 -0.5 -2.2 TCP pilus virulence regulatory protein compare
CSW01_05560 -0.4 -2.3 ABC transporter ATP-binding protein compare
CSW01_16590 -0.4 -0.8 N-acetyltransferase compare
CSW01_02315 -0.4 -3.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
CSW01_15060 -0.4 -1.2 hypothetical protein compare
CSW01_07605 -0.4 -2.0 molecular chaperone compare
CSW01_19435 -0.4 -0.8 hypothetical protein compare
CSW01_03075 -0.4 -1.4 phosphoheptose isomerase compare
CSW01_03795 -0.4 -0.5 phosphate ABC transporter ATP-binding protein compare
CSW01_16310 -0.4 -0.9 DUF3709 domain-containing protein compare
CSW01_09465 -0.4 -2.3 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_04260 -0.4 -2.4 pilus assembly protein compare
CSW01_04845 -0.4 -1.7 D-alanyl-D-alanine carboxypeptidase compare
CSW01_07450 -0.4 -2.0 Lon protease family protein compare
CSW01_19575 -0.4 -2.9 ABC transporter permease compare
CSW01_16325 -0.4 -0.8 hypothetical protein compare
CSW01_13565 -0.4 -2.4 cell division protein ZapB compare
CSW01_19555 -0.4 -1.5 response regulator compare
CSW01_09625 -0.4 -0.6 hypothetical protein compare
CSW01_05305 -0.4 -2.0 long-chain fatty acid transporter compare
CSW01_00330 -0.4 -1.5 fluoride efflux transporter CrcB compare
CSW01_12815 -0.4 -2.7 RNA polymerase sigma-54 factor compare
CSW01_18705 -0.4 -2.1 biopolymer transporter exbD1 compare
CSW01_08705 -0.4 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_16030 -0.4 -1.5 DUF3709 domain-containing protein compare
CSW01_16290 -0.4 -0.6 DUF1289 domain-containing protein compare
CSW01_04930 -0.4 -1.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_10750 -0.4 -1.7 outer membrane protein assembly factor BamC compare
CSW01_14625 -0.4 -1.0 hypothetical protein compare
CSW01_09955 -0.4 -1.5 L-asparaginase 1 compare
CSW01_03335 -0.4 -2.0 ribosome assembly RNA-binding protein YhbY compare
CSW01_03695 -0.4 -1.7 ribosomal large subunit pseudouridine synthase D compare
CSW01_12255 -0.4 -1.3 flavodoxin FldB compare
CSW01_09660 -0.4 -0.9 hypothetical protein compare
CSW01_14680 -0.4 -0.7 aminotransferase compare
CSW01_04660 -0.4 -3.3 PTS trehalose transporter subunit IIBC compare
CSW01_05320 -0.4 -1.6 hypothetical protein compare
CSW01_13650 -0.4 -1.9 DUF4212 domain-containing protein compare
CSW01_09970 -0.4 -1.8 peptide-methionine (R)-S-oxide reductase compare
CSW01_16205 -0.4 -1.0 DUF3465 domain-containing protein compare
CSW01_17295 -0.4 -2.2 molybdopterin molybdotransferase compare
CSW01_15145 -0.4 -2.0 acetate kinase compare
CSW01_17385 -0.4 -0.8 antibiotic biosynthesis monooxygenase compare
CSW01_07200 -0.4 -0.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
CSW01_06565 -0.4 -2.6 L-serine ammonia-lyase compare
CSW01_07920 -0.4 -1.3 lipid A modification system glycine carrier protein AlmF compare
CSW01_01845 -0.4 -2.5 protease modulator HflK compare
CSW01_12005 -0.4 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_05800 -0.4 -1.2 ATP-dependent Clp protease adaptor ClpS compare
CSW01_16630 -0.4 -0.8 DUF645 domain-containing protein compare
CSW01_08625 -0.4 -1.4 chromosome partition protein MukE compare
CSW01_01920 -0.4 -0.5 bacterioferritin compare
CSW01_16570 -0.4 -1.8 N-acetyltransferase compare
CSW01_11105 -0.4 -1.4 hypothetical protein compare
CSW01_05985 -0.4 -1.5 thioredoxin-disulfide reductase compare
CSW01_05990 -0.4 -1.5 agglutination protein compare
CSW01_18140 -0.4 -2.1 hypothetical protein compare
CSW01_14045 -0.4 -1.4 ParA family protein compare
CSW01_14315 -0.4 -1.9 helix-turn-helix-type transcriptional regulator compare
CSW01_18730 -0.4 -0.8 DUF406 domain-containing protein compare
CSW01_15310 -0.4 -1.2 exoribonuclease R compare
CSW01_06320 -0.4 -1.8 competence/damage-inducible protein A compare
CSW01_17530 -0.3 -1.7 anaerobic C4-dicarboxylate transporter DcuC compare
CSW01_13445 -0.3 -0.5 elongation factor P compare
CSW01_04465 -0.3 -0.9 hypothetical protein compare
CSW01_01330 -0.3 -1.3 oxidoreductase compare
CSW01_10130 -0.3 -1.8 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
CSW01_16800 -0.3 -2.0 anaerobic ribonucleoside-triphosphate reductase compare
CSW01_04570 -0.3 -1.0 exodeoxyribonuclease 7 small subunit compare
CSW01_09250 -0.3 -0.5 crossover junction endodeoxyribonuclease RuvC compare
CSW01_00085 -0.3 -0.9 heat-shock protein Hsp20 compare
CSW01_09900 -0.3 -1.3 ribonuclease D compare
CSW01_04355 -0.3 -1.7 preprotein translocase compare
CSW01_05340 -0.3 -2.2 LysR family transcriptional regulator compare
CSW01_07535 -0.3 -1.8 paraquat-inducible protein A compare
CSW01_02880 -0.3 -1.9 regulatory protein RecX compare
CSW01_18460 -0.3 -0.8 hypothetical protein compare
CSW01_15180 -0.3 -0.7 3-keto-L-gulonate-6-phosphate decarboxylase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in lb_0.5%bileacids_anaerobic experiments

For lb_0.5%bileacids_anaerobic LB_0.5%bileacids across organisms